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b/docs/other/All_Functions.md |
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ANTsR_Name ANTsPy_Name Description |
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abpN4 | | |
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affineInitializer | | a multi-start optimizer for affine registration |
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mean | |,antsImage-method arith.antsImage |
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antsImageClone | | |
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antsMotionCalculation | | Correct 4D time-series data for motion. |
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antsRegistration | | |
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antsImagePhysicalSpaceConsistency | | Check for physical space consistency |
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antsImageRead | | |
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antsrimpute | | |
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antsImageHeaderInfo | | Read file info from image header |
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antsMotionCorr | | Motion Correction |
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antsImageGetSet | | antsImageGetSet |
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antsImageMutualInformation | | mutual information between two images |
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antsImageWrite | | |
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antsSetPixels | | Set a pixel value at an index |
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aslDenoiseR | | |
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aslPerfusion | | |
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antsTransformIndexToPhysicalPoint | | Get Spatial Point from Index |
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as.antsImage | | |
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antsTransformPhysicalPointToIndex | | Get Index from Spatial Point |
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antsSpatialICAfMRI | | |
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aslOutlierRejection | | Pair-wise subtraction based outlier rejection. |
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atropos | | FMM Segmentation |
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as.antsMatrix | | as.antsMatrix |
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combineNuisancePredictors | | Combine and reduce dimensionality of nuisance predictors. |
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clusterTimeSeries | | Split time series image into k distinct images |
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bigLMStats | | |
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bayesianlm | | Simple bayesian regression function. |
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computeDVARS | | computeDVARS |
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compcor | | |
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basicInPaint | | Inpaints missing imaging data from boundary data |
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bayesianCBF | | Uses probabilistic segmentation to constrain pcasl-based cbf computation. |
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blockStimulus | | |
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bold_correlation_matrix | | bold_correlation_matrix |
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crossvalidatedR2 | | Cross-Validated R^2 value |
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createJacobianDeterminantImage | | createJacobianDeterminantImage |
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DesikanKillianyTourville | | DesikanKillianyTourville |
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eigSeg | | |
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cropImage | | crop a sub-image via a mask |
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cropIndices | | crop a sub-image by image indices |
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convolveImage | | convolve one image with another |
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corw | | |
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cvEigenanatomy | | |
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decropImage | | decrop a sub-image back into the full image |
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getMask | | |
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getfMRInuisanceVariables | | |
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getNeighborhoodInMask | | Get neighborhoods for voxels within mask |
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getPixels | | Get Pixels |
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icawhiten | | |
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image2ClusterImages | | |
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imageFileNames2ImageList | | |
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imageListToMatrix | | |
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iMath | | iMath |
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iMathOps | | iMathOps |
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maskImage | | |
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matrix2timeseries | | Simple matrix2timeseries function. |
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getAverageOfTimeSeries | | |
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getCentroids | | |
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hemodynamicRF | | Linear Model for FMRI Data |
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iBind | | iBind |
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initializeEigenanatomy | | |
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interleaveMatrixWithItself | | |
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labelStats | | labelStats |
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lappend | | |
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makeGraph | | |
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makeImage | | |
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partialVolumeCorrection | | |
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projectImageAlongAxis | | |
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perfusionregression | | |
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quantifyCBF | | |
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sparseDecom | | |
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sparseDecom2 | | |
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usePkg | | Use any package. If package is not installed, this will install from CRAN. |
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vwnrfs | | voxelwise neighborhood random forest segmentation and prediction |
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antsApplyTransforms | | |
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n4BiasFieldCorrection | | Bias Field Correction |
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reorientImage | | reorient image by its principal axis |
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renderSurfaceFunction | | |
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rfSegmentationPredict | | |
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subjectDataToGroupDataFrame | | |
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timeseries2matrix | | |
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rsfDenoise | | |
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taskFMRI | | |
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timeseriesN3 | | Run N3 on slices of timeseries. |
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filterfMRIforNetworkAnalysis | | |
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getNeighborhoodAtVoxel | | Get a hypercube neighborhood at a voxel |
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imagesToMatrix | | |
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getMultivariateTemplateCoordinates | | |
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lowrankRowMatrix | | Produces a low rank version of the input matrix |
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imageMath | | R access to the ANTs program ImageMath |
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labelGeometryMeasures | | labelGeometryMeasures |
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labelImageCentroids | | labelImageCentroids |
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frequencyFilterfMRI | | |
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antsBOLDNetworkAnalysis | | a basic framework for network analysis that produces graph metrics |
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antsCopyImageInfo | | Copy header info |
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getANTsRData | | getANTsRData |
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plotBasicNetwork | | |
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getASLNoisePredictors | | Get nuisance predictors from ASL images |
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is.antsImage | | is.antsImage |
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joinEigenanatomy | | |
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invariantImageSimilarity | | similarity metrics between two images as a function of geometry |
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jointIntensityFusion | | joint intensity fusion |
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aal | | aal |
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plot.antsImage | | Plotting an image slice or multi-slice with optional color overlay. |
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abpBrainExtraction | | |
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getTemplateCoordinates | | |
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extractSlice | | extract a slice from an image |
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%>% | | Pipe an object forward |
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exemplarInpainting | | Uses example images to inpaint or approximate an existing image. |
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quantifySNPs | | Simple quantifySNPs function. |
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rapidlyInspectImageData | | Simple rapidlyInspectImageData function. |
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whiten | | |
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temporalwhiten | | |
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thresholdImage | | Threshold Image |
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jointIntensityFusion3D | | jointIntensityFusion3D |
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antsAverageImages | | Computes average of image list |
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kellyKapowski | | Compute cortical thickness using the DiReCT algorithm. |
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mrvnrfs | | multi-res voxelwise neighborhood random forest segmentation learning |
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mrvnrfs.predict | | multi-res voxelwise neighborhood random forest segmentation |
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n3BiasFieldCorrection | | Bias Field Correction |
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plotPrettyGraph | | |
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preprocessfMRI | | Preprocess BOLD fMRI image data. |
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reflectImage | | reflectImage |
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sparseDecom2boot | | |
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sparseDecomboot | | |
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regressionNetworkViz | | |
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timeserieswindow2matrix | | |
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tracts | | tracts |
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save.ANTsR | | save.ANTsR |
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segmentShapeFromImage | | convolution-based shape identification |
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kmeansSegmentation | | k means image segmentation. |
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labelClusters | | |
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matrixToImages | | |
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networkEiganat | | |
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mni2tal | | |
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pairwiseImageDistanceMatrix | | |
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regressProjections | | |
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renderImageLabels | | |
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sliceTimingCorrection | | slice timing correction for fMRI. |
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sparseRegression | | |
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smoothImage | | Smooth image |
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spatialbayesianlm | | spatially constrained bayesian regression function. |
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make3ViewPNG | | |
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resampleImage | | resampleImage |
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rfSegmentation | | |
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splitData | | |
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subgradientL1Regression | | |
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antsPreprocessfMRI | | |
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as.matrix | | |
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as.numeric | | |
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perfusion-predictors | | |
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getROIValues | | |
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phantom_population_study | | |
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fastwhiten | | |
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Motion-Correction | | |
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sccan | | |
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as.antsImage | | |
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as.array | | |
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MeasureMinMaxMean | | |
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plotANTsImage | | |
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renderNetwork | | |
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visualizeBlob | | |
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inspectImageData3D | | |
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antsImage-class | | |
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CBF | | |
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simple_roi_analysis | | |
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simple_voxel_based_analysis | | |
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KellyKapowski | | |
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Atropos | | |
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Extract | | |
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SmoothImage | | |
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N3BiasFieldCorrection | | |
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ImageMath | | |
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Comparison | | |
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ThresholdImage | | |
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antsMatrix-class | | An S4 class to hold an antsMatrix imported from ITK types |
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antsRegion-class | | An S4 class to hold a region of an antsImage |
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%>% | | Pipe an object forward |