a b/archives/RadETL/Examples/DBMSio_Ex.R
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############################# Example Code: Data frame transfer RDBMS.. #############################
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# First, connect RDBMS
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# I'm not recommend to input server information in programming code (Security issues)
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# So, I recommend to use environment variables in operating system
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dbms <- "sql server"
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user <- Sys.getenv("user")
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pw <- Sys.getenv("pw")
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server <- Sys.getenv("dbServer")
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# Choose Database name
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databaseSchema <- 'Radiology_CDM.dbo'
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# Using DatabaseConnector package
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io <- DBMSIO$new(server = server, user = user, pw = pw, dbms = dbms)
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# df is radiology Data frame,,
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# The insertDB method checks the row in the data frame and automatically inserts the table name.
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# If the data frame does not fit the R-CDM, an error occurs.
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# You can also inherit the insertTable from the DatabaseConnector package to accept the options for that function.
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# e.q dropTableIfExists etc.
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io$insertDB(dbS = databaseSchema, df = df)
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################################## Example Code: Get data for RDBMS.... #############################
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# Using DBMSIO class in RadETL package
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# table schema names are Radiology_Image and Radiology_Occurrence
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tbSchema <- "Radiology_Occurrence"
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df <- io$dbGetdtS(dbS = databaseSchema, tbS = tbSchema)
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# include conditions....
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df <- io$dbGetdtS(dbS = databaseSchema, tbS = tbSchema, condition = "Image_total_count < 20")
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df$RADIOLOGY_OCCURRENCE_ID
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# if want disconnect (required)
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io$finalize()
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######################################## Example Code: END ##########################################