import json
import utils
import os
import utils_lung
if utils.hostname() == 'user':
with open('SETTINGS_user.json') as data_file:
paths = json.load(data_file)
else:
with open('SETTINGS.json') as data_file:
paths = json.load(data_file)
# kaggle data
STAGE = int(paths["STAGE"])
if STAGE == 1:
METADATA_PATH = paths["METADATA_PATH_1"]
DATA_PATH = paths["DATA_PATH_1"]
utils.check_data_paths(DATA_PATH)
SAMPLE_SUBMISSION_PATH = paths["SAMPLE_SUBMISSION_PATH_1"]
if not os.path.isfile(SAMPLE_SUBMISSION_PATH):
raise ValueError('no stage 1 sample submission file')
elif STAGE == 2:
METADATA_PATH = paths["METADATA_PATH_2"]
DATA_PATH = paths["DATA_PATH_2"]
utils.check_data_paths(DATA_PATH)
SAMPLE_SUBMISSION_PATH = paths["SAMPLE_SUBMISSION_PATH_2"]
if not os.path.isfile(SAMPLE_SUBMISSION_PATH):
raise ValueError('no stage 2 sample submission file')
LABELS_PATH = paths["LABELS_PATH"]
if not os.path.isfile(LABELS_PATH):
raise ValueError('no file with train labels')
TEST_LABELS_PATH = paths["TEST_LABELS_PATH"]
if not os.path.isfile(TEST_LABELS_PATH):
raise ValueError('no file with test labels')
VALIDATION_SPLIT_PATH = paths["VALIDATION_SPLIT_PATH"]
if not os.path.isfile(VALIDATION_SPLIT_PATH):
raise ValueError('no VALIDATION_SPLIT_PATH file')
FINAL_SPLIT_PATH = paths["FINAL_SPLIT_PATH"]
if not os.path.isfile(FINAL_SPLIT_PATH):
raise ValueError('no FINAL_SPLIT_PATH file')
# luna data
LUNA_DATA_PATH = paths["LUNA_DATA_PATH"]
utils.check_data_paths(LUNA_DATA_PATH)
LUNA_SEG_DATA_PATH = paths["LUNA_SEG_DATA_PATH"]
utils.check_data_paths(LUNA_SEG_DATA_PATH)
LUNA_LABELS_PATH = paths["LUNA_LABELS_PATH"]
if not os.path.isfile(LUNA_LABELS_PATH):
raise ValueError('no file with luna annotations')
LUNA_CANDIDATES_PATH = paths["LUNA_CANDIDATES_PATH"]
if not os.path.isfile(LUNA_CANDIDATES_PATH):
raise ValueError('no LUNA file candidates_V2.csv')
LUNA_VALIDATION_SPLIT_PATH = paths["LUNA_VALIDATION_SPLIT_PATH"]
if not os.path.isfile(LUNA_VALIDATION_SPLIT_PATH):
raise ValueError('no LUNA validation split file')
LUNA_NODULE_ANNOTATIONS_PATH = paths["LUNA_NODULE_ANNOTATIONS"]
utils.check_data_paths(LUNA_NODULE_ANNOTATIONS_PATH)
LUNA_PROPERTIES_PATH = paths['LUNA_PROPERTIES_PATH']
if not os.path.isfile(LUNA_PROPERTIES_PATH):
raise ValueError('no LUNA properties file')
VALIDATION_LB_MIXED_SPLIT_PATH = paths['VALIDATION_LB_MIXED_SPLIT_PATH']
if not os.path.isfile(VALIDATION_LB_MIXED_SPLIT_PATH):
raise ValueError('no mixed validation and LB file')