/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkPyVnl_hxx
#define itkPyVnl_hxx
#include "itkPyVnl.h"
#include <stdexcept>
namespace itk
{
template<class TElement>
PyObject *
PyVnl<TElement>
::_GetArrayViewFromVnlVector( VectorType * vector)
{
PyObject * memoryView = NULL;
Py_buffer pyBuffer;
memset(&pyBuffer, 0, sizeof(Py_buffer));
size_t elementSize = sizeof(DataType);
int res = 0;
if( !vector )
{
throw std::runtime_error("Input vector is null");
}
DataType *buffer = vector->data_block();
void * vectorBuffer = (void *)( buffer );
// Computing the length of data
Py_ssize_t len = vector->size();
len *= elementSize;
res = PyBuffer_FillInfo(&pyBuffer, NULL, (void*)vectorBuffer, len, 0, PyBUF_CONTIG);
memoryView = PyMemoryView_FromBuffer(&pyBuffer);
PyBuffer_Release(&pyBuffer);
return memoryView;
}
template<class TElement>
const typename PyVnl<TElement>::VectorType
PyVnl<TElement>
::_GetVnlVectorViewFromArray( PyObject *arr, PyObject *shape)
{
PyObject * obj = NULL;
PyObject * shapeseq = NULL;
PyObject * item = NULL;
Py_ssize_t bufferLength;
Py_buffer pyBuffer;
memset(&pyBuffer, 0, sizeof(Py_buffer));
size_t numberOfElements = 1;
const void * buffer;
unsigned int dimension = 0;
size_t elementSize = sizeof(DataType);
size_t len = 1;
if(PyObject_GetBuffer(arr, &pyBuffer, PyBUF_CONTIG) == -1)
{
PyErr_SetString( PyExc_RuntimeError, "Cannot get an instance of NumPy array." );
PyBuffer_Release(&pyBuffer);
return VectorType();
}
else
{
bufferLength = pyBuffer.len;
buffer = pyBuffer.buf;
}
obj = shape;
shapeseq = PySequence_Fast(obj, "expected sequence");
dimension = PySequence_Size(obj);
item = PySequence_Fast_GET_ITEM(shapeseq,0);// Only one dimension
numberOfElements = (size_t)PyLong_AsLong(item);
len = numberOfElements*elementSize;
if ( bufferLength != len )
{
PyErr_SetString( PyExc_RuntimeError, "Size mismatch of vector and Buffer." );
PyBuffer_Release(&pyBuffer);
return VectorType();
}
DataType * data = (DataType *)buffer;
VectorType output(data, numberOfElements);
PyBuffer_Release(&pyBuffer);
return output;
}
template<class TElement>
PyObject *
PyVnl<TElement>
::_GetArrayViewFromVnlMatrix( MatrixType * matrix)
{
PyObject * memoryView = NULL;
Py_buffer pyBuffer;
memset(&pyBuffer, 0, sizeof(Py_buffer));
size_t elementSize = sizeof(DataType);
int res = 0;
if( !matrix )
{
throw std::runtime_error("Input matrix is null");
}
DataType *buffer = matrix->data_block();
//ComponentType *buffer = const_cast < ComponentType *> (reinterpret_cast< const ComponentType* > ( image->GetBufferPointer() ) );
void * matrixBuffer = (void *)( buffer );
// Computing the length of data
Py_ssize_t len = matrix->size();
len *= elementSize;
res = PyBuffer_FillInfo(&pyBuffer, NULL, (void*)matrixBuffer, len, 0, PyBUF_CONTIG);
memoryView = PyMemoryView_FromBuffer(&pyBuffer);
PyBuffer_Release(&pyBuffer);
return memoryView;
}
template<class TElement>
const typename PyVnl<TElement>::MatrixType
PyVnl<TElement>
::_GetVnlMatrixViewFromArray( PyObject *arr, PyObject *shape)
{
PyObject * obj = NULL;
PyObject * shapeseq = NULL;
PyObject * item = NULL;
Py_ssize_t bufferLength;
Py_buffer pyBuffer;
memset(&pyBuffer, 0, sizeof(Py_buffer));
size_t numberOfElements = 1;
const void * buffer;
unsigned int dimension = 0;
size_t elementSize = sizeof(DataType);
size_t len = 1;
unsigned int size[2];
if(PyObject_GetBuffer(arr, &pyBuffer, PyBUF_CONTIG) == -1)
{
PyErr_SetString( PyExc_RuntimeError, "Cannot get an instance of NumPy array." );
PyBuffer_Release(&pyBuffer);
return MatrixType();
}
else
{
bufferLength = pyBuffer.len;
buffer = pyBuffer.buf;
}
obj = shape;
shapeseq = PySequence_Fast(obj, "expected sequence");
dimension = PySequence_Size(obj);
for( unsigned int i = 0; i < 2; ++i )
{
item = PySequence_Fast_GET_ITEM(shapeseq,i);
size[i] = (unsigned int)PyLong_AsLong(item);
numberOfElements *= size[i];
}
len = numberOfElements*elementSize;
if ( bufferLength != len )
{
PyErr_SetString( PyExc_RuntimeError, "Size mismatch of matrix and Buffer." );
PyBuffer_Release(&pyBuffer);
return MatrixType();
}
DataType * data = (DataType *)buffer;
MatrixType output(data, size[0], size[1]);
PyBuffer_Release(&pyBuffer);
return output;
}
} // namespace itk
#endif