--- a +++ b/docs/PNL_TRAIN.md @@ -0,0 +1,29 @@ + + +[](https://doi.org/10.5281/zenodo.3665739) []() []() + +*CNN-Diffusion-MRIBrain-Segmentation* repository is developed by Senthil Palanivelu, Suheyla Cetin Karayumak, Tashrif Billah, Sylvain Bouix, and Yogesh Rathi, +Brigham and Women's Hospital (Harvard Medical School). + +# Training CNN at PNL + +Training the CNN on new data requires a reasonably powerful GPU machine. Two such +machines are available at PNL: `pnl-oracle` and `pnl-maxwell`. You can ssh into them +as follows: + + + ssh pnl-oracle + ssh pnl-maxwell + + +You may need to append `.bwh.harvard.edu` suffix at the end of the above hostnames. + +Then, source the following environment that makes use of `tensorflow-gpu`: + + + source /rfanfs/pnl-zorro/software/pnlpipe3/CNN-Diffusion-MRIBrain-Segmentation/train_env.sh + + +Finally, follow the instruction from [README.md#training](https://github.com/pnlbwh/CNN-Diffusion-MRIBrain-Segmentation#training) to perform training. + +