#!/usr/bin/env python
__doc__ = """
Simple example script showing how to use the Sybil library locally to predict risk scores for a set of DICOM files.
"""
import sybil
from sybil import visualize_attentions
from utils import get_demo_data
def main():
# Load a trained model
model = sybil.Sybil("sybil_ensemble")
dicom_files = get_demo_data()
# Get risk scores
serie = sybil.Serie(dicom_files)
print(f"Processing {len(dicom_files)} DICOM files")
prediction = model.predict([serie], return_attentions=True)
scores = prediction.scores
print(f"Risk scores: {scores}")
# Visualize attention maps
output_dir = "sybil_attention_output"
print(f"Writing attention images to {output_dir}")
series_with_attention = visualize_attentions(
serie,
attentions=prediction.attentions,
save_directory=output_dir,
gain=3,
)
print(f"Finished writing attention images to {output_dir}")
if __name__ == "__main__":
main()