% GETIPSPH - Compute "in place" (m by n) sphering or quasi-sphering matrix for an (n by t)
% input data matrix. Quasi-sphering reduces dimensionality of the data, while
% maintaining approximately the "original" positions of the axes. That is,
% quasi-sphering "rotates back" as much as possible into the original channel
% axes, versus simple PCA reduction to the principal subspace (i.e., projecting
% the data onto a largest eigenvector basis).
% Usage:
% >> S = getipsph(x,m)
%
% Input:
% x size [n,t] input n-channel data matrix
%
% Optional input:
% m (int <= n) Reduce output dimensions to [n,m]. If m is not present, or m==n,
% then the usual sphering matrix (the symmetric square root of the data
% covariance matrix) is returned. {default: [], return usual sphering matrix).
% Output:
%
% S size [m,n] (if m==n) sphering matrix, or (if m < n) quasi-sphering matrix
% Example:
% >> x = nrand(10,1000); % random (10,1000) matrix
% >> S = getipsph(x,8); % return quasi-sphering matrix reducing dimension to 8
% >> d = S*x; % d is the quasi-sphered 8-dimensional data
% %
% % If ICA decomposition is performed on d, as >> [w] = runica(d,'sphering','off');
% % then the mixing matrix containing the 8 component maps in original channel
% % coordinates is >> A = pinv(W*S); % where A is size [n,m]
%
% Author: Jason Palmer, SCCN / INC / UCSD, 2008
% Copyright (C) Jason Palmer, SCCN / INC / UCSD , La Jolla 2008
%
% This file is part of EEGLAB, see http://www.eeglab.org
% for the documentation and details.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions are met:
%
% 1. Redistributions of source code must retain the above copyright notice,
% this list of conditions and the following disclaimer.
%
% 2. Redistributions in binary form must reproduce the above copyright notice,
% this list of conditions and the following disclaimer in the documentation
% and/or other materials provided with the distribution.
%
% THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
% AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
% IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
% ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
% LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
% CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
% SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
% CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
% ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
% THE POSSIBILITY OF SUCH DAMAGE.
function S = getipsph(x,m)
[n,N] = size(x);
if nargin < 2
m = n;
end
if m>n
help getipsph
return
end
mn = mean(x,2);
for i = 1:n
x(i,:) = x(i,:) - mn(i);
end
Sxx = x*x'/N; Sxx = (Sxx+Sxx')/2;
[U,D,V] = svd(Sxx);
ds = diag(D);
if m == n
S = U * pinv(diag(sqrt(ds))) * U';
elseif m < n
[sd,so] = sort(diag(Sxx),1,'descend');
[uv,sv,vv] = svd(U(so(1:m),1:m));
S = uv * vv' * pinv(diag(sqrt(ds(1:m)))) * U(:,1:m)';
else
error('m must be less than or equal to n');
end