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Version 0.6 (2013-06-15)

Changelog

  • Linear (and zeroth-order) detrending for Epochs and Evoked by `Eric Larson`_
  • Label morphing between subjects by `Eric Larson`_
  • Define events based on time lag between reference and target event by `Denis Engemann`_
  • ICA convenience function implementing an automated artifact removal workflow by `Denis Engemann`_
  • Bad channels no longer included in epochs by default by `Eric Larson`_
  • Support for diagonal noise covariances in inverse methods and rank computation by `Eric Larson`_
  • Support for using CUDA in FFT-based FIR filtering (method='fft') and resampling by `Eric Larson`_
  • Optimized FFT length selection for faster overlap-add filtering by `Martin Luessi`_
  • Ability to exclude bad channels from evoked plots or shown them in red by `Martin Luessi`_
  • Option to show both hemispheres when plotting SourceEstimate with PySurfer by `Martin Luessi`_
  • Optimized Raw reading and epoching routines to limit memory copies by `Eric Larson`_
  • Advanced options to save raw files in short or double precision by `Eric Larson`_
  • Option to detect decreasing events using find_events by `Simon Kornblith`_
  • Option to change default stim_channel used for finding events by `Eric Larson`_
  • Use average patch normal from surface-oriented forward solution in inverse calculation when possible by `Eric Larson`_
  • Function to plot drop_log from Epochs instance by `Eric Larson`_
  • Estimate rank of Raw data by `Eric Larson`_
  • Support reading of BTi/4D data by `Denis Engemann`_
  • Wrapper for generating forward solutions by `Eric Larson`_
  • Averaging forward solutions by `Eric Larson`_
  • Events now contain the pre-event stim channel value in the middle column, by `Christian Brodbeck`_
  • New function mne.find_stim_steps for finding all steps in a stim channel by `Christian Brodbeck`_
  • Get information about FIFF files using mne.fiff.show_fiff() by `Eric Larson`_
  • Compute forward fields sensitivity maps by `Alex Gramfort`_ and `Eric Larson`_
  • Support reading of KIT data by `Teon Brooks`_ and `Christian Brodbeck`_
  • Raw data visualization by `Eric Larson`_
  • Smarter SourceEstimate object that contains linear inverse kernel and sensor space data for fast time-frequency transforms in source space by `Martin Luessi`_
  • Add example of decoding/MVPA on MEG sensor data by `Alex Gramfort`_
  • Add support for non-paired tests in spatiotemporal cluster stats by `Alex Gramfort`_
  • Add unified SSP-projector API for Raw, Epochs and Evoked objects by `Denis Engemann`_, `Alex Gramfort`_ `Eric Larson`_ and `Martin Luessi`_
  • Add support for delayed SSP application at evoked stage `Denis Engemann`_, `Alex Gramfort`_, `Eric Larson`_ and `Martin Luessi`_
  • Support selective parameter updating in functions taking dicts as arguments by `Denis Engemann`_
  • New ICA method sources_as_epochs to create Epochs in ICA space by `Denis Engemann`_
  • New method in Evoked and Epoch classes to shift time scale by `Mainak Jas`_
  • Added option to specify EOG channel(s) when computing PCA/SSP projections for EOG artifacts by `Mainak Jas`_
  • Improved connectivity interface to allow combinations of signals, e.g., seed time series and source estimates, by `Martin Luessi`_
  • Effective connectivity estimation using Phase Slope Index (PSI) by `Martin Luessi`_
  • Support for threshold-free cluster enhancement (TFCE) by `Eric Larson`_
  • Support for "hat" variance regularization by `Eric Larson`_
  • Access source estimates as Pandas DataFrame by `Denis Engemann`_.
  • Add example of decoding/MVPA on MEG source space data by `Denis Engemann`_
  • Add support for --tstart option in mne_compute_proj_eog.py by `Alex Gramfort`_
  • Add two-way repeated measures ANOVA for mass-univariate statistics by `Denis Engemann`_, `Eric Larson`_ and `Alex Gramfort`_
  • Add function for summarizing clusters from spatio-temporal-cluster permutation tests by `Denis Engemann`_ and `Eric Larson`_
  • Add generator support for lcmv_epochs by `Denis Engemann`_
  • Gamma-MAP sparse source localization method by `Martin Luessi`_ and `Alex Gramfort`_
  • Add regular expression and substring support for selecting parcellation labels by `Denis Engemann`_
  • New plot_evoked option for interactive and reversible selection of SSP projection vectors by `Denis Engemann`_
  • Plot 2D flat topographies with interpolation for evoked and SSPs by `Christian Brodbeck`_ and `Alex Gramfort`_
  • Support delayed SSP applicationon for 2D flat topographies by `Denis Engemann`_ and `Christian Brodbeck`_ and `Alex Gramfort`_
  • Allow picking maximum power source, a.k.a. "optimal", orientation in LCMV beamformers by `Roman Goj`_, `Alex Gramfort`_, `Denis Engemann`_ and `Martin Luessi`_
  • Add sensor type scaling parameter to plot_topo by `Andrew Dykstra`_, `Denis Engemann`_ and `Eric Larson`_
  • Support delayed SSP application in plot_topo by `Denis Engemann`_

API

  • Deprecated use of fiff.pick_types without specifying exclude -- use either [] (none), bads (bad channels), or a list of string (channel names).
  • Depth bias correction in dSPM/MNE/sLORETA make_inverse_operator is now done like in the C code using only gradiometers if present, else magnetometers, and EEG if no MEG channels are present.
  • Fixed-orientation inverse solutions need to be made using fixed=True option (using non-surface-oriented forward solutions if no depth weighting is used) to maintain compatibility with MNE C code.
  • Raw.save() will only overwrite the destination file, if it exists, if option overwrite=True is set.
  • mne.utils.set_config(), get_config(), get_config_path() moved to mne namespace.
  • Raw constructor argument proj_active deprecated -- use proj argument instead.
  • Functions from the mne.mixed_norm module have been moved to the mne.inverse_sparse module.
  • Deprecate CTF compensation (keep_comp and dest_comp) in Epochs and move it to Raw with a single compensation parameter.
  • Remove artifacts module. Artifacts- and preprocessing related functions can now be found in mne.preprocessing.

Authors

The committer list for this release is the following (preceded by number of commits):

  • 340 Eric Larson
  • 330 Denis A. Engemann
  • 204 Alexandre Gramfort
  • 72 Christian Brodbeck
  • 66 Roman Goj
  • 65 Martin Luessi
  • 37 Teon Brooks
  • 18 Mainak Jas
  • 9 Simon Kornblith
  • 7 Daniel Strohmeier
  • 6 Romain Trachel
  • 5 Yousra BEKHTI
  • 5 Brad Buran
  • 1 Andrew Dykstra
  • 1 Christoph Dinh