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Version 0.10 (2015-10-26)

Changelog

  • Add support for generalized M-way repeated measures ANOVA for fully balanced designs with :func:`mne.stats.f_mway_rm` by `Denis Engemann`_
  • Add epochs browser to interactively view and manipulate epochs with :func:`mne.viz.plot_epochs` by `Jaakko Leppakangas`_
  • Speed up TF-MxNE inverse solver with block coordinate descent by `Daniel Strohmeier`_ and `Yousra Bekhti`_
  • Speed up zero-phase overlap-add (default) filtering by a factor of up to 2 using linearity by `Ross Maddox`_ and `Eric Larson`_
  • Add support for scaling and adjusting the number of channels/time per view by `Jaakko Leppakangas`_
  • Add support to toggle the show/hide state of all sections with a single keypress ('t') in :class:`mne.Report` by `Mainak Jas`_
  • Add support for BEM model creation :func:`mne.make_bem_model` by `Eric Larson`_
  • Add support for BEM solution computation :func:`mne.make_bem_solution` by `Eric Larson`_
  • Add ICA plotters for raw and epoch components by `Jaakko Leppakangas`_
  • Add new object mne.decoding.TimeDecoding for decoding sensors' evoked response across time by `Jean-Rémi King`_
  • Add command mne freeview_bem_surfaces to quickly check BEM surfaces with Freeview by `Alex Gramfort`_.
  • Add support for splitting epochs into multiple files in :func:`mne.Epochs.save` by `Mainak Jas`_ and `Alex Gramfort`_
  • Add support for jointly resampling a raw object and event matrix to avoid issues with resampling status channels by `Marijn van Vliet`_
  • Add new method :class:`mne.preprocessing.Xdawn` for denoising and decoding of ERP/ERF by `Alexandre Barachant`_
  • Add support for plotting patterns/filters in :class:`mne.decoding.CSP` and :class:`mne.decoding.LinearModel` by `Romain Trachel`_
  • Add new object :class:`mne.decoding.LinearModel` for decoding M/EEG data and interpreting coefficients of linear models with patterns attribute by `Romain Trachel`_ and `Alex Gramfort`_
  • Add support to append new channels to an object from a list of other objects by `Chris Holdgraf`_
  • Add interactive plotting of topomap from time-frequency representation by `Jaakko Leppakangas`_
  • Add plot_topo method to Evoked object by `Jaakko Leppakangas`_
  • Add fetcher :mod:`mne.datasets.brainstorm <mne.datasets>` for datasets used by Brainstorm in their tutorials by `Mainak Jas`_
  • Add interactive plotting of single trials by right clicking on channel name in epochs browser by `Jaakko Leppakangas`_
  • New logos and logo generation script by `Daniel McCloy`_
  • Add ability to plot topomap with a "skirt" (channels outside of the head circle) by `Marijn van Vliet`_
  • Add multiple options to ICA infomax and extended infomax algorithms (number of subgaussian components, computation of bias, iteration status printing), enabling equivalent computations to those performed by EEGLAB by `Jair Montoya Martinez`_
  • Add :func:`mne.Epochs.apply_baseline` method to Epochs objects by `Teon Brooks`_
  • Add preload argument to :func:`mne.read_epochs` to enable on-demand reads from disk by `Eric Larson`_
  • Big rewrite of simulation module by `Yousra Bekhti`_, `Mark Wronkiewicz`_, `Eric Larson`_ and `Alex Gramfort`_. Allows to simulate raw with artifacts (ECG, EOG) and evoked data, exploiting the forward solution. See :func:`mne.simulation.simulate_raw`, :func:`mne.simulation.simulate_evoked` and :func:`mne.simulation.simulate_sparse_stc`
  • Add :func:`mne.Epochs.load_data` method to :class:`mne.Epochs` by `Teon Brooks`_
  • Add support for drawing topomaps by selecting an area in :func:`mne.Evoked.plot` by `Jaakko Leppakangas`_
  • Add support for finding peaks in evoked data in :func:`mne.Evoked.plot_topomap` by `Jona Sassenhagen`_ and `Jaakko Leppakangas`_
  • Add source space morphing in :func:`morph_source_spaces` and :func:`SourceEstimate.to_original_src` by `Eric Larson`_ and `Denis Engemann`_
  • Adapt corrmap function (Viola et al. 2009) to semi-automatically detect similar ICs across data sets by `Jona Sassenhagen`_ and `Denis Engemann`_ and `Eric Larson`_
  • Clarify docstring for :class:`mne.preprocessing.ICA` by `jeythekey`_
  • New mne flash_bem command to compute BEM surfaces from Flash MRI images by `Lorenzo Desantis`_, `Alex Gramfort`_ and `Eric Larson`_. See :func:`mne.bem.make_flash_bem`.
  • New gfp parameter in :func:`mne.Evoked.plot` method to display Global Field Power (GFP) by `Eric Larson`_.
  • Add mne.Report.add_slider_to_section methods to :class:`mne.Report` by `Teon Brooks`_

BUG

  • Fix mne.io.add_reference_channels not setting info[nchan] correctly by `Federico Raimondo`_
  • Fix mne.stats.bonferroni_correction reject mask output to use corrected p-values by `Denis Engemann`_
  • Fix FFT filter artifacts when using short windows in overlap-add by `Eric Larson`_
  • Fix picking channels from forward operator could return a channel ordering different from info['chs'] by `Chris Bailey`_
  • Fix dropping of events after downsampling stim channels by `Marijn van Vliet`_
  • Fix scaling in mne.viz.utils._setup_vmin_vmax by `Jaakko Leppakangas`_
  • Fix order of component selection in :class:`mne.decoding.CSP` by `Clemens Brunner`_

API

  • Rename and deprecate mne.viz.plot_topo for mne.viz.plot_evoked_topo by `Jaakko Leppakangas`_
  • Deprecated mne.decoding.transformer.ConcatenateChannels and replaced by mne.decoding.EpochsVectorizer by `Romain Trachel`_
  • Deprecated lws and renamed ledoit_wolf for the reg argument in :class:`mne.decoding.CSP` by `Romain Trachel`_
  • Redesigned and rewrote :meth:`mne.Epochs.plot` (no backwards compatibility) during the GSOC 2015 by `Jaakko Leppakangas`_, `Mainak Jas`_, `Federico Raimondo`_ and `Denis Engemann`_
  • Deprecated and renamed mne.viz.plot_image_epochs for mne.plot.plot_epochs_image by `Teon Brooks`_
  • picks argument has been added to :func:`mne.time_frequency.tfr_morlet`, :func:`mne.time_frequency.tfr_multitaper` by `Teon Brooks`_
  • mne.io.Raw.preload_data has been deprecated for :func:`mne.io.Raw.load_data` by `Teon Brooks`_
  • RawBrainVision objects now always have event channel 'STI 014', and recordings with no events will have this channel set to zero by `Eric Larson`_

Authors

The committer list for this release is the following (preceded by number of commits):

  • 273 Eric Larson
  • 270 Jaakko Leppakangas
  • 194 Alexandre Gramfort
  • 128 Denis A. Engemann
  • 114 Jona Sassenhagen
  • 107 Mark Wronkiewicz
  • 97 Teon Brooks
  • 81 Lorenzo De Santis
  • 55 Yousra Bekhti
  • 54 Jean-Rémi King
  • 48 Romain Trachel
  • 45 Mainak Jas
  • 40 Alexandre Barachant
  • 32 Marijn van Vliet
  • 26 Jair Montoya
  • 22 Chris Holdgraf
  • 16 Christopher J. Bailey
  • 7 Christian Brodbeck
  • 5 Natalie Klein
  • 5 Fede Raimondo
  • 5 Alan Leggitt
  • 5 Roan LaPlante
  • 5 Ross Maddox
  • 4 Dan G. Wakeman
  • 3 Daniel McCloy
  • 3 Daniel Strohmeier
  • 1 Jussi Nurminen