--- a/README.md +++ b/README.md @@ -1,18 +1,17 @@ -# Cox-AMIL - -## Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays - -This repository contains the code that was used for our BVM workshop sumbission *Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays* available on [ArXiv](https://arxiv.org/abs/2212.07724). - -<img src="architecture_bg.png" width="600px" align="center"/> - -The code is based on the [CLAM](https://github.com/mahmoodlab/CLAM) framework for weakly-supervised classification on whole-slide images. The images were preprocessed as described in the original documentation. The model was trained using `main_survival.py`. Some evaluations are availabe in `tma_notebooks\09_evaluation_Ostercappeln.ipynb`. - -## License - -The code is released under the GPLv3 License following the original code base [here](https://github.com/mahmoodlab/CLAM). - - -## Acknowledgements - +# Cox-AMIL + +## Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays + +This repository contains the code that was used for our BVM workshop sumbission *Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays* available on [ArXiv](https://arxiv.org/abs/2212.07724). + + +The code is based on the [CLAM](https://github.com/mahmoodlab/CLAM) framework for weakly-supervised classification on whole-slide images. The images were preprocessed as described in the original documentation. The model was trained using `main_survival.py`. Some evaluations are availabe in `tma_notebooks\09_evaluation_Ostercappeln.ipynb`. + +## License + +The code is released under the GPLv3 License following the original code base [here](https://github.com/mahmoodlab/CLAM). + + +## Acknowledgements + J.A. acknowleges funding by the [Bavarian Institute for Digital Transformation](https://badw.de/bayerisches-forschungsinstitut-fuer-digitale-transformation.html) from the Project [ReGInA](https://en.bidt.digital/regina/). \ No newline at end of file