# http://setuptools.readthedocs.io/en/latest/setuptools.html#configuring-setup-using-setup-cfg-files

[metadata]

name = sybil

description = Sybil

author = Peter G. Mikhael

author_email = 

license_file = LICENSE.txt

long_description = file: README.md

long_description_content_type = text/markdown; charset=UTF-8; variant=GFM

version = 1.4.0

# url = 

project_urls =

    Documentation = https://github.com/reginabarzilaygroup/sybil/wiki

    Source = https://github.com/reginabarzilaygroup/sybil

    Tracker = https://github.com/reginabarzilaygroup/sybil/issues

# Change if running only on Windows, Mac or Linux (comma-separated)

platforms = any

# Add here all kinds of additional classifiers as defined under

# https://pypi.python.org/pypi?%3Aaction=list_classifiers

classifiers =

    Programming Language :: Python

[easy_install]

find_links =

    https://download.pytorch.org/whl/cu117/torch_stable.html

[options]

zip_safe = False

packages = find:

include_package_data = True

python_requires = >=3.8,<3.11

# Add here dependencies of your project (line-separated), e.g. requests>=2.2,<3.0.

# Version specifiers like >=2.2,<3.0 avoid problems due to API changes in

# new major versions. This works if the required packages follow Semantic Versioning.

# For more information, check out https://semver.org/.

install_requires =

    importlib-metadata; python_version>="3.8"

    imageio==2.34.1

    numpy==1.24.1

    opencv-python==4.5.4.60

    opencv-python-headless==4.5.4.60

    pillow>=10.2.0

    pydicom==2.3.0

    pylibjpeg[all]==2.0.0

    torch==1.13.1+cu117; platform_machine == "x86_64"

    torch==1.13.1; platform_machine != "x86_64"

    torchio==0.18.74

    torchvision==0.14.1+cu117; platform_machine == "x86_64"

    torchvision==0.14.1; platform_machine != "x86_64"

    tqdm==4.62.3

[options.packages.find]

exclude =

    tests

[options.extras_require]

# Add here test requirements (semicolon/line-separated)

testing =

    setuptools

    pytest

    pytest-cov

    flake8

    mypy

    black

train =

    albumentations==1.1.0

    lifelines==0.26.4

    pytorch_lightning==1.6.0

    scikit-learn==1.0.2

[options.entry_points]

console_scripts =

    sybil-predict = sybil.predict:main

[bdist_wheel]

# Use this option if your package is pure-python

universal = 1

[devpi:upload]

# Options for the devpi: PyPI server and packaging tool

# VCS export must be deactivated since we are using setuptools-scm

no_vcs = 1

formats = bdist_wheel

[tool:pytest]

norecursedirs =

    .git

    dist

    build

    .tox

addopts =

    --verbose

testpaths = tests

# Use pytest markers to select/deselect specific tests

# markers =

#     slow: mark tests as slow (deselect with '-m "not slow"')

#     system: mark end-to-end system tests

[flake8]

max-line-length = 88

extend_ignore = E203, W503

# ^  Black-compatible

#    E203 and W503 have edge cases handled by black

exclude = 

    .tox

    *.egg

    build

    temp

    docs/*

    tests/*

    dist

[mypy]

ignore_missing_imports = True

allow_redefinition = True

; follow_imports = skip

; warn_unused_configs = True