--- a +++ b/brats_toolkit/config/dockers.json @@ -0,0 +1,167 @@ +{ + "econib":{ + "name":"econib", + "author":"Michal Marcinkiewicz", + "fileformat":"gz-b17", + "runtime":"runc", + "id":"econib/brats-2018", + "command":" ", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-11726-9_2" + }, + "mic-dkfz":{ + "name":"mic-dkfz", + "author":"Fabian Isensee", + "fileformat":"gz-b17-f", + "runtime":"nvidia", + "id":"fabianisensee/isen2018", + "command":"python3.6 predict_patient.py", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-11726-9_21" + }, + "scan":{ + "name":"scan", + "author":"Richard McKinley", + "fileformat":"b17-t1", + "runtime":"nvidia", + "id":"mckinleyscan/brats:v1", + "command":"python DeepSCAN_BRATS.py", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-11726-9_40" + }, + "xfeng":{ + "name":"xfeng", + "author":"Xue Feng", + "fileformat":"gz-b17-f", + "runtime":"nvidia", + "id":"xf4j/brats18", + "command":"python /brats18/docker_run_survival.py", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-11726-9_25" + }, + "lfb_rwth":{ + "name":"lfb_rwth", + "author":"Leon Weninger", + "fileformat":"gz-b17-t1", + "runtime":"runc", + "id":"leonweninger/brats18_segmentation", + "command":" ", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-11726-9_1" + }, + "gbmnet":{ + "name":"gbmnet", + "author":"Nicholas Nuechterlein", + "fileformat":"gz-b17-t1", + "runtime":"runc", + "id":"nknuecht/gbmnet18", + "command":"python evaluate.py", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-11726-9_22" + }, + "zyx_2019":{ + "name":"zyx_2019", + "author":"yuanxing.zhao@nlpr.ia.ac.cn", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"jiaocha/zyxbrats", + "command":" ", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-32248-9_29" + }, + "scan_2019":{ + "name":"scan_2019", + "author":"Richard McKinley - richard.mckinley@gmail.com", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"scan/brats2019", + "command":"python DeepSCAN_BRATS_2019.py", + "mountpoint":"/data", + "citation": "https://link.springer.com/chapter/10.1007/978-3-030-46640-4_36" + }, + "isen-20":{ + "name":"iisen-20", + "author":"Fabian Isensee", + "email": "f.isensee@dkfz-heidelberg.de", + "citation": "TODO", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"brats/isen-20", + "command":"python runner.py", + "mountpoint":"/app/data/", + "user_mode": true, + "root_issue": false, + "flags": "" + }, + "hnfnetv1-20":{ + "name":"hnfnetv1-20", + "author":"Jia Haozhe", + "email": "HAJ39@pitt.edu", + "citation": "TODO", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"brats/hnfnetv1-20", + "command":"", + "mountpoint":"/app/data/", + "user_mode": true, + "root_issue": false, + "flags": "" + }, + "yixinmpl-20":{ + "name":"yixinmpl-20", + "author":"Yixin Wang", + "email": "wangyixin19@mails.ucas.ac.scan2020cn", + "citation": "TODO", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"brats/yixinmpl-20", + "command":"python run.py", + "mountpoint":"/workspace/data/", + "user_mode": false, + "root_issue": true, + "result_creation": false, + "flags": "" + }, + "sanet0-20":{ + "name":"sanet0-20", + "author":"Yading Yuan", + "email": "yading.yuan@mountsinai.org", + "citation": "TODO", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"brats/sanet0-20", + "command":"", + "mountpoint":"/app/data/", + "user_mode": true, + "root_issue": false, + "flags": "--shm-size=\"128G\"" + }, + "scan_lite-20":{ + "name":"scan_lite-20", + "author":"Richard McKinley", + "email": "richard.mckinley@gmail.com", + "citation": "TODO", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"brats/scan-20", + "command":"python3 DeepSCAN_BRATS_2020.py -l", + "mountpoint":"/app/data/", + "user_mode": true, + "root_issue": false, + "flags": "" + }, + "scan-20":{ + "name":"scan2020", + "author":"Richard McKinley", + "email": "richard.mckinley@gmail.com", + "citation": "TODO", + "fileformat":"gz-b18", + "runtime":"nvidia", + "id":"brats/scan-20", + "command":"python3 DeepSCAN_BRATS_2020.py", + "mountpoint":"/app/data/", + "user_mode": true, + "root_issue": false, + "flags": "" + } +}