% POP_ERPIMAGE - draw an ERP-image plot of a given EEG channel or independent
% component. Uses a pop-up window if less than three (or four
% in one condition) input arguments are supplied. Calls ERPIMAGE.
% For further details see >> help erpimage
% Usage:
% >> pop_erpimage(EEG, typeplot); % pop-up a data entry window
% >> pop_erpimage(EEG, typeplot, lastcom); % pop-up a data entry window
% >> pop_erpimage(EEG, typeplot, channel); % no pop-up window
% >> pop_erpimage(EEG, typeplot, channel, projchan, title, ...
% smooth, decimate, sortingtype, sortingwin, ...
% sortingeventfield, renorm, options...);
% Graphic interface:
% "Channel or Component" - [edit box] Enter channel number or component
% number to plot. ERPIMAGE equivalent: 'channel'
% "Project to channel #" - [edit box] (for plotting independent components).
% Allow reprojecting the component activity
% to a given channel or group of channels.
% ERPIMAGE equivalent: [none]
% "Smoothing" - [text box] Smoothing parameter in number of trials.
% ERPIMAGE equivalent: 'smooth'
% "Downsampling" - [edit box] Decimate parameter.
% ERPIMAGE equivalent: 'decimate'
% "Time limits" - [edit box] Enter the time limits in milliseconds.
% ERPIMAGE equivalent: the 1st and 2nd parameters of the 'limit' array
% "Figure title" - [edit box] Enter the figure title here. If empty, a title
% is automatically generated. ERPIMAGE equivalent: 'title'
% "Plot scalp map" - [checkbox] Setting this option plot a scalp map of the
% channel location (or component topography) next to the
% erpimage. ERPIMAGE equivalent: 'topo'
% "plot ERP" - [checkbox] Setting this option plot the channel or component
% ERP below the ERP image. ERPIMAGE equivalent: 'erp'
% "Plot colorbar" - [checkbox] Plot the colorbar on the right of the erpimage.
% ERPIMAGE equivalent: 'cbar'
% "ERP limits" - [edit box] Set the minimum and maximum value for the ERP plot
% ERPIMAGE equivalent: 3rd and 4th parameters of the 'limit' array
% "Color limits" - [edit box] Set the color limits for the ERP image.
% ERPIMAGE equivalent: 'caxis'
% "Epoch sorting field" - [button and edit box] Specify the event field which
% values will be used to sort the trials. For instance, if you
% select the 'latency' fields, trials will be sorted by the
% latency of the selected events.
% ERPIMAGE equivalent: 'sortingeventfield'
% "Event type(s)" - [button and edit box] Specify which event subset to select,
% based on the event 'type' field values (to scan for event types, use
% menu Edit > Events values and look at the values of the 'type'
% field). For instance, entering type 'rt' (if defined) and field
% 'latency' in option above will sort trials on reaction time latencies.
% When several selected events are present in individual trials,
% the first event values are used for sorting and a warning is issued.
% ERPIMAGE equivalent: 'sortingtype'
% "Event time range" - [edit box] Specify which event subset to select based on
% event latency values. As the option above, this further restrains
% the selection of events. For example, entering [200 300] in this
% box, 'rt' for the event type (above), and 'latency' for the
% epoch sorting field will select trials with reaction-time latencies
% in between 200 and 300 ms. Trials with no such event will not be
% included in the ERP-image plot. ERPIMAGE equivalent: 'sortingwin'
% "rescale" - [edit box] 'yes', 'no', or a Matlab formula.
% ERPIMAGE equivalent: 'renorm'
% "align" - [edit box] Set this to 'Inf' to re-align the individual trials
% on the median latency of the selected events. Else, enter an epoch time
% (in ms) to align the events to (Ex: 0). ERPIMAGE equivalent: 'align'
% "Don't sort by value" - [checkbox] Check this box if you do not want to
% sort the trials but do want to plot the selected event values.
% ERPIMAGE equivalent: 'nosort'
% "Don't plot value" - [checkbox] Check this box if you do not want to
% plot the selected event values, but still want to sort
% the data trials according to these values.
% ERPIMAGE equivalent: 'noplot'
% "Sort by phase > Frequency" - [edit box] Specify the frequency or frequency
% range for sorting trials by phase. ERPIMAGE equivalent:
% 3rd and 4th inputs to 'phasesort'
% "Window center (ms)" - [edit box] ERPIMAGE equivalent: 1st 'phasesort' input
% "Percent low-amp. trials to ignore" - [edit box] ERPIMAGE equivalent:
% 2nd 'phasesort' input
% "Wavelet cycles" - [text] Number of wavelet cycles used for spectral decomposition
% at the specified latency. To change this, see "More options" {default: 3}
% "Inter-trial coherence options > Frequency" - [edit box] Frequency at which
% to compute coherence. Constrained to be the same as the
% "Sort by phase > Frequency" edit box. ERPIMAGE equivalent: 'coher'
% "Signif. level" - [edit box] Coherence significance cutoff, as a proability
% (Ex: .05). ERPIMAGE equivalent: 'signif'
% "Amplitude limit" - [edit box] Amplitude limits [min max] for the data power
% plot at the selected frequency. ERPIMAGE equivalent:
% 5th and 6th inputs to 'limit'
% "Coher limits" - [edit box] Upper limit (<=1) for the coherence
% plot. ERPIMAGE equivalent: 7th and 8th inputs of 'limit'
% "Image amps" - [checkbox] Check this box for plotting the spectral amplitude
% image at the selected frequency (instead of plotting EEG potential).
% ERPIMAGE equivalent: 'plotamp'
% "Plot spectrum" - [edit box] Plot the channel or component data spectrum in
% the top right corner of the ERP image. ERPIMAGE equivalent: 'spec'
% "Baseline ampl." - [edit box] Baseline amplitude for data power plot at the
% selected frequency. ERPIMAGE equivalent: 7th inputs of 'limit'
% "Mark times" - [edit box] Time(s) in ms to plot vertical lines.
% ERPIMAGE equivalent: 'vert'
% "More options" - [edit box] Enter 'key', 'value' sequences. Other ERPIMAGE
% options not handled by this interface, including: 'erpstd' to
% plot the ERP standard deviation; 'auxvar' to plot auxiliary
% variables; 'ampsort' to sort trials based on amplitude at
% the selected frequency, etc. For further information see
% >> help ERPIMAGE
% Inputs:
% EEG - dataset structure
% typeplot - 1=channel, 0=component {default: 1}
% lastcom - string containing previous pop_erpimage command (from LASTCOM)
% or from the previous function call output. The values from this
% function call are used as default in the graphic interface.
%
% Commandline options:
% channel - Index of channel or component(s) to plot {default: 1}
% projchan - Channel to back-project the selected component(s) to.
% If plotting channel activity, this argument is ignored.
% If [], the ICA component activation is plotted {default []}.
% title - ['string'] Plot title {default: []}
% smooth - Smoothing parameter (number of trials). {Default: 5}
% ERPIMAGE equivalent: 'avewidth'
% decimate - Decimate parameter (i.e. ratio of trials_in/trials_out).
% ERPAIMGE equivalent: 'decimate' {Default: 0}
% sortingtype - Sorting event type(s) ([int vector]; []=all). See Notes below.
% Either a string or an integer.
% sortingwin - Sorting event window [start, end] in seconds ([]=whole epoch)
% sortingeventfield - Sorting field name. {default: none}. See Notes below.
% options - ERPIMAGE options, separated by commas (Ex: 'erp', 'cbar').
% {Default: none}. For further details see >> erpimage help
%
% Outputs from pop-up:
% String containing the command used to evaluate this plotting function
% (saved by EEGLAB as LASTCOM). Enter it as the 'lastcom' input to restore
% the previous parameters as defaults in a new POP_ERPIMAGE pop-up window
%
% Outputs from commandline:
% Same as ERPIMAGE. Note: No outputs are returned when a window pops-up
% to ask for additional arguments
%
% Notes:
% 1) A new figure is created only when the pop-up window is called,
% so you may call this command with >3 args to draw in SBPLOT axes.
% 2) To sort epochs, first define the event field to be used with
% the argument 'sortingeventfield' (for instance 'latency'). Then,
% because there may be several events with different latencies in a
% given epoch, it is possible to consider only a subsets of events
% using the 'sortingtype' and 'sortingwin' arguments. The
% 'sortingtype' argument selects events with definite types. The
% 'sortingwin' argument helps to define a specific time window in the
% epoch to select events. For instance the epoch time range may be -1
% to 2 seconds but one may want to select events only in the range 0
% to 1 second. These three parameters are forwarded to the function
% EEG_GETEPOCHEVENT, whose help message contains more details.
%
% Author: Arnaud Delorme, CNL / Salk Institute, 2001
%
% See also: EEGLAB, ERPIMAGE, EEG_GETEPOCHEVENT
% Copyright (C) 2001 Arnaud Delorme, Salk Institute, arno@salk.edu
%
% This file is part of EEGLAB, see http://www.eeglab.org
% for the documentation and details.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions are met:
%
% 1. Redistributions of source code must retain the above copyright notice,
% this list of conditions and the following disclaimer.
%
% 2. Redistributions in binary form must reproduce the above copyright notice,
% this list of conditions and the following disclaimer in the documentation
% and/or other materials provided with the distribution.
%
% THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
% AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
% IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
% ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
% LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
% CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
% SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
% CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
% ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
% THE POSSIBILITY OF SUCH DAMAGE.
% 01-25-02 reformated help & license -ad
% 02-12-02 added new event format compatibility -ad
% 02-15-02 text interface editing -sm & ad
% 03-07-02 add the eeglab computeica options -ad
% 02-15-02 modified the function according to the new event/epoch structure -ad
% 03-18-02 added title -ad & sm
% 04-04-02 added outputs -ad & sm
function varargout = pop_erpimage( EEG, typeplot, channel, projchan, titleplot, smooth, decimate, sortingtype, ...
sortingwin, sortingeventfield, varargin)
varargout{1} = '';
if nargin < 1
help pop_erpimage;
return;
end
if typeplot == 0 && isempty(EEG.icasphere)
error('no ICA data for this set, first run ICA');
end;
if EEG.trials == 1
error('erpimage of one trial cannot be plotted');
end;
if nargin < 2
typeplot = 1; %1=signal; 0=component
end
lastcom = [];
if nargin < 3
popup = 1;
else
popup = ischar(channel) | isempty(channel);
if ischar(channel)
lastcom = channel;
end
end
opt = [];
if popup
% get contextual help
% -------------------
erpimagefile = which('erpimage.m');
[txt2 vars2] = gethelpvar(erpimagefile);
txt = { txt2{:}};
vars = { vars2{:}};
% [txt vars] = gethelpvar('erpimopt.m');
% txt = { txt{:} txt2{:}};
% vars = { vars{:} vars2{:}};
opt.topo = getkeyval(lastcom, 'topo', 'present', 1);
opt.fieldname = getkeyval(lastcom, 10);
opt.type = getkeyval(lastcom, 8);
opt.renorm = getkeyval(lastcom, 'renorm','', 'no');
opt.erp = fastif(getkeyval(lastcom, '''erp''', 'present', 1), 'on', 'off');
opt.cbar = fastif(getkeyval(lastcom, 'cbar', 'present', 1), 'on', 'off');
opt.nosort = fastif(getkeyval(lastcom, 'nosort', 'present', 0), 'on', 'off');
opt.noplot = fastif(getkeyval(lastcom, 'noplot', 'present', 0), 'on', 'off');
opt.plotamps = fastif(getkeyval(lastcom, 'plotamps', 'present', 0), 'on', 'off');
opt.index = str2num(getkeyval(lastcom,3,[],'1'));
opt.smoothing = str2num(getkeyval(lastcom, 6, [], int2str(min(max(EEG.trials-5,0), 10))));
opt.downsampling = str2num(getkeyval(lastcom, 7, [], '1'));
opt.caxis = str2num(getkeyval(lastcom, 'caxis'));
opt.eventrange = str2num(getkeyval(lastcom, 9));
opt.align = str2num(getkeyval(lastcom, 'align'));
opt.phasesort = str2num(getkeyval(lastcom, 'phasesort'));
opt.coher = str2num(getkeyval(lastcom, 'coher'));
opt.spec = str2num(getkeyval(lastcom, 'spec'));
opt.vert = str2num(getkeyval(lastcom, 'vert'));
opt.limits = str2num(getkeyval(lastcom, 'limits'));
opt.limits = [ opt.limits NaN NaN NaN NaN NaN NaN NaN NaN NaN ]; opt.limits = opt.limits(1:9);
opt.coher = [ opt.coher NaN NaN NaN NaN NaN NaN NaN NaN NaN ]; opt.coher = opt.coher(1:3);
opt.phasesort = [ opt.phasesort NaN NaN NaN NaN NaN NaN NaN NaN NaN ]; opt.phasesort = opt.phasesort(1:4);
if isnan(opt.limits(1)), opt.limits(1:2) = 1000*[EEG.xmin EEG.xmax]; end
commandphase = [ 'if ~isempty(get(findobj(''parent'', gcbf, ''tag'', ''phase''),''string'')),' ...
' if ~isempty(get(findobj(''parent'', gcbf, ''tag'', ''coher''),''string'')), ' ...
' set(findobj(''parent'', gcbf, ''tag'', ''coher''), ''string'', get(findobj(''parent'', gcbf, ''tag'', ''phase''),''string''));' ...
'end; end;' ];
commandcoher = [ 'if ~isempty(get(findobj(''parent'', gcbf, ''tag'', ''coher''),''string'')),' ...
' if ~isempty(get(findobj(''parent'', gcbf, ''tag'', ''phase''),''string'')), ' ...
' set(findobj(''parent'', gcbf, ''tag'', ''phase''), ''string'', get(findobj(''parent'', gcbf, ''tag'', ''coher''),''string''));' ...
'end; end;' ];
commandfield = ['tmpEEG = get(gcbf, ''userdata''); if isempty(tmpEEG.event)' ...
' errordlg2(''No events'');' ...
'else' ...
' tmpfieldnames = fieldnames(tmpEEG.event);' ...
' [tmps,tmpv] = listdlg2(''PromptString'', ''Select fields'', ''SelectionMode'',''single'',''ListString'', tmpfieldnames);' ...
' if tmpv' ...
' set(findobj(''parent'', gcbf, ''tag'', ''field''), ''string'', tmpfieldnames{tmps});' ...
' end;' ...
'end;' ...
'if isempty(get(findobj(''parent'', gcbf, ''tag'', ''type''), ''string'')),' ...
' warndlg2(''Do not forget to select an event type in the next edit box'');' ...
'end;' ...
'clear tmpEEG tmps tmpv tmpfieldnames;' ];
commandtype = [ 'tmpEEG = get(gcbf, ''userdata''); if ~isfield(tmpEEG.event, ''type'')' ...
' errordlg2(''No type field'');' ...
'else' ...
' tmpevent = tmpEEG.event;' ...
' if isnumeric(tmpEEG.event(1).type),' ...
' [tmps,tmpstr] = pop_chansel(unique([ tmpevent.type ]));' ...
' else,' ...
' [tmps,tmpstr] = pop_chansel(unique({ tmpevent.type }));' ...
' end;' ...
' if ~isempty(tmps)' ...
' set(findobj(''parent'', gcbf, ''tag'', ''type''), ''string'', tmpstr);' ...
' end;' ...
'end;' ...
'if isempty(get(findobj(''parent'', gcbf, ''tag'', ''field''), ''string'')),' ...
' warndlg2(''Do not forget to select an event type in the previous edit box'');' ...
'end;' ...
'clear tmpEEG tmps tmpv tmpstr tmpevent tmpfieldnames;' ];
commandchan = 'tmpEEG = get(gcbf, ''userdata''); tmpchanlocs = tmpEEG(1).chanlocs; [tmp tmpval] = pop_chansel({tmpchanlocs.labels}, ''withindex'', ''on'', ''selectionmode'', ''single''); set(findobj(gcbf, ''tag'', ''chan''), ''string'',tmpval); clear tmpEEG tmp tmpchanlocs tmpval';
geometry = { [1 1 0.4 0.5 2.1] [1 1 1 1 1] [1 1 1 1 1] [1 1 1 1 1] [1] [1] [1 1 1 0.8 0.8 1.2] [1 1 1 0.8 0.8 1.2] [1] [1] ...
[1.6 1.7 1.2 1 .5] [1.6 1.7 1.2 1 .5] [1] [1] [1.5 1 1 1 1] [1.5 1 1 1 1] [1] [1] [1.5 1 1 2.2] [1.5 1 1 2.2]};
uilist = { { 'Style', 'text', 'string', fastif(typeplot, 'Channel', 'Component(s)'), 'fontweight', 'bold' } ...
{ 'Style', 'edit', 'string', num2str(opt.index), 'tag', 'chan' } ...
{ 'style' 'pushbutton' 'string' '...', 'enable' fastif(~isempty(EEG(1).chanlocs) && typeplot, 'on', 'off') 'callback' commandchan } ...
{ 'Style', 'text', 'string', 'Fig. title', 'fontweight', 'bold' } ...
{ 'Style', 'edit', 'string', '', 'tag', 'title' } ...
...
{ 'Style', 'text', 'string', 'Smoothing', 'fontweight', 'bold', 'tooltipstring', context('avewidth',vars,txt) } ...
{ 'Style', 'edit', 'string', num2str(opt.smoothing), 'tag', 'smooth' } ...
{ 'Style', 'checkbox', 'string', 'Plot scalp map', 'tooltipstring', 'plot a 2-d head map (vector) at upper left', ...
'value', opt.topo, 'tag', 'plotmap' } { } { } ...
{ 'Style', 'text', 'string', 'Downsampling', 'fontweight', 'bold', 'tooltipstring', context('decimate',vars,txt) } ...
{ 'Style', 'edit', 'string', num2str(opt.downsampling), 'tag', 'decimate' } ...
{ 'Style', 'checkbox', 'string', 'Plot ERP', 'tooltipstring', context('erp',vars,txt), 'value', fastif(strcmpi(opt.erp, 'on'), 1,0), 'tag', 'erp' } ...
{ 'Style', 'text', 'string', fastif(typeplot, 'ERP limits (uV)','ERP limits'), 'tooltipstring', [ 'Plotting limits for ERP trace [min_uV max_uV]' 10 '{Default: ERP data limits}'] } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.limits(3)), num2str(opt.limits(3:4)), ''), 'tag', 'limerp' } ...
{ 'Style', 'text', 'string', 'Time limits (ms)', 'fontweight', 'bold', 'tooltipstring', 'Select time subset in ms' } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.limits(1)), num2str(opt.limits(1:2)), ''), 'tag', 'limtime' } ...
{ 'Style', 'checkbox', 'string', 'Plot colorbar','tooltipstring', context('caxis',vars,txt), 'value', fastif(strcmpi(opt.cbar, 'on'), 1,0), 'tag', 'cbar' } ...
{ 'Style', 'text', 'string', 'Color limits (see Help)','tooltipstring', context('caxis',vars,txt) } ...
{ 'Style', 'edit', 'string', num2str(opt.caxis), 'tag', 'caxis' } ...
{} ...
{ 'Style', 'text', 'string', 'Sort/align trials by epoch event values', 'fontweight', 'bold'} ...
{ 'Style', 'pushbutton', 'string', 'Epoch-sorting field', 'callback', commandfield, ...
'tooltipstring', 'Epoch-sorting event field name (Ex: latency; default: no sorting):' } ...
{ 'Style', 'pushbutton', 'string', 'Event type(s)', 'callback', commandtype, 'tooltipstring', ['Event type(s) subset (default: all):' 10 ...
'(See ''/Edit/Edit event values'' for event types)'] } ...
{ 'Style', 'text', 'string', 'Event time range', 'tooltipstring', [ 'Sorting event window [start, end] in milliseconds (default: whole epoch):' 10 ...
'events are only selected within this time window (can be useful if several' 10 ...
'events of the same type are in the same epoch, or for selecting trials with given response time)']} ...
{ 'Style', 'text', 'string', 'Rescale', 'tooltipstring', 'Rescale sorting variable to plot window (yes|no|a*x+b)(Ex:3*x+2):' } ...
{ 'Style', 'text', 'string', 'Align', 'tooltipstring', context('align',vars,txt) } ...
{ 'Style', 'checkbox', 'string', 'Don''t sort by value', 'tooltipstring', context('nosort',vars,txt), 'value', fastif(strcmpi(opt.nosort, 'on'), 1,0), 'tag', 'nosort' } ...
{ 'Style', 'edit', 'string', opt.fieldname, 'tag', 'field' } ...
{ 'Style', 'edit', 'string', opt.type, 'tag', 'type' } ...
{ 'Style', 'edit', 'string', num2str(opt.eventrange), 'tag', 'eventrange' } ...
{ 'Style', 'edit', 'string', opt.renorm, 'tag', 'renorm' } ...
{ 'Style', 'edit', 'string', num2str(opt.align), 'tag', 'align' } ...
{ 'Style', 'checkbox', 'string', 'Don''t plot values', 'tooltipstring', context('noplot',vars,txt), 'value', fastif(strcmpi(opt.noplot, 'on'), 1,0), 'tag', 'noplot' } ...
{} ...
{ 'Style', 'text', 'string', 'Sort trials by phase', 'fontweight', 'bold'} ...
{ 'Style', 'text', 'string', 'Frequency (Hz | minHz maxHz)', 'tooltipstring', ['sort by phase at maximum-power frequency' 10 ...
'in the data within the range [minHz,maxHz]' 10 '(overrides frequency specified in ''coher'' flag)'] } ...
{ 'Style', 'text', 'string', 'Percent low-amp. trials to ignore', 'tooltipstring', ['percent of trials to reject for low' ...
'amplitude. Else,' 10 'if prct is in the range [-100,0] -> percent to reject for high amplitude'] } ...
{ 'Style', 'text', 'string', 'Window center (ms)', 'tooltipstring', 'Center time of the n-cycle window' } ...
{ 'Style', 'text', 'string', 'Wavelet cycles', 'tooltipstring', 'cycles per wavelet window' } {}...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.phasesort(3)),num2str(opt.phasesort(3:4)),'') 'tag', 'phase', 'callback', commandphase } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.phasesort(2)),num2str(opt.phasesort(2)),''), 'tag', 'phase2' } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.phasesort(1)),num2str(opt.phasesort(1)),''), 'tag', 'phase3' } ...
{ 'Style', 'text', 'string', ' 3' } {}...
{} ...
{ 'Style', 'text', 'string', 'Inter-trial coherence options', 'fontweight', 'bold'} ...
{ 'Style', 'text', 'string', 'Frequency (Hz | minHz maxHz)', 'tooltipstring', [ '[freq] -> plot erp plus amp & coher at freq (Hz)' 10 ...
'[minHz maxHz] -> find max in frequency range' 10 '(or at phase freq above, if specified)']} ...
{ 'Style', 'text', 'string', 'Signif. level (<0.20)', 'tooltipstring', 'add coher. signif. level line at alpha (alpha range: (0,0.1])' } ...
{ 'Style', 'text', 'string', 'Amplitude limits (dB)' } ...
{ 'Style', 'text', 'string', 'Coher limits (<=1)' } ...
{ 'Style', 'checkbox', 'string', 'Image amps', 'tooltipstring', context('plotamps',vars,txt), 'value', fastif(strcmpi(opt.plotamps, 'on'), 1,0), 'tag', 'plotamps' } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.coher(1)), num2str(opt.coher(1:2)), ''), 'tag', 'coher', 'callback', commandcoher } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.coher(3)), num2str(opt.coher(3)), ''), 'tag', 'coher2' } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.limits(5)), num2str(opt.limits(5:6)), ''), 'tag', 'limamp' } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.limits(7)), num2str(opt.limits(7:8)), ''), 'tag', 'limcoher' } ...
{'style', 'text', 'string', ' (Requires signif.)' } ...
{} ...
{ 'Style', 'text', 'string', 'Other options', 'fontweight', 'bold'} ...
{ 'Style', 'text', 'string', 'Plot spectrum (minHz maxHz)','tooltipstring', context('spec',vars,txt)} ...
{ 'Style', 'text', 'string', 'Baseline ampl. (dB)', 'tooltipstring', 'Use it to fix baseline amplitude' } ...
{ 'Style', 'text', 'string', 'Mark times (ms)','tooltipstring', context('vert',vars,txt)} ...
{ 'Style', 'text', 'string', 'More options (see >> help erpimage)' } ...
{ 'Style', 'edit', 'string', num2str(opt.spec), 'tag', 'spec' } ...
{ 'Style', 'edit', 'string', fastif(~isnan(opt.limits(9)), num2str(opt.limits(9)), ''), 'tag', 'limbaseamp' } ...
{ 'Style', 'edit', 'string', num2str(opt.vert), 'tag', 'vert' } ...
{ 'Style', 'edit', 'string', '', 'tag', 'others' } ...
};
if typeplot == 0 % add extra param for components
geometry = { [1 1 0.1 0.8 2.1] geometry{:} };
uilist = { { } { } { } { } { } uilist{:}};
uilist{1} = uilist{6};
uilist{2} = uilist{7};
uilist{6} = { 'Style', 'text', 'string', 'Project to channel #', 'fontweight', 'bold','tooltipstring', ['Project component(s) to data channel' 10 ...
'This allows plotting projected component activity at one channel in microvolts'] };
uilist{7} = { 'Style', 'edit', 'string', getkeyval(lastcom, 4), 'tag', 'projchan' };
end
[oldres a b res] = inputgui( 'geometry', geometry, 'uilist', uilist, 'helpcom', 'pophelp(''pop_erpimage'');', ...
'title', fastif( typeplot, 'Channel ERP image -- pop_erpimage()', 'Component ERP image -- pop_erpimage()'), 'userdata', EEG);
if isempty(oldres), return; end
% first rows
% ---------
channel = eeg_decodechan(EEG.chanlocs, res.chan);
titleplot = res.title;
if isfield(res, 'projchan'),
if ~isempty(res.projchan)
if strcmpi(res.projchan(1),'''')
projchan = eval( [ '{' res.projchan '}' ]);
else projchan = parsetxt( res.projchan);
end
if ~isempty(projchan) && ~isempty(str2num(projchan{1}))
projchan = cellfun(@str2num, projchan);
end
else
projchan = [];
end
else,
projchan = [];
end
opt = [];
if ~isempty(res.others)
try,
tmpcell = eval( [ '{' res.others '}' ] );
opt = struct( tmpcell{:} );
catch, error('Additional options ("More options") requires ''key'', ''val'' arguments');
end
end
if ~typeplot && isempty(projchan)
opt.yerplabel = '';
else
opt.yerplabel = '\muV' ;
end
smooth = eval(res.smooth);
if res.plotmap
if isfield(EEG.chanlocs, 'theta')
if ~isfield(EEG, 'chaninfo'), EEG.chaninfo = []; end
if typeplot == 0
opt.topo = [ ' { mean(EEG.icawinv(:,[' int2str(channel) ']),2) EEG.chanlocs EEG.chaninfo } '];
else opt.topo = [ ' { [' int2str(channel) '] EEG.chanlocs EEG.chaninfo } '];
end;
end
end
decimate = eval( res.decimate );
if res.erp
opt.erp = 'on';
end
% finding limits
% --------------
limits(1:8) = NaN;
if ~isempty(res.limerp)
limits(3:4) = eval( [ '[' res.limerp ']' ]);
end
if ~isempty(res.limtime) % time limits
if ~strcmp(res.limtime, num2str(1000*[EEG.xmin EEG.xmax]))
limits(1:2) = eval( [ '[' res.limtime ']' ]);
end
end
if ~isempty(res.limamp)
limits(5:6) = eval( [ '[' res.limamp ']' ]);
end
if ~isempty(res.limcoher)
limits(7:8) = eval( [ '[' res.limcoher ']' ]);
end
if ~isempty(res.limbaseamp)
limits(9) = eval( res.limbaseamp ); %bamp
end
if ~all(isnan(limits))
opt.limits = limits;
end
% color limits
% --------------
if res.cbar
opt.cbar = 'on';
end
if res.caxis
opt.caxis = str2num(res.caxis);
end
% event rows
% ----------
if res.nosort
opt.nosort = 'on';
end
try, sortingeventfield = eval( res.field ); catch, sortingeventfield = res.field; end
if ~isempty(res.type)
if strcmpi(res.type(1),'''')
sortingtype = eval( [ '{' res.type '}' ] );
else sortingtype = parsetxt( res.type );
end
end
sortingwin = eval( [ '[' res.eventrange ']' ] );
if ~isempty(res.field) && ~strcmp(res.renorm, 'no')
opt.renorm = res.renorm;
end
if ~isempty(res.align)
opt.align = str2num(res.align);
end
if res.noplot
opt.noplot = 'on';
end
% phase rows
% ----------
tmpphase = [];
if ~isempty(res.phase)
tmpphase = eval( [ '[ 0 0 ' res.phase ']' ]);
end
if ~isempty(res.phase2)
tmpphase(2) = eval( res.phase2 );
end
if ~isempty(res.phase3)
tmpphase(1) = eval( res.phase3 );
end
if ~isempty(tmpphase)
opt.phasesort = tmpphase;
end
% coher row
% ----------
tmpcoher = [];
if res.plotamps
opt.plotamps = 'on';
end
if ~isempty(res.coher)
tmpcoher = eval( [ '[' res.coher ']' ]);
end
if ~isempty(res.coher2)
if length(tmpcoher) == 1
tmpcoher(2) = tmpcoher(1);
end
tmpcoher(3) = eval( res.coher2 );
end
if ~isempty(tmpcoher)
opt.coher = tmpcoher;
end
% options row
% ------------
if ~isempty(res.spec)
opt.spec = eval( [ '[' res.spec ']' ]);
end
if ~isempty(res.vert)
opt.vert = eval( [ '[' res.vert ']' ]);
end
figure;
options = '';
else
options = '';
if nargin < 4
projchan = [];
end
if nargin < 5
titleplot = '';
end
if nargin < 6
smooth = 5;
end
if nargin < 7
decimate = 0;
end
if nargin < 8
sortingtype = [];
end
if nargin < 9
sortingwin = [];
end
if nargin < 10
sortingeventfield = [];
end
%options = vararg2str(varargin); % NO BECAUSE OF THE CHANNEL LOCATION
% PROBLEM BELOW
for i=1:length( varargin )
if ischar( varargin{ i } )
options = [ options ', ''' varargin{i} '''' ];
else
if ~iscell( varargin{ i } )
options = [ options ',' vararg2str({varargin{i}}) ];
else
%options = [ options ', { [' num2str(varargin{ i }{1}') ']'' EEG.chanlocs EEG.chaninfo }' ]; % JRI -- why does this ignore value passed as topo option?
if length(varargin{i})>1
optchanlocs = varargin{i}{2}; % JRI -- fix
else
optchanlocs = EEG.chanlocs;
end;
if length(varargin{i})>2,
optchaninfo = varargin{i}{3};
else
optchaninfo = EEG.chaninfo;
end
options = [ options ', { [' num2str(varargin{ i }{1}') ']'' optchanlocs optchaninfo }' ];
end;
end
end;
end
try, icadefs; set(gcf, 'color', BACKCOLOR,'Name',' erpimage()'); catch, end
% testing inputs
% --------------
if ischar(channel)
channel = eeg_decodechan(EEG.chanlocs, channel);
end
if typeplot == 0 && length(channel) > 1 && isempty(projchan)
error('A channel must be selected to plot (the sum of) several component projections');
end
% find sorting latencies
% ---------------------
typetxt = '';
if ~isempty(sortingeventfield)
%events = eeg_getepochevent( EEG, sortingtype, sortingwin, sortingeventfield);
events = sprintf('eeg_getepochevent( EEG, %s)', vararg2str({sortingtype, sortingwin, sortingeventfield}));
% generate text for the command
% -----------------------------
for index = 1:length(sortingtype)
if ischar(sortingtype{index})
typetxt = [typetxt ' ''' sortingtype{index} '''' ];
else
typetxt = [typetxt ' ' num2str(sortingtype{index}) ];
end
end;
% $$$ % renormalize latencies if necessary
% $$$ % ----------------------------------
% $$$ switch lower(renorm)
% $$$ case 'yes',
% $$$ disp('Pop_erpimage warning: *** sorting variable renormalized ***');
% $$$ events = (events-min(events)) / (max(events) - min(events)) * ...
% $$$ 0.5 * (EEG.xmax*1000 - EEG.xmin*1000) + EEG.xmin*1000 + 0.4*(EEG.xmax*1000 - EEG.xmin*1000);
% $$$ case 'no',;
% $$$ otherwise,
% $$$ locx = findstr('x', lower(renorm))
% $$$ if length(locx) ~= 1, error('Pop_erpimage error: unrecognize renormalazing formula'); end
% $$$ eval( [ 'events =' renorm(1:locx-1) 'events' renorm(locx+1:end) ';'] );
% $$$ end
else
events = 'ones(1, EEG.trials)*EEG.xmax*1000';
%events = ones(1, EEG.trials)*EEG.xmax*1000;
sortingeventfield = '';
end;
if ischar(projchan)
projchan = { projchan };
end
if iscell(projchan)
projchannum = std_chaninds(EEG, projchan);
else
projchannum = projchan;
end
if typeplot == 1
tmpsig = ['mean(EEG.data([' int2str(channel) '], :),1)'];
else
% test if ICA was computed or if one has to compute on line
% ---------------------------------------------------------
tmpsig = [ 'eeg_getdatact(EEG, ''component'', [' int2str(channel) '], ''projchan'', [' int2str(projchannum) '])' ];
end
% outputs
% -------
outstr = '';
if ~popup
for io = 1:nargout, outstr = [outstr 'varargout{' int2str(io) '},' ]; end
if ~isempty(outstr), outstr = [ '[' outstr(1:end-1) '] =' ]; end
end
% plot title
% ----------
if isempty(titleplot)
if typeplot==1 % if channel plot
if ~isempty(EEG.chanlocs) % if channel information exist
titleplot = [ EEG.chanlocs(channel).labels ];
else, titleplot = [ int2str(channel) ];
end
else
titleplot = [ 'Comp. ' int2str(channel) ];
if ~isempty(projchan),
tmpstr = vararg2str({projchan});
tmpstr(find(tmpstr == '''')) = '"';
titleplot = [ titleplot ' -> Chan. ' tmpstr ];
end
end
end
% plot the data and generate output command
% --------------------------------------------
if isempty( options )
if isfield(opt, 'topo')
tmptopo = opt.topo;
opt = rmfield(opt, 'topo');
else
tmptopo = '';
end
if ~isempty(opt)
fields = fieldnames(opt);
values = struct2cell(opt);
params = { fields{:}; values{:} };
options = [ ',' vararg2str( { params{:} } ) ];
tmpind = find( options == '\' ); options(tmpind(1:2:end)) = [];
if ~isempty(tmptopo), options = [ options ',''topo'',' tmptopo ]; end
end
end
% varargout{1} = sprintf('figure; pop_erpimage(%s,%d,%d,''%s'',%d,%d,{%s},[%s],''%s'',''%s''%s);', inputname(1), typeplot, channel, titleplot, smooth, decimate, typetxt, int2str(sortingwin), sortingeventfield, renorm, options);
popcom = sprintf('figure; pop_erpimage(EEG,%d, [%s],[%s],''%s'',%d,%d,{%s},[%s],''%s'' %s);', typeplot, int2str(channel), vararg2str({projchan}), titleplot, smooth, decimate, typetxt, int2str(sortingwin), sortingeventfield, options);
com = sprintf('%s erpimage( %s, %s, linspace(EEG.xmin*1000, EEG.xmax*1000, EEG.pnts), ''%s'', %d, %d %s);', outstr, tmpsig, events, titleplot, smooth, decimate, options);
disp('Command executed by pop_erpimage:');
disp(' '); disp(com); disp(' ');
eval(com)
if popup
varargout{1} = popcom; % [10 '% Call: ' com];
end
return;
% get contextual help
% -------------------
function txt = context(var, allvars, alltext);
loc = strmatch( var, allvars);
if ~isempty(loc)
txt= alltext{loc(1)};
else
disp([ 'warning: variable ''' var ''' not found']);
txt = '';
end
Datasets
Models
