% Encoding: UTF-8
%
% If available, include a DOI (preferred) *or* a URL for a given reference, but
# not both, as the DOI turns into a link which is redundant with the URL.
% MNE-C reference
@article{GramfortEtAl2014,
title = {{{MNE}} Software for Processing {{MEG}} and {{EEG}} Data},
author = {Gramfort, Alexandre and Luessi, Martin and Larson, Eric and Engemann, Denis A. and Strohmeier, Daniel and Brodbeck, Christian and Parkkonen, Lauri and H{\"a}m{\"a}l{\"a}inen, Matti S.},
year = {2014},
volume = {86},
pages = {446--460},
doi = {10.1016/j.neuroimage.2013.10.027},
journal = {NeuroImage},
}
% MNE-Python reference
@article{GramfortEtAl2013a,
title = {{{MEG}} and {{EEG}} Data Analysis with {{MNE}}-{{Python}}},
author = {Gramfort, Alexandre and Luessi, Martin and Larson, Eric and Engemann, Denis A. and Strohmeier, Daniel and Brodbeck, Christian and Goj, Roman and Jas, Mainak and Brooks, Teon and Parkkonen, Lauri and H{\"a}m{\"a}l{\"a}inen, Matti S.},
year = {2013},
volume = {7},
pages = {1--13},
doi = {10.3389/fnins.2013.00267},
journal = {Frontiers in Neuroscience},
number = {267}
}
% everything else
@article{AblinEtAl2018,
author = {Ablin, Pierre and Cardoso, Jean-Francois and Gramfort, Alexandre},
doi = {10.1109/TSP.2018.2844203},
journal = {IEEE Transactions on Signal Processing},
number = {15},
pages = {4040-4049},
title = {Faster {{Independent Component Analysis}} by Preconditioning with Hessian Approximations},
volume = {66},
year = {2018}
}
@article{AcunzoEtAl2012,
author = {Acunzo, David J. and MacKenzie, Graham and {van Rossum}, Mark C.W.},
doi = {10.1016/j.jneumeth.2012.06.011},
journal = {Journal of Neuroscience Methods},
number = {1},
pages = {212-218},
title = {Systematic Biases in Early {{ERP}} and {{ERF}} Components as a Result of High-Pass Filtering},
volume = {209},
year = {2012}
}
@article{Alday2019,
title = {How much baseline correction do we need in {ERP} research? Extended {GLM} model can replace baseline correction while lifting its limits},
author = {Alday, Phillip M.},
year = {2019},
volume = {56},
doi = {10.1111/psyp.13451},
journal = {Psychophysiology},
number = {12}
}
@article{ArtoniEtAl2018,
author = {Artoni, Fiorenzo and Delorme, Arnaud and Makeig, Scott},
doi = {10.1016/j.neuroimage.2018.03.016},
journal = {NeuroImage},
pages = {176-187},
title = {Applying Dimension Reduction to {{EEG}} Data by {{Principal Component Analysis}} Reduces the Quality of Its Subsequent {{Independent Component}} Decomposition},
volume = {175},
year = {2018}
}
@article{AvantsEtAl2008,
author = {Avants, Brian B. and Epstein, Charles L. and Grossman, Murray C. and Gee, James C.},
doi = {10.1016/j.media.2007.06.004},
journal = {Medical Image Analysis},
number = {1},
pages = {26-41},
shorttitle = {Symmetric Diffeomorphic Image Registration with Cross-Correlation},
title = {Symmetric Diffeomorphic Image Registration with Cross-Correlation: Evaluating Automated Labeling of Elderly and Neurodegenerative Brain},
volume = {12},
year = {2008}
}
@article{BailletEtAl2001,
author = {Baillet, Sylvain and Mosher, John C. and Leahy, Richard M.},
doi = {10.1109/79.962275},
journal = {IEEE Signal Processing Magazine},
number = {6},
pages = {14-30},
title = {Electromagnetic Brain Mapping},
volume = {18},
year = {2001}
}
@inproceedings{BarachantEtAl2010,
author = {Barachant, Alexandre and Bonnet, Stephane and Congedo, Marco and Jutten, Christian},
booktitle = {2010 IEEE International Workshop on Multimedia Signal Processing},
title = {Common Spatial Pattern revisited by {Riemannian} geometry},
year = {2010},
pages={472-476},
doi = {10.1109/MMSP.2010.5662067}
}
@book{Barber2012,
address = {{Cambridge}},
author = {Barber, David},
isbn = {978-0-521-51814-7},
publisher = {{Cambridge University Press}},
title = {Bayesian Reasoning and Machine Learning},
url = {http://www.cs.ucl.ac.uk/staff/d.barber/brml/},
year = {2012}
}
@inproceedings{BekhtiEtAl2016,
address = {{Trento}},
author = {Bekhti, Yousra and Strohmeier, Daniel and Jas, Mainak and Badeau, Roland and Gramfort, Alexandre},
booktitle = {Proceedings of {{PRNI}}-2016},
doi = {10.1109/PRNI.2016.7552337},
isbn = {978-1-4673-6530-7},
pages = {1-4},
publisher = {{IEEE}},
title = {M/{{EEG}} Source Localization with Multi-Scale Time-Frequency Dictionaries},
year = {2016}
}
@article{BellSejnowski1995,
author = {Bell, Anthony J. and Sejnowski, Terrence J.},
doi = {10.1162/neco.1995.7.6.1129},
journal = {Neural Computation},
number = {6},
pages = {1129-1159},
title = {An Information-Maximization Approach to Blind Separation and Blind Deconvolution},
volume = {7},
year = {1995}
}
@article{BentivoglioEtAl1997,
author = {Bentivoglio, Anna Rita and Bressman, Susan B. and Cassetta, Emanuele and Carretta, Donatella and Tonali, Pietro and Albanese, Alberto},
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journal = {Movement Disorders},
number = {6},
pages = {1028-1034},
title = {Analysis of Blink Rate Patterns in Normal Subjects},
volume = {12},
year = {1997}
}
@article{BergScherg1994,
author = {Berg, Patrick and Scherg, Michael},
doi = {10.1016/0013-4694(94)90113-9},
journal = {Electroencephalography and Clinical Neurophysiology},
number = {1},
pages = {58-64},
title = {A Fast Method for Forward Computation of Multiple-Shell Spherical Head Models},
volume = {90},
year = {1994}
}
@inproceedings{BigdelyShamloEtAl2013,
author = {Bigdely-Shamlo, Nima and Kreutz-Delgado, Kenneth and Robbins, Kay and Miyakoshi, Makoto and Westerfield, Marissa and Bel-Bahar, Tarik and Kothe, Christian and Hsi, Jessica and Makeig, Scott},
doi = {10.1109/GlobalSIP.2013.6736796},
booktitle = {2013 IEEE Global Conference on Signal and Information Processing},
pages = {1--4},
title = {Hierarchical event descriptor {(HED)} tags for analysis of event-related {EEG} studies},
organization = {IEEE},
year = {2013},
}
@article{BlankertzEtAl2008,
author = {Blankertz, Benjamin and Tomioka, Ryota and Lemm, Steven and Kawanabe, Motoaki and Müller, Klaus-Robert},
doi = {10.1109/MSP.2008.4408441},
journal = {IEEE Signal Processing Magazine},
number = {1},
pages = {41-56},
title = {Optimizing Spatial Filters for Robust {{EEG}} Single-Trial Analysis},
volume = {25},
year = {2008}
}
@article{Bookstein1989,
author = {Bookstein, Fred L.},
doi = {10.1109/34.24792},
journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
number = {6},
pages = {567-585},
shorttitle = {Principal Warps},
title = {Principal Warps: Thin-Plate Splines and the Decomposition of Deformations},
volume = {11},
year = {1989}
}
@article{BrookesEtAl2008,
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doi = {10.1016/j.neuroimage.2007.09.050},
journal = {NeuroImage},
number = {4},
pages = {1788-1802},
title = {Optimising Experimental Design for {{MEG}} Beamformer Imaging},
volume = {39},
year = {2008}
}
@article{BrunaEtAl2018,
doi = {10.1088/1741-2552/aacfe4},
year = {2018},
publisher = {{IOP} Publishing},
volume = {15},
number = {5},
pages = {056011},
author = {Ricardo Bru{\~{n}}a, Fernando Maest{\'{u}}, Ernesto Pereda},
title = {Phase locking value revisited: teaching new tricks to an old dog},
journal = {Journal of Neural Engineering},
}
@techreport{BurdakovMerkulov2001,
title={On a new norm for data fitting and optimization problems},
author={Burdakov, Oleg and Merkulov, Boris},
number={LiTH-MAT-R-2001-29},
address={Link{\"o}ping},
institution={Link{\"o}ping University},
type = {Technical {{Report}}},
year={2001}
}
@article{CamposViolaEtAl2009,
author = {Campos Viola, Filipa and Thorne, Jeremy and Edmonds, Barrie and Schneider, Till and Eichele, Tom and Debener, Stefan},
doi = {10.1016/j.clinph.2009.01.015},
journal = {Clinical Neurophysiology},
number = {5},
pages = {868-877},
title = {Semi-Automatic Identification of Independent Components Representing {{EEG}} Artifact},
volume = {120},
year = {2009}
}
@article{ChambonEtAl2018,
author = {Chambon, Stanislas and Galtier, Mathieu N. and Arnal, Pierrick J. and Wainrib, Gilles and Gramfort, Alexandre},
doi = {10.1109/TNSRE.2018.2813138},
journal = {IEEE Transactions on Neural Systems and Rehabilitation Engineering},
number = {4},
pages = {758-769},
title = {A Deep Learning Architecture for Temporal Sleep Stage Classification Using Multivariate and Multimodal Time Series},
volume = {26},
year = {2018}
}
@article{ChenEtAl2010,
author = {Chen, Yilun and Wiesel, Ami and Eldar, Yonina C. and Hero, Alfred O.},
doi = {10.1109/TSP.2010.2053029},
journal = {IEEE Transactions on Signal Processing},
number = {10},
pages = {5016-5029},
title = {Shrinkage Algorithms for {{MMSE}} Covariance Estimation},
volume = {58},
year = {2010}
}
@article{CichyEtAl2014,
author = {Cichy, Radoslaw Martin and Pantazis, Dimitrios and Oliva, Aude},
doi = {10.1038/nn.3635},
journal = {Nature Neuroscience},
number = {3},
pages = {455-462},
title = {Resolving Human Object Recognition in Space and Time},
volume = {17},
year = {2014}
}
@book{Cohen2014,
place={Cambridge, MA},
title={Analyzing Neural Time Series Data: Theory and Practice},
publisher={MIT Press},
author={Cohen, Mike X.},
year={2014}
}
@article{Cohen2019,
author={Cohen, Michael X},
doi = {10.1016/j.neuroimage.2019.05.048},
journal = {NeuroImage},
pages = {81-86},
title = {A better way to define and describe {Morlet} wavelets for time-frequency analysis},
volume = {199},
year = {2019}
}
@article{CohenHosaka1976,
author = {Cohen, David and Hosaka, Hidehiro},
doi = {10.1016/S0022-0736(76)80041-6},
journal = {Journal of Electrocardiology},
number = {4},
pages = {409-417},
title = {Part {{II}} Magnetic Field Produced by a Current Dipole},
volume = {9},
year = {1976}
}
@article{CrosseEtAl2016,
author = {Crosse, Michael J. and Di Liberto, Giovanni M. and Bednar, Adam and Lalor, Edmund C.},
doi = {10.3389/fnhum.2016.00604},
journal = {Frontiers in Human Neuroscience},
shorttitle = {The Multivariate Temporal Response Function ({{mTRF}}) Toolbox},
title = {The Multivariate Temporal Response Function ({{mTRF}}) Toolbox: A {{MATLAB}} Toolbox for Relating Neural Signals to Continuous Stimuli},
volume = {10},
year = {2016}
}
@article{DahneEtAl2014,
author = {Dähne, Sven and Meinecke, Frank C. and Haufe, Stefan and Höhne, Johannes and Tangermann, Michael and Müller, Klaus-Robert and Nikulin, Vadim V.},
doi = {10.1016/j.neuroimage.2013.07.079},
journal = {NeuroImage},
pages = {111-122},
shorttitle = {{{SPoC}}},
title = {{{SPoC}}: A Novel Framework for Relating the Amplitude of Neuronal Oscillations to Behaviorally Relevant Parameters},
volume = {86},
year = {2014}
}
@article{DalalEtAl2008,
author = {Dalal, Sarang S. and Guggisberg, Adrian G. and Edwards, Erik and Sekihara, Kensuke and Findlay, Anne M. and Canolty, Ryan T. and Berger, Mitchel S. and Knight, Robert T. and Barbaro, Nicholas M. and Kirsch, Heidi E. and Nagarajan, Srikantan S.},
doi = {10.1016/j.neuroimage.2008.01.023},
journal = {NeuroImage},
number = {4},
pages = {1686-1700},
shorttitle = {Five-Dimensional Neuroimaging},
title = {Five-Dimensional Neuroimaging: Localization of the Time–Frequency Dynamics of Cortical Activity},
volume = {40},
year = {2008}
}
@article{DaleEtAl1999,
author = {Dale, Anders M. and Fischl, Bruce and Sereno, Martin I.},
doi = {10.1006/nimg.1998.0395},
journal = {NeuroImage},
number = {2},
pages = {179-194},
title = {Cortical Surface-Based Analysis: {{I}}. Segmentation and Surface Reconstruction},
volume = {9},
year = {1999}
}
@article{DaleEtAl2000,
author = {Dale, Anders M. and Liu, Arthur K. and Fischl, Bruce R. and Buckner, Randy L. and Belliveau, John W. and Lewine, Jeffrey D. and Halgren, Eric},
doi = {10.1016/S0896-6273(00)81138-1},
journal = {Neuron},
number = {1},
pages = {55-67},
title = {Dynamic Statistical Parametric Mapping: Combining {{fMRI}} and {{MEG}} for High-Resolution Imaging of Cortical Activity},
volume = {26},
year = {2000}
}
@article{DaleSereno1993,
author = {Dale, Anders M. and Sereno, Martin I.},
doi = {10.1162/jocn.1993.5.2.162},
journal = {Journal of Cognitive Neuroscience},
number = {2},
pages = {162-176},
shorttitle = {Improved Localization of Cortical Activity by Combining {{EEG}} and {{MEG}} with {{MRI}} Cortical Surface Reconstruction},
title = {Improved Localization of Cortical Activity by Combining {{EEG}} and {{MEG}} with {{MRI}} Cortical Surface Reconstruction: A Linear Approach},
volume = {5},
year = {1993}
}
@article{DammersEtAl2008,
author = {Dammers, Jürgen and Schiek, Michael and Boers, Frank and Silex, Carmen and Zvyagintsev, Mikhail and Pietrzyk, Uwe and Mathiak, Klaus},
doi = {10.1109/TBME.2008.926677},
journal = {IEEE Transactions on Biomedical Engineering},
number = {10},
pages = {2353-2362},
title = {Integration of Amplitude and Phase Statistics for Complete Artifact Removal in Independent Components of Neuromagnetic Recordings},
volume = {55},
year = {2008}
}
@article{DarvasEtAl2006,
author = {Darvas, Felix and Ermer, John J. and Mosher, John C. and Leahy, Richard M.},
doi = {10.1002/hbm.20171},
journal = {Human Brain Mapping},
number = {2},
pages = {129-143},
title = {Generic Head Models for Atlas-Based {{EEG}} Source Analysis},
volume = {27},
year = {2006}
}
@article{DelormeMakeig2004,
title = {{EEGLAB}: an open source toolbox for analysis of single-trial {EEG} dynamics including independent component analysis},
volume = {134},
issn = {0165-0270},
shorttitle = {{EEGLAB}},
doi = {10.1016/j.jneumeth.2003.10.009},
language = {eng},
number = {1},
journal = {Journal of Neuroscience Methods},
author = {Delorme, Arnaud and Makeig, Scott},
month = mar,
year = {2004},
pmid = {15102499},
keywords = {Computer Simulation, Electroencephalography, Evoked Potentials, Software},
pages = {9--21}
}
@article{DestrieuxEtAl2010,
author = {Destrieux, Christophe and Fischl, Bruce and Dale, Anders and Halgren, Eric},
doi = {10.1016/j.neuroimage.2010.06.010},
journal = {NeuroImage},
number = {1},
pages = {1-15},
title = {Automatic Parcellation of Human Cortical Gyri and Sulci Using Standard Anatomical Nomenclature},
volume = {53},
year = {2010}
}
@inproceedings{DharmapraniEtAl2016,
address = {Orlando, FL, USA},
title = {A comparison of independent component analysis algorithms and measures to discriminate between {EEG} and artifact components},
isbn = {978-1-4577-0220-4},
doi = {10.1109/EMBC.2016.7590828},
booktitle = {2016 38th {Annual} {International} {Conference} of the {IEEE} {Engineering} in {Medicine} and {Biology} {Society} ({EMBC})},
publisher = {IEEE},
author = {Dharmaprani, Dhani and Nguyen, Hoang K. and Lewis, Trent W. and DeLosAngeles, Dylan and Willoughby, John O. and Pope, Kenneth J.},
year = {2016},
pages = {825--828},
}
@article{DufauEtAl2015,
author = {Dufau, Stéphane and Grainger, Jonathan and Midgley, Katherine J. and Holcomb, Phillip J.},
doi = {10.1177/0956797615603934},
journal = {Psychological Science},
number = {12},
pages = {1887-1897},
shorttitle = {A Thousand Words Are Worth a Picture},
title = {A Thousand Words Are Worth a Picture: Snapshots of Printed-Word Processing in an Event-Related Potential Megastudy},
volume = {26},
year = {2015}
}
@book{EfronHastie2016,
address = {{New York}},
author = {Efron, Bradley and Hastie, Trevor},
isbn = {978-1-107-14989-2},
number = {5},
publisher = {{Cambridge University Press}},
series = {Institute of {{Mathematical Statistics}} Monographs},
shorttitle = {Computer Age Statistical Inference},
title = {Computer Age Statistical Inference: Algorithms, Evidence, and Data Science},
url = {https://hastie.su.domains/CASI/},
year = {2016}
}
@article{EngemannGramfort2015,
author = {Engemann, Denis A. and Gramfort, Alexandre},
doi = {10.1016/j.neuroimage.2014.12.040},
journal = {NeuroImage},
pages = {328-342},
title = {Automated Model Selection in Covariance Estimation and Spatial Whitening of {{MEG}} and {{EEG}} Signals},
volume = {108},
year = {2015}
}
@article{FischlEtAl1999,
author = {Fischl, Bruce and Sereno, Martin I. and Dale, Anders M.},
doi = {10.1006/nimg.1998.0396},
journal = {NeuroImage},
number = {2},
pages = {195-207},
title = {Cortical Surface-Based Analysis: {{II}}. Inflation, Flattening, and a Surface-Based Coordinate System},
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year = {1999}
}
@article{FischlEtAl1999a,
author = {Fischl, Bruce and Sereno, Martin I. and Tootell, Roger B.H. and Dale, Anders M.},
doi = {10.1002/(SICI)1097-0193(1999)8:4<272::AID-HBM10>3.0.CO;2-4},
journal = {Human Brain Mapping},
number = {4},
pages = {272-284},
title = {High-Resolution Intersubject Averaging and a Coordinate System for the Cortical Surface},
volume = {8},
year = {1999}
}
@article{FischlEtAl2004,
author = {Fischl, Bruce and Salat, David H. and {van der Kouwe}, André J.W. and Makris, Nikos and Ségonne, Florent and Quinn, Brian T. and Dale, Anders M.},
doi = {10.1016/j.neuroimage.2004.07.016},
journal = {NeuroImage},
pages = {S69-S84},
title = {Sequence-Independent Segmentation of Magnetic Resonance Images},
volume = {23},
year = {2004}
}
@article{FishburnEtAl2019,
title={Temporal derivative distribution repair (TDDR): a motion correction method for {fNIRS}},
doi = {10.1016/j.neuroimage.2018.09.025},
author={Fishburn, Frank A and Ludlum, Ruth S and Vaidya, Chandan J and Medvedev, Andrei V},
journal={NeuroImage},
volume={184},
pages={171--179},
year={2019},
publisher={Elsevier}
}
@article{GlasserEtAl2016,
author = {Glasser, Matthew F. and Coalson, Timothy S. and Robinson, Emma C. and Hacker, Carl D. and Harwell, John and Yacoub, Essa and Ugurbil, Kamil and Andersson, Jesper and Beckmann, Christian F. and Jenkinson, Mark and Smith, Stephen M. and Van Essen, David C.},
doi = {10.1038/nature18933},
journal = {Nature},
number = {7615},
pages = {171-178},
title = {A multi-modal parcellation of human cerebral cortex},
volume = {536},
year = {2016}
}
@article{GlasserEtAl2016supp,
author = {Glasser, Matthew F. and Coalson, Timothy S. and Robinson, Emma C. and Hacker, Carl D. and Harwell, John and Yacoub, Essa and Ugurbil, Kamil and Andersson, Jesper and Beckmann, Christian F. and Jenkinson, Mark and Smith, Stephen M. and Van Essen, David C.},
url = {https://static-content.springer.com/esm/art%3A10.1038%2Fnature18933/MediaObjects/41586_2016_BFnature18933_MOESM330_ESM.pdf#page=2},
journal = {Nature},
number = {7615},
title = {Supplementary neuroanatomical results for “{A} multi-modal parcellation of human cerebral cortex”},
volume = {536},
year = {2016}
}
@article{GoldbergerEtAl2000,
author = {Goldberger, Ary L. and Amaral, Luis A. N. and Glass, Leon and Hausdorff, Jeffrey M. and Ivanov, Plamen Ch. and Mark, Roger G. and Mietus, Joseph E. and Moody, George B. and Peng, Chung-Kang and Stanley, H. Eugene},
doi = {10.1161/01.CIR.101.23.e215},
journal = {Circulation},
number = {23},
shorttitle = {{{PhysioBank}}, {{PhysioToolkit}}, and {{PhysioNet}}},
title = {{{PhysioBank}}, {{PhysioToolkit}}, and {{PhysioNet}}: {{Components}} of a New Research Resource for Complex Physiologic Signals},
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year = {2000}
}
@article{GoldenholzEtAl2009,
author = {Goldenholz, Daniel M. and Ahlfors, Seppo P. and Hämäläinen, Matti S. and Sharon, Dahlia and Ishitobi, Mamiko and Vaina, Lucia M. and Stufflebeam, Steven M.},
doi = {10.1002/hbm.20571},
journal = {Human Brain Mapping},
number = {4},
pages = {1077-1086},
title = {Mapping the Signal-to-Noise-Ratios of Cortical Sources in Magnetoencephalography and Electroencephalography},
volume = {30},
year = {2009}
}
@article{GoncalvesEtAl2003,
author = {Gonçalves, Sónia I. and {de Munck}, Jan Casper and Verbunt, Jeroen P. A. and Bijma, Fetsje and Heethaar, Rob M. and {Lopes da Silva}, Fernando},
doi = {10.1109/TBME.2003.812164},
journal = {IEEE Transactions on Biomedical Engineering},
number = {6},
pages = {754-767},
title = {In Vivo Measurement of the Brain and Skull Resistivities Using an {{EIT}}-Based Method and Realistic Models for the Head},
volume = {50},
year = {2003}
}
@article{GraimannEtAl2002,
author = {Graimann, Bernhard and Huggins, Jane E. and Levine, Simon P. and Pfurtscheller, Gert},
doi = {10.1016/S1388-2457(01)00697-6},
journal = {Clinical Neurophysiology},
number = {1},
pages = {43-47},
title = {Visualization of Significant {{ERD}}/{{ERS}} Patterns in Multichannel {{EEG}} and {{ECoG}} Data},
volume = {113},
year = {2002}
}
@article{GramfortEtAl2010,
author = {Alexandre Gramfort and Renaud Keriven and Maureen Clerc},
title = {Graph-Based Variability Estimation in Single-Trial Event-Related Neural Responses},
journal = {{IEEE} Transactions on Biomedical Engineering},
doi = {10.1109/tbme.2009.2037139},
year = {2010},
publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
volume = {57},
number = {5},
pages = {1051--1061},
}
@incollection{GramfortEtAl2011,
address = {{Berlin; Heidelberg}},
author = {Gramfort, Alexandre and Strohmeier, Daniel and Haueisen, Jens and Hämäläinen, Matti S. and Kowalski, Matthieu},
booktitle = {Information {{Processing}} in {{Medical Imaging}}},
doi = {10.1007/978-3-642-22092-0_49},
editor = {Székely, Gábor and Hahn, Horst K.},
isbn = {978-3-642-22091-3 978-3-642-22092-0},
pages = {600-611},
publisher = {Springer},
title = {Functional Brain Imaging with {M/EEG} Using Structured Sparsity in Time-Frequency Dictionaries},
volume = {6801},
year = {2011}
}
@article{GramfortEtAl2012,
author = {Gramfort, Alexandre and Kowalski, Matthieu and Hämäläinen, Matti S.},
doi = {10.1088/0031-9155/57/7/1937},
journal = {Physics in Medicine and Biology},
number = {7},
pages = {1937-1961},
title = {Mixed-Norm Estimates for the {M/EEG} Inverse Problem Using Accelerated Gradient Methods},
volume = {57},
year = {2012}
}
@article{GramfortEtAl2013b,
author = {Gramfort, Alexandre and Strohmeier, Daniel T. and Haueisen, Jens and Hämäläinen, Matti S. and Kowalski, Matthieu},
doi = {10.1016/j.neuroimage.2012.12.051},
journal = {NeuroImage},
pages = {410-422},
shorttitle = {Time-Frequency Mixed-Norm Estimates},
title = {Time-Frequency Mixed-Norm Estimates: Sparse {M/EEG} Imaging with Non-Stationary Source Activations},
volume = {70},
year = {2013}
}
@article{GreischarEtAl2004,
title = {Effects of electrode density and electrolyte spreading in dense array electroencephalographic recording},
volume = {115},
issn = {13882457},
doi = {10.1016/j.clinph.2003.10.028},
language = {en},
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volume = {51},
year = {2010}
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title = {Digital Filter Design for Electrophysiological Data – a Practical Approach},
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author = {Widmann, Andreas and Schröger, Erich},
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volume = {3},
year = {2012}
}
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number = {3},
pages = {553-577},
shorttitle = {Methods for First-Order Kernel Estimation},
title = {Methods for First-Order Kernel Estimation: Simple-Cell Receptive Fields from Responses to Natural Scenes},
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}
@inproceedings{WinklerEtAl2015,
address = {{Milan}},
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doi = {10.1109/EMBC.2015.7319296},
isbn = {978-1-4244-9271-8},
pages = {4101-4105},
publisher = {{IEEE}},
title = {On the Influence of High-Pass Filtering on {{ICA}}-Based Artifact Reduction in {{EEG}}-{{ERP}}},
year = {2015}
}
@inproceedings{WipfEtAl2007,
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booktitle = {Advances in Neural Information Processing Systems 19},
editor = {Schölkopf, Bernhard and Platt, John C. and Hoffman, T.},
pages = {1505-1512},
publisher = {{MIT Press}},
title = {Analysis of Empirical Bayesian Methods for Neuroelectromagnetic Source Localization},
url = {http://papers.nips.cc/paper/3089-analysis-of-empirical-bayesian-methods-for-neuroelectromagnetic-source-localization.pdf},
year = {2007}
}
@article{WipfNagarajan2009,
author = {Wipf, David and Nagarajan, Srikantan},
doi = {10.1016/j.neuroimage.2008.02.059},
journal = {NeuroImage},
number = {3},
pages = {947-966},
title = {A Unified {{Bayesian}} Framework for {{MEG}}/{{EEG}} Source Imaging},
volume = {44},
year = {2009}
}
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author = {Zhang, Zhi},
doi = {10.1088/0031-9155/40/3/001},
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year = {1995}
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author = {Kayser, Jürgen and Tenke, Craig E.},
year = {2015},
pmid = {26071227},
pmcid = {PMC4610715},
pages = {171--173}
}
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title = {A new method for off-line removal of ocular artifact},
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urldate = {2020-08-03},
journal = {Electroencephalography and Clinical Neurophysiology},
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address = {Upper Saddle River, NJ},
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title = {Discrete-{Time} {Signal} {Processing}},
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author = {Oppenheim, Alan V. and Schafer, Ronald W. and Buck, John R.},
year = {1999}
}
@book{CrochiereRabiner1983,
address = {Englewood Cliffs, NJ},
edition = {1 edition},
title = {Multirate {Digital} {Signal} {Processing}},
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publisher = {Pearson},
author = {Crochiere, Ronald E. and Rabiner, Lawrence R.},
year = {1983}
}
@article{Yao2001,
title = {A method to standardize a reference of scalp {EEG} recordings to a point at infinity},
volume = {22},
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number = {4},
journal = {Physiological Measurement},
author = {Yao, D.},
year = {2001},
pmid = {11761077},
pages = {693--711}
}
@inproceedings{StrohmeierEtAl2015,
title = {{MEG}/{EEG} {Source} {Imaging} with a {Non}-{Convex} {Penalty} in the {Time}-{Frequency} {Domain}},
doi = {10.1109/PRNI.2015.14},
booktitle = {2015 {International} {Workshop} on {Pattern} {Recognition} in {NeuroImaging}},
author = {Strohmeier, Daniel and Gramfort, Alexandre and Haueisen, Jens},
year = {2015},
pages = {21--24}
}
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author = "{Wikipedia contributors}",
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author = "{BIDS} contributors",
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@article{OReillyEtAl2021,
title = {Structural templates for imaging {EEG} cortical sources in infants},
volume = {227},
issn = {1053-8119},
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journal = {NeuroImage},
author = {O'Reilly, Christian and Larson, Eric and Richards, John E. and Elsabbagh, Mayada},
year = {2021},
pages = {117682}
}
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series = {Sharing the wealth: {Brain} {Imaging} {Repositories} in 2015},
title = {A database of age-appropriate average {MRI} templates},
volume = {124},
issn = {1053-8119},
doi = {10.1016/j.neuroimage.2015.04.055},
journal = {NeuroImage},
author = {Richards, John E. and Sanchez, Carmen and Phillips-Meek, Michelle and Xie, Wanze},
year = {2016},
pages = {1254--1259}
}
@Article{Lehmann1980,
author = {Dietrich Lehmann and Wolfgang Skrandies},
journal = {Electroencephalography and Clinical Neurophysiology},
title = {Reference-free identification of components of checkerboard-evoked multichannel potential fields},
year = {1980},
issn = {0013-4694},
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pages = {609--621},
volume = {48},
doi = {10.1016/0013-4694(80)90419-8},
publisher = {Elsevier {BV}},
}
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author = {Dietrich Lehmann and Wolfgang Skrandies},
journal = {Progress in Neurobiology},
title = {Spatial analysis of evoked potentials in man—a review},
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number = {3},
pages = {227--250},
volume = {23},
doi = {10.1016/0301-0082(84)90003-0},
publisher = {Elsevier {BV}},
}
@Article{Murray2008,
author = {Micah M. Murray and Denis Brunet and Christoph M. Michel},
journal = {Brain Topography},
title = {Topographic {ERP} Analyses: {A} Step-by-Step Tutorial Review},
year = {2008},
issn = {0896-0267},
number = {4},
pages = {249--264},
volume = {20},
doi = {10.1007/s10548-008-0054-5},
publisher = {Springer Science and Business Media {LLC}},
}
@Article{Kappenman2021,
author = {Emily S. Kappenman and Jaclyn L. Farrens and Wendy Zhang and Andrew X. Stewart and Steven J. Luck},
journal = {{NeuroImage}},
title = {{ERP} {CORE}: An open resource for human event-related potential research},
year = {2021},
issn = {1053-8119},
pages = {117465},
volume = {225},
doi = {10.1016/j.neuroimage.2020.117465},
publisher = {Elsevier {BV}},
}
@article{GenoveseEtAl2002,
title = {Thresholding of Statistical Maps in Functional Neuroimaging Using the False Discovery Rate},
journal = {NeuroImage},
volume = {15},
number = {4},
pages = {870-878},
year = {2002},
issn = {1053-8119},
doi = {https://doi.org/10.1006/nimg.2001.1037},
author = {Christopher R. Genovese and Nicole A. Lazar and Thomas Nichols},
}
@article{YaoEtAl2019,
title={Which reference should we use for {EEG} and {ERP} practice?},
author={Yao, Dezhong and Qin, Yun and Hu, Shiang and Dong, Li and Vega, Maria L Bringas and Sosa, Pedro A Vald{\'e}s},
journal={Brain topography},
volume={32},
number={4},
pages={530--549},
year={2019},
doi = {10.1007/s10548-019-00707-x},
publisher={Springer}
}
@article{PolonenkoMaddox2019,
title = {The {Parallel} {Auditory} {Brainstem} {Response}},
volume = {23},
issn = {2331-2165},
doi = {10.1177/2331216519871395},
language = {en},
journal = {Trends in Hearing},
author = {Polonenko, Melissa J. and Maddox, Ross K.},
year = {2019},
pages = {2331216519871395}
}
@article{DeledalleEtAl2014,
author = {Deledalle, Charles-Alban and Vaiter, Samuel and Fadili, Jalal and Peyré, Gabriel},
title = {Stein Unbiased GrAdient estimator of the Risk (SUGAR) for Multiple Parameter Selection},
journal = {SIAM Journal on Imaging Sciences},
volume = {7},
number = {4},
pages = {2448-2487},
year = {2014},
doi = {10.1137/140968045},
}
@InProceedings{BertrandEtAl2020,
title = { Anderson acceleration of coordinate descent },
author = {Bertrand, Quentin and Massias, Mathurin},
booktitle = {Proceedings of The 24th International Conference on Artificial Intelligence and Statistics},
pages = {1288--1296},
year = {2021},
editor = {Banerjee, Arindam and Fukumizu, Kenji},
volume = {130},
series = {Proceedings of Machine Learning Research},
month = {13--15 Apr},
publisher = {PMLR},
url = {http://proceedings.mlr.press/v130/bertrand21a.html}
}
@book{Luck2014,
title = {An Introduction to the Event-Related Potential Technique},
author = {Luck, Steven J},
year = {2014},
edition = {2nd},
publisher = {The MIT Press},
address = {Cambridge, MA},
url = {https://mitpress.mit.edu/books/introduction-event-related-potential-technique-second-edition},
isbn = {978-0-262-52585-5}
}
@article{Lopez-CalderonLuck2014,
title = {ERPLAB: An Open-Source Toolbox for the Analysis of Event-Related Potentials},
author = {Lopez-Calderon, Javier and Luck, Steven J.},
year = {2014},
journal = {Frontiers in Human Neuroscience},
volume = {8},
issn = {1662-5161},
doi = {10.3389/fnhum.2014.00213}
}
@article{LuckGaspelin2017,
title = {How to Get Statistically Significant Effects in Any {{ERP}} Experiment (and Why You Shouldn't)},
author = {Luck, Steven J. and Gaspelin, Nicholas},
year = {2017},
journal = {Psychophysiology},
volume = {54},
number = {1},
pages = {146--157},
issn = {1469-8986},
doi = {10.1111/psyp.12639},
}
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title = {The Use of Fast {{Fourier}} Transform for the Estimation of Power Spectra: {{A}} Method Based on Time Averaging over Short, Modified Periodograms},
author = {Welch, Peter D.},
year = {1967},
journal = {IEEE Transactions on Audio and Electroacoustics},
volume = {15},
number = {2},
pages = {70--73},
doi = {10.1109/TAU.1967.1161901},
}
@article{MaksymenkoEtAl2017,
title = {Strategies for statistical thresholding of source localization maps in magnetoencephalography and estimating source extent},
volume = {290},
issn = {0165-0270},
doi = {10.1016/j.jneumeth.2017.07.015},
language = {en},
journal = {Journal of Neuroscience Methods},
author = {Maksymenko, Kostiantyn and Giusiano, Bernard and Roehri, Nicolas and Bénar, Christian-G. and Badier, Jean-Michel},
month = oct,
year = {2017},
pages = {95--104}
}
@article{BeckerEtAl2017,
title = {{SISSY}: {An} efficient and automatic algorithm for the analysis of {EEG} sources based on structured sparsity},
volume = {157},
issn = {1053-8119},
shorttitle = {{SISSY}},
doi = {10.1016/j.neuroimage.2017.05.046},
language = {en},
journal = {NeuroImage},
author = {Becker, H. and Albera, L. and Comon, P. and Nunes, J. -C. and Gribonval, R. and Fleureau, J. and Guillotel, P. and Merlet, I.},
month = aug,
year = {2017},
pages = {157--172}
}
@article{YaoEtAl2005,
title = {Evaluation of different cortical source localization methods using simulated and experimental {EEG} data},
volume = {25},
issn = {1053-8119},
doi = {10.1016/j.neuroimage.2004.11.036},
language = {en},
number = {2},
journal = {NeuroImage},
author = {Yao, Jun and Dewald, Julius P. A.},
month = apr,
year = {2005},
pages = {369--382}
}
@article{StenroosHauk2013,
title = {Minimum-norm cortical source estimation in layered head models is robust against skull conductivity error},
volume = {81},
issn = {1053-8119},
doi = {10.1016/j.neuroimage.2013.04.086},
abstract = {The conductivity profile of the head has a major effect on EEG signals, but unfortunately the conductivity for the most important compartment, skull, is only poorly known. In dipole modeling studies, errors in modeled skull conductivity have been considered to have a detrimental effect on EEG source estimation. However, as dipole models are very restrictive, those results cannot be generalized to other source estimation methods. In this work, we studied the sensitivity of EEG and combined MEG+EEG source estimation to errors in skull conductivity using a distributed source model and minimum-norm (MN) estimation. We used a MEG/EEG modeling set-up that reflected state-of-the-art practices of experimental research. Cortical surfaces were segmented and realistically-shaped three-layer anatomical head models were constructed, and forward models were built with Galerkin boundary element method while varying the skull conductivity. Lead-field topographies and MN spatial filter vectors were compared across conductivities, and the localization and spatial spread of the MN estimators were assessed using intuitive resolution metrics. The results showed that the MN estimator is robust against errors in skull conductivity: the conductivity had a moderate effect on amplitudes of lead fields and spatial filter vectors, but the effect on corresponding morphologies was small. The localization performance of the EEG or combined MEG+EEG MN estimator was only minimally affected by the conductivity error, while the spread of the estimate varied slightly. Thus, the uncertainty with respect to skull conductivity should not prevent researchers from applying minimum norm estimation to EEG or combined MEG+EEG data. Comparing our results to those obtained earlier with dipole models shows that general judgment on the performance of an imaging modality should not be based on analysis with one source estimation method only.},
language = {en},
journal = {NeuroImage},
author = {Stenroos, Matti and Hauk, Olaf},
month = nov,
year = {2013},
keywords = {Electroencephalography, Inverse problem, Magnetoencephalography, Minimum-norm estimation, Skull conductivity},
pages = {265--272}
}
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title = {Removal of ocular artifact from the {EEG}: a review},
author = {Croft, R. J. and Barry, R. J.},
year = {2000},
journal = {Clinical Neurophysiology},
volume = {30},
number = {1},
pages = {5--19},
doi = {10.1016/S0987-7053(00)00055-1}
}
@article{SeymourEtAl2022,
title = {Interference suppression techniques for {OPM}-based {MEG}: {Opportunities} and challenges},
volume = {247},
issn = {1053-8119},
shorttitle = {Interference suppression techniques for {OPM}-based {MEG}},
doi = {10.1016/j.neuroimage.2021.118834},
language = {en},
journal = {NeuroImage},
author = {Seymour, Robert A. and Alexander, Nicholas and Mellor, Stephanie and O'Neill, George C. and Tierney, Tim M. and Barnes, Gareth R. and Maguire, Eleanor A.},
month = feb,
year = {2022},
pages = {118834}
}
@article{TierneyEtAl2021,
title = {Modelling optically pumped magnetometer interference in MEG as a spatially homogeneous magnetic field},
volume = {244},
issn = {1053-8119},
doi = {10.1016/j.neuroimage.2021.118484},
language = {en},
journal = {NeuroImage},
author = {Tierney, Tim M. and Alexander, Nicholas and Mellor, Stephanie and Holmes, Niall and Seymour, Robert and O'Neill, George C. and Maguire, Eleanor A. and Barnes, Gareth R.},
year = {2021},
}
@article{TierneyEtAl2022,
title = {Spherical harmonic based noise rejection and neuronal sampling with multi-axis OPMs},
journal = {NeuroImage},
volume = {258},
year = {2022},
issn = {1053-8119},
doi = {10.1016/j.neuroimage.2022.119338},
author = {Tierney, Tim M. and Mellor, Stephanie nd O'Neill, George C. and Timms, Ryan C. and Barnes, Gareth R.},
}
@article{KumaravelEtAl2022,
doi = {10.3390/s22197314},
url = {https://doi.org/10.3390/s22197314},
year = {2022},
month = sep,
publisher = {{MDPI} {AG}},
volume = {22},
number = {19},
pages = {7314},
author = {Velu Prabhakar Kumaravel and Marco Buiatti and Eugenio Parise and Elisabetta Farella},
title = {Adaptable and Robust {EEG} Bad Channel Detection Using Local Outlier Factor ({LOF})},
journal = {Sensors}
}
@article{BreunigEtAl2000,
author = {Breunig, Markus M. and Kriegel, Hans-Peter and Ng, Raymond T. and Sander, J\"{o}rg},
title = {LOF: Identifying Density-Based Local Outliers},
year = {2000},
issue_date = {June 2000},
publisher = {Association for Computing Machinery},
address = {New York, NY, USA},
volume = {29},
number = {2},
url = {https://doi.org/10.1145/335191.335388},
doi = {10.1145/335191.335388},
journal = {SIGMOD Rec.},
month = {may},
pages = {93–104},
numpages = {12},
keywords = {outlier detection, database mining}
}
@article{OyamaEtAl2015,
title = {Dry phantom for magnetoencephalography —{Configuration}, calibration, and contribution},
volume = {251},
issn = {0165-0270},
doi = {10.1016/j.jneumeth.2015.05.004},
journal = {Journal of Neuroscience Methods},
author = {Oyama, Daisuke and Adachi, Yoshiaki and Yumoto, Masato and Hashimoto, Isao and Uehara, Gen},
month = aug,
year = {2015},
pages = {24--36},
}
@inproceedings{MellotEtAl2024,
title = {Physics-informed and Unsupervised Riemannian Domain Adaptation for Machine Learning on Heterogeneous EEG Datasets},
author = {Mellot, Apolline and Collas, Antoine and Chevallier, Sylvain and Engemann, Denis and Gramfort, Alexandre},
booktitle = {Proceedings of the 32nd European Signal Processing Conference (EUSIPCO)},
year = {2024},
address = {Lyon, France}
}
Datasets
Models
