__all__ = ['pad_image']
import math
import ants
from ants.decorators import image_method
from ants.internal import get_lib_fn
@image_method
def pad_image(image, shape=None, pad_width=None, value=0.0, return_padvals=False):
"""
Pad an image to have the given shape or to be isotropic.
Arguments
---------
image : ANTsImage
image to pad
shape : tuple
- if shape is given, the image will be padded in each dimension
until it has this shape
- if shape and pad_width are both None, the image will be padded along
each dimension to match the largest existing dimension so that it has
isotropic dimensions.
pad_width : list of integers or list-of-list of integers
How much to pad in each direction. If a single list is
supplied (e.g., [4,4,4]), then the image will be padded by half
that amount on both sides. If a list-of-list is supplied
(e.g., [(0,4),(0,4),(0,4)]), then the image will be
padded unevenly on the different sides
pad_value : scalar
value with which image will be padded
Example
-------
>>> import ants
>>> img = ants.image_read(ants.get_data('r16'))
>>> img2 = ants.pad_image(img, shape=(300,300))
>>> mni = ants.image_read(ants.get_data('mni'))
>>> mni2 = ants.pad_image(mni)
>>> mni3 = ants.pad_image(mni, pad_width=[(0,4),(0,4),(0,4)])
>>> mni4 = ants.pad_image(mni, pad_width=(4,4,4))
"""
inpixeltype = image.pixeltype
ndim = image.dimension
if image.pixeltype != 'float':
image = image.clone('float')
if pad_width is None:
if shape is None:
shape = [max(image.shape)] * image.dimension
lower_pad_vals = [math.floor(max(ns-os,0)/2) for os,ns in zip(image.shape, shape)]
upper_pad_vals = [math.ceil(max(ns-os,0)/2) for os,ns in zip(image.shape, shape)]
else:
if shape is not None:
raise ValueError('Cannot give both `shape` and `pad_width`. Pick one!')
if len(pad_width) != image.dimension:
raise ValueError('Must give pad width for each image dimension')
lower_pad_vals = []
upper_pad_vals = []
for p in pad_width:
if isinstance(p, (list, tuple)):
lower_pad_vals.append(p[0])
upper_pad_vals.append(p[1])
else:
lower_pad_vals.append(math.floor(p/2))
upper_pad_vals.append(math.ceil(p/2))
libfn = get_lib_fn('padImage')
itkimage = libfn(image.pointer, lower_pad_vals, upper_pad_vals, value)
new_image = ants.from_pointer(itkimage).clone(inpixeltype)
if return_padvals:
return new_image, lower_pad_vals, upper_pad_vals
else:
return new_image