Diff of /code/augmentation.py [000000] .. [ebf7be]

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a b/code/augmentation.py
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"""
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    A utility script for data augmentation 
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    Usage: assign your path string to global variable 'path'
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"""
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import SimpleITK as sitk
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import numpy as np
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import csv
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from glob import glob
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import pandas as pd
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import os
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import matplotlib
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import matplotlib.pyplot as plt
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import traceback
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import random
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from PIL import Image
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path = '/home/ubuntu/data/train-3d/'
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file_list=glob(path+"*true*")
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for file in file_list:
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    e = np.load(file)
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    file_name = file.split('/')[-1]
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    # several flip and rotation cases
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    np.save(path+'1_'+file_name,np.transpose(e,(0,2,1)))
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    np.save(path+'2_'+file_name,np.flipud(e))
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    np.save(path+'3_'+file_name,np.flipud(np.transpose(e,(0,2,1))))
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    np.save(path+'4_'+file_name,np.fliplr(e))
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    np.save(path+'5_'+file_name,np.transpose(np.fliplr(e),(0,2,1)))
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    np.save(path+'6_'+file_name,np.flipud(np.fliplr(e)))
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    np.save(path+'7_'+file_name,np.flipud(np.transpose(np.fliplr(e),(0,2,1))))
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    np.save(path+'8_'+file_name,np.transpose(np.rot90(e,1,(1,2)),(0,2,1)))
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    np.save(path+'9_'+file_name,np.rot90(e,1,(1,2)))
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    np.save(path+'10_'+file_name,np.flipud(np.transpose(np.rot90(e,1,(1,2)),(0,2,1))))
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    np.save(path+'11_'+file_name,np.flipud(np.rot90(e,1,(1,2))))
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