#!/bin/bash

# ---------------------------------------------

# create local ~/.antspy dir and move package data to it

if [[ ! -d ~/.antspy ]]; then

    mkdir ~/.antspy

fi

cp data/* ~/.antspy/

# ---------------------------------------------

# clone ANTs and move all files into library directory

antsgit=https://github.com/ANTsX/ANTs.git

antstag=fc0589fd23826e53d51e67eb8a3f9a3d63e63a14 # 02-26-2025 label geometry fix

echo "ANTS;${antstag}" >> ./data/softwareVersions.csv

cd src # go to lib dir

# if antscore doesnt exist, create it

if [[ ! -d antscore ]] ; then

    git clone $antsbranch $antsgit antsrepo

    if [[ ! -d antscore ]] ; then

        mkdir antscore

    fi

    cd antsrepo # go to antscore

    # check out right branch

    if [[ -d .git ]]; then

        git checkout master

        git pull

        git checkout $antstag

    fi

    cd ..

    # copy antscore files into library

    cp -r antsrepo/Examples/*  antscore/

    cp -r antsrepo/Examples/include/*  antscore

    cp -r antsrepo/ImageRegistration/*  antscore/

    cp -r antsrepo/ImageSegmentation/*  antscore/

    cp -r antsrepo/Tensor/*  antscore/

    cp -r antsrepo/Temporary/*  antscore/

    cp -r antsrepo/Utilities/*  antscore/

    rm -rf antsrepo # remove directory

    # lil hack bc of stupid angled import bug in actual files

    # cp ReadWriteData.h antscore/ReadWriteData.h

    # lil hack bc ANTsVersionConfig.h is only created if you build ANTs...

    cp ANTsVersionConfig.h antscore/ANTsVersionConfig.h

fi

cd  ../../ # go back to main dir