--- a
+++ b/docs/conf.py
@@ -0,0 +1,299 @@
+# type: ignore
+# This file is execfile()d with the current directory set to its containing dir.
+#
+# This file only contains a selection of the most common options. For a full
+# list see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+import os
+import sys
+import inspect
+import shutil
+
+# -- Path setup --------------------------------------------------------------
+
+__location__ = os.path.join(
+    os.getcwd(), os.path.dirname(inspect.getfile(inspect.currentframe()))
+)
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+sys.path.insert(0, os.path.join(__location__, "../sybil"))
+
+# -- Run sphinx-apidoc -------------------------------------------------------
+# This hack is necessary since RTD does not issue `sphinx-apidoc` before running
+# `sphinx-build -b html . _build/html`. See Issue:
+# https://github.com/rtfd/readthedocs.org/issues/1139
+# DON'T FORGET: Check the box "Install your project inside a virtualenv using
+# setup.py install" in the RTD Advanced Settings.
+# Additionally it helps us to avoid running apidoc manually
+
+try:  # for Sphinx >= 1.7
+    from sphinx.ext import apidoc
+except ImportError:
+    from sphinx import apidoc
+
+output_dir = os.path.join(__location__, "api")
+module_dir = os.path.join(__location__, "../sybil")
+try:
+    shutil.rmtree(output_dir)
+except FileNotFoundError:
+    pass
+
+try:
+    import sphinx
+
+    cmd_line_template = (
+        "sphinx-apidoc --implicit-namespaces -f -o {outputdir} {moduledir}"
+    )
+    cmd_line = cmd_line_template.format(outputdir=output_dir, moduledir=module_dir)
+
+    args = cmd_line.split(" ")
+    if tuple(sphinx.__version__.split(".")) >= ("1", "7"):
+        # This is a rudimentary parse_version to avoid external dependencies
+        args = args[1:]
+
+    apidoc.main(args)
+except Exception as e:
+    print("Running `sphinx-apidoc` failed!\n{}".format(e))
+
+# -- General configuration ---------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = [
+    "sphinx.ext.autodoc",
+    "sphinx.ext.intersphinx",
+    "sphinx.ext.todo",
+    "sphinx.ext.autosummary",
+    "sphinx.ext.viewcode",
+    "sphinx.ext.coverage",
+    "sphinx.ext.doctest",
+    "sphinx.ext.ifconfig",
+    "sphinx.ext.mathjax",
+    "sphinx.ext.napoleon",
+]
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ["_templates"]
+
+
+# Configure AutoStructify
+# https://recommonmark.readthedocs.io/en/latest/auto_structify.html
+def setup(app):
+    from recommonmark.transform import AutoStructify
+
+    params = {
+        "enable_auto_toc_tree": True,
+        "auto_toc_tree_section": "Contents",
+        "auto_toc_maxdepth": 2,
+        "enable_eval_rst": True,
+        "enable_math": True,
+        "enable_inline_math": True,
+    }
+    app.add_config_value("recommonmark_config", params, True)
+    app.add_transform(AutoStructify)
+
+
+# Enable markdown
+extensions.append("recommonmark")
+
+# The suffix of source filenames.
+source_suffix = [".rst", ".md"]
+
+# The encoding of source files.
+# source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = "index"
+
+# General information about the project.
+project = "sybil"
+copyright = "2021, Peter Mikhael & Jeremy Wohlwend"
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = ""  # Is set by calling `setup.py docs`
+# The full version, including alpha/beta/rc tags.
+release = ""  # Is set by calling `setup.py docs`
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+# language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+# today = ''
+# Else, today_fmt is used as the format for a strftime call.
+# today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", ".venv"]
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+# default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+# add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+# add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+# show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = "sphinx"
+
+# A list of ignored prefixes for module index sorting.
+# modindex_common_prefix = []
+
+# If true, keep warnings as "system message" paragraphs in the built documents.
+# keep_warnings = False
+
+
+# -- Options for HTML output -------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+html_theme = "alabaster"
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further.  For a list of options available for each theme, see the
+# documentation.
+html_theme_options = {"sidebar_width": "300px", "page_width": "1200px"}
+
+# Add any paths that contain custom themes here, relative to this directory.
+# html_theme_path = []
+
+# The name for this set of Sphinx documents.  If None, it defaults to
+# "<project> v<release> documentation".
+try:
+    from sybil import __version__ as version
+except ImportError:
+    pass
+else:
+    release = version
+
+# A shorter title for the navigation bar.  Default is the same as html_title.
+# html_short_title = None
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+# html_logo = ""
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+# html_favicon = None
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ["_static"]
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+# html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+# html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+# html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+# html_additional_pages = {}
+
+# If false, no module index is generated.
+# html_domain_indices = True
+
+# If false, no index is generated.
+# html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+# html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+# html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+# html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+# html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it.  The value of this option must be the
+# base URL from which the finished HTML is served.
+# html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+# html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = "sybil-doc"
+
+# -- Options for LaTeX output ------------------------------------------------
+
+latex_elements = {
+    # The paper size ("letterpaper" or "a4paper").
+    # "papersize": "letterpaper",
+    # The font size ("10pt", "11pt" or "12pt").
+    # "pointsize": "10pt",
+    # Additional stuff for the LaTeX preamble.
+    # "preamble": "",
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass [howto/manual]).
+latex_documents = [
+    ("index", "user_guide.tex", "sybil Documentation", "Peter Mikhael", "manual")
+]
+
+# The name of an image file (relative to this directory) to place at the top of
+# the title page.
+# latex_logo = ""
+
+# For "manual" documents, if this is true, then toplevel headings are parts,
+# not chapters.
+# latex_use_parts = False
+
+# If true, show page references after internal links.
+# latex_show_pagerefs = False
+
+# If true, show URL addresses after external links.
+# latex_show_urls = False
+
+# Documents to append as an appendix to all manuals.
+# latex_appendices = []
+
+# If false, no module index is generated.
+# latex_domain_indices = True
+
+# -- External mapping --------------------------------------------------------
+python_version = ".".join(map(str, sys.version_info[0:2]))
+intersphinx_mapping = {
+    "sphinx": ("http://www.sphinx-doc.org/en/stable", None),
+    "python": ("https://docs.python.org/" + python_version, None),
+    "matplotlib": ("https://matplotlib.org", None),
+    "numpy": ("https://docs.scipy.org/doc/numpy", None),
+    "sklearn": ("https://scikit-learn.org/stable", None),
+    "pandas": ("https://pandas.pydata.org/pandas-docs/stable", None),
+    "scipy": ("https://docs.scipy.org/doc/scipy/reference", None),
+}