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b/pyproject.toml |
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[build-system] |
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requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"] |
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build-backend = "poetry_dynamic_versioning.backend" |
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[tool.poetry-dynamic-versioning] |
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enable = true |
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[tool.poetry] |
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name = "BraTS-Toolkit" |
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version = "0.0.0" # will be overwritten by poetry-dynamic-versioning but needs to be set |
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description = "BraTS Toolkit is a holistic approach to brain tumor segmentation allowing to build modular pipeliens for preprocessing, segmentation and fusion of segmentations." |
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license = "AGPL-3.0" |
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authors = [ |
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"Florian Kofler <florian.kofler@tum.de>", |
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"Christoph Berger <c.berger@tum.de>", |
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"Isra Mekki <isra.mekki@helmholtz-muenchen.de>", |
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"Mahyar Valizadeh <mahyar.valizadeh@helmholtz-muenchen.de>", |
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"Marcel Rosier <marcel.rosier@tum.de>", |
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] |
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maintainers = [ |
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"Florian Kofler <florian.kofler@tum.de>", |
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"Isra Mekki <isra.mekki@helmholtz-muenchen.de>", |
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"Mahyar Valizadeh <mahyar.valizadeh@helmholtz-muenchen.de>", |
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"Marcel Rosier <marcel.rosier@tum.de>", |
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] |
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readme = "README.md" |
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repository = "https://github.com/neuronflow/BraTS-Toolkit" |
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documentation = "https://brats-toolkit.readthedocs.io/en/latest/" |
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keywords = [ |
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"brain tumor", |
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"glioma", |
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"BraTS", |
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"segmentation", |
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"fusion", |
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"skullstripping", |
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"brain extraction", |
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] |
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classifiers = [ |
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"Programming Language :: Python :: 3", |
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"License :: OSI Approved :: GNU Affero General Public License v3", |
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"Operating System :: OS Independent", |
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] |
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[tool.poetry.dependencies] |
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python = "^3.10" |
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# core |
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SimpleITK = "^2.3.1" |
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numpy = "^1.23.0" |
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python-engineio = "^3.14.2" |
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python-socketio = "^4.6.1" |
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requests = "^2.24.0" |
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# pretty citation reminder |
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rich = "^13.6.0" |
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[tool.poetry.dev-dependencies] |
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pytest = "^6.2" |
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[tool.poetry.scripts] |
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brats-segment = 'brats_toolkit.cli:segmentation' |
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brats-fuse = 'brats_toolkit.cli:fusion' |
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brats-batch-preprocess = 'brats_toolkit.cli:batchpreprocess' |
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brats-preprocess = 'brats_toolkit.cli:singlepreprocess' |
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[tool.poetry.group.docs] |
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optional = true |
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[tool.poetry.group.docs.dependencies] |
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Sphinx = ">=7.0.0" |
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sphinx-copybutton = ">=0.5.2" |
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sphinx-rtd-theme = ">=1.3.0" |
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myst-parser = ">=2.0.0" |