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OrganSegC2F_v1.0
- Original release.
OrganSegC2F_v1.1
- OrganSegC2F/DataF.py:
. Added the 3-slice-predict-3-slice strategy, which improves the performance.
. Changed the distribution of the random margins added to four sides.
- OrganSegC2F/coarse_fusion.py:
. Changed the definition of thresholds (this does not impact the results).
- OrganSegC2F/oracle_fusion.py:
. Added codes for 3-slice-predict-3-slice.
. Changed the definition of thresholds (this does not impact the results).
- OrganSegC2F/coarse2fine_testing.py:
. Added codes for 3-slice-predict-3-slice.
. Changed the definition of thresholds (this slightly improves the results).
- OrganSegC2F/prototxts/
. Added the prototxt and deploy files for 3-slice-predict-3-slice.
. Renamed the files (the corresponding changes were also made in other codes).
OrganSegC2F_v1.2
- OrganSegC2F/DataC.py:
. Added the 3-slice-predict-3-slice strategy, which improves the performance.
- OrganSegC2F/run.sh:
. Changed the parameter list for some modules.
. Slightly changed the naming method for snapshots and testing results.
- OrganSegC2F/coarse_training.py
. Allowed 3-slice-predict-3-slice coarse-scaled training.
- OrganSegC2F/coarse_testing.py
. Allowed 3-slice-predict-3-slice coarse-scaled testing.
- OrganSegC2F/prototxts/
. Added prototxt and deploy files for 3-slice-predict-3-slice training and testing.
OrganSegC2F_v1.3
- OrganSegC2F/run.sh:
. Changed the default TRAINING_MARGIN to 20 for better results.
- OrganSegC2F/coarse2fine_testing.py
. Fixed a small bug involving the path definition (no impacts on the results).
. Fixed a small bug which will exit the program when all tasks are finished beforehand.
OrganSegC2F_v1.4
- OrganSegC2F/utils.py
. Fixed a bug in data split (fortunately, the split on the NIH dataset is correct).
. Allowed a flexible definition of between organ_ID and label.
OrganSegC2F_v1.5
- OrganSegC2F/utils.py
. Fixed a bug in data split (the split on the NIH dataset is correct).
OrganSegC2F_v1.6
- OrganSegC2F/utils.py
. Fixed a bug in finding most recent snapshots and results.
- OrganSegC2F/oracle_testing.py
. Fixed a bug in the logical order of codes (no impacts on the current results).
OrganSegC2F_v1.7
- OrganSegC2F/run.sh
. "Lazy Mode" added, which allows to run everything within 1 click (see README for details).
. "PLANE" variables can be set as "A": training/testing all three planes orderly.
- OrganSegC2F/init.py
. Sliced image data are not truncated any more (no impacts on the current results).
OrganSegC2F_v1.8
- OrganSegC2F/run.sh
. Fixed a small bug in "Lazy Mode" (log files not automatically moved to snapshot folders).
- OrganSegC2F/prototxts/
. Slightly modified network structures:
* Average accuracy on the NIH dataset improved by 0.3% - 0.5%;
* Computational overhead (time and memory) increased by less than 2%.
. Original prototxts files provided in OrganSegC2F/prototxts_original/ .
OrganSegC2F_v1.9
- OrganSegC2F/coarse2fine_testing.py
. Slightly changed the way of taking slices according to the previous round.
* To be consistent to the oracle_testing.py;
* Little impact on the overall average accuracy (difference < 0.01%).
OrganSegC2F_v1.10
- OrganSegC2F/coarse2fine_testing.py
. Fixed a small bug, which may appear when the output volume is empty.
* No impact on the overall average accuracy on NIH.
OrganSegC2F_v1.11
- OrganSegC2F/run.sh
. Added an export to $LD_LIBRARY_PATH, decreasing the probability of import errors.
- OrganSegC2F/coarse_training.py
- OrganSegC2F/fine_training.py
. Fixed a hidden trouble which may cause file writing problems by accident.
- OrganSegC2F/prototxts/
. Undid the modifications in v1.8, as we observed unstable performance in other organs.