--- a +++ b/functions/adminfunc/eeg_helpstudy.m @@ -0,0 +1,129 @@ +%EEGLAB group processing (STUDY) functions (studyfunc folder): +% <a href="matlab:helpwin compute_ersp_times">compute_ersp_times</a> - Computes the widest possible ERSP/ITC time window,... +% <a href="matlab:helpwin eeglabciplot">eeglabciplot</a> - Eeglabciplot(lower,upper)... +% <a href="matlab:helpwin extractcontrast">extractcontrast</a> - AllFactorsStruct = pop_listfactors(STUDY.design)... +% <a href="matlab:helpwin gethashcode">gethashcode</a> - Get hash code for input array... +% <a href="matlab:helpwin neural_net">neural_net</a> - Computes clusters using Matlab Neural Net toolbox. +% <a href="matlab:helpwin pop_addindepvar">pop_addindepvar</a> - Support function for pop_studydesign... +% <a href="matlab:helpwin pop_chanplot">pop_chanplot</a> - Graphic user interface (GUI)-based function with plotting... +% <a href="matlab:helpwin pop_clust">pop_clust</a> - Select and run a clustering algorithm on components from an EEGLAB STUDY... +% <a href="matlab:helpwin pop_clustedit">pop_clustedit</a> - Graphic user interface (GUI)-based function with editing and plotting... +% <a href="matlab:helpwin pop_dipparams">pop_dipparams</a> - Set plotting parameters for dipoles. +% <a href="matlab:helpwin pop_erpimparams">pop_erpimparams</a> - Set plotting and statistics parameters for... +% <a href="matlab:helpwin pop_erpparams">pop_erpparams</a> - Set plotting and statistics parameters for cluster ERP... +% <a href="matlab:helpwin pop_erspparams">pop_erspparams</a> - Set plotting and statistics parameters for... +% <a href="matlab:helpwin pop_importgroupvar">pop_importgroupvar</a> - Import a group variable from a ASCII file and... +% <a href="matlab:helpwin pop_limo">pop_limo</a> - Prepare and convert EEGLAB data and structure to be... +% <a href="matlab:helpwin pop_limoresults">pop_limoresults</a> - Deprecated... +% <a href="matlab:helpwin pop_listfactors">pop_listfactors</a> - List independent variables factors for a given design... +% <a href="matlab:helpwin pop_loadstudy">pop_loadstudy</a> - Load an existing EEGLAB STUDY set of EEG datasets plus... +% <a href="matlab:helpwin pop_preclust">pop_preclust</a> - Prepare STUDY components' location and activity measures for later clustering. +% <a href="matlab:helpwin pop_precomp">pop_precomp</a> - Precompute measures (spectrum, ERP, ERSP) for a collection of data... +% <a href="matlab:helpwin pop_savestudy">pop_savestudy</a> - Save a STUDY structure to a disk file... +% <a href="matlab:helpwin pop_specparams">pop_specparams</a> - Set plotting and statistics parameters for computing... +% <a href="matlab:helpwin pop_statparams">pop_statparams</a> - Helper function for pop_erspparams, pop_erpparams, and... +% <a href="matlab:helpwin pop_study">pop_study</a> - Create a new STUDY set structure defining a group of related EEG datasets. +% <a href="matlab:helpwin pop_studydesign">pop_studydesign</a> - Create a STUDY design structure. +% <a href="matlab:helpwin pop_studyerp">pop_studyerp</a> - Create a simple design for ERP analysis... +% <a href="matlab:helpwin robust_kmeans">robust_kmeans</a> - An extension of Matlab KMEANS that removes outlier... +% <a href="matlab:helpwin std_apcluster">std_apcluster</a> - Affinity propagation cluster for eeglab STUDY... +% <a href="matlab:helpwin std_builddesignmat">std_builddesignmat</a> - Build the design matrix for an specific design... +% <a href="matlab:helpwin std_cell2setcomps">std_cell2setcomps</a> - Convert .sets and .comps to cell array. The .sets and... +% <a href="matlab:helpwin std_centroid">std_centroid</a> - Compute cluster centroid in EEGLAB dataset STUDY. +% <a href="matlab:helpwin std_changroup">std_changroup</a> - Create channel groups for plotting. +% <a href="matlab:helpwin std_chaninds">std_chaninds</a> - Look up channel indices in a STUDY... +% <a href="matlab:helpwin std_chantopo">std_chantopo</a> - Plot ERP/spectral/ERSP topoplot at a specific... +% <a href="matlab:helpwin std_checkconsist">std_checkconsist</a> - Create channel groups for plotting. +% <a href="matlab:helpwin std_checkdatasession">std_checkdatasession</a> - Check/fill session field in STUDY. Based in the... +% <a href="matlab:helpwin std_checkdesign">std_checkdesign</a> - Check if STUDY design is compatible with EEGLAB... +% <a href="matlab:helpwin std_checkfiles">std_checkfiles</a> - Check all STUDY files consistency... +% <a href="matlab:helpwin std_checkset">std_checkset</a> - Check STUDY set consistency... +% <a href="matlab:helpwin std_clustmaxelec">std_clustmaxelec</a> - Function to find the electrode with maximum absolute projection... +% <a href="matlab:helpwin std_combtrialinfo">std_combtrialinfo</a> - Combine and integrate all the info into the... +% <a href="matlab:helpwin std_comppol">std_comppol</a> - Inverse component polarity in a component cluster... +% <a href="matlab:helpwin std_createclust">std_createclust</a> - Dreate a new empty cluster. After creation, components... +% <a href="matlab:helpwin std_detachplots">std_detachplots</a> - Given a figure with subplots and several lines per axis, will add a callback to... +% <a href="matlab:helpwin std_dipoleclusters">std_dipoleclusters</a> - Plots clusters of ICs as colored dipoles in MRI... +% <a href="matlab:helpwin std_dipplot">std_dipplot</a> - Commandline function to plot cluster component dipoles. Dipoles for each... +% <a href="matlab:helpwin std_editset">std_editset</a> - Modify a STUDY set structure. +% <a href="matlab:helpwin std_erp">std_erp</a> - Constructs and returns channel or ICA activation ERPs for a dataset. +% <a href="matlab:helpwin std_erpimage">std_erpimage</a> - Compute ERP images and save them on disk. +% <a href="matlab:helpwin std_erpimageplot">std_erpimageplot</a> - Commandline function to plot cluster ERPimage or channel erpimage. +% <a href="matlab:helpwin std_erpplot">std_erpplot</a> - Command line function to plot STUDY cluster component ERPs. Either... +% <a href="matlab:helpwin std_ersp">std_ersp</a> - Compute ERSP and/or ITC transforms for ICA components... +% <a href="matlab:helpwin std_erspplot">std_erspplot</a> - Plot STUDY cluster ERSPs. Displays either mean cluster ERSPs,... +% <a href="matlab:helpwin std_figtitle">std_figtitle</a> - Generate plotting figure titles in a cell array... +% <a href="matlab:helpwin std_filecheck">std_filecheck</a> - Check if ERSP or SPEC file contain specific parameters. +% <a href="matlab:helpwin std_fileinfo">std_fileinfo</a> - Check uniform channel distribution across datasets... +% <a href="matlab:helpwin std_findgroupvars">std_findgroupvars</a> - Find group vars in STUY structure... +% <a href="matlab:helpwin std_findoutlierclust">std_findoutlierclust</a> - Determine whether an outlier cluster already exists... +% <a href="matlab:helpwin std_findsameica">std_findsameica</a> - Find groups of datasets with identical ICA decomposiotions... +% <a href="matlab:helpwin std_getdataset">std_getdataset</a> - Constructs and returns EEG dataset from STUDY design. +% <a href="matlab:helpwin std_getindvar">std_getindvar</a> - Get independent variables of a STUDY... +% <a href="matlab:helpwin std_gettrialsind">std_gettrialsind</a> - Return the index of the trials that comply with the... +% <a href="matlab:helpwin std_indvarmatch">std_indvarmatch</a> - Match independent variable value in a list of values... +% <a href="matlab:helpwin std_interp">std_interp</a> - Interpolate, if needed, a list of named data channels... +% <a href="matlab:helpwin std_itcplot">std_itcplot</a> - Commandline function to plot cluster ITCs. Either displays mean cluster... +% <a href="matlab:helpwin std_limo">std_limo</a> - Export and run in LIMO the EEGLAB STUDY design. +% <a href="matlab:helpwin std_limo_old">std_limo_old</a> - Export and run in LIMO the EEGLAB STUDY design. +% <a href="matlab:helpwin std_limocontrast">std_limocontrast</a> - No help information +% <a href="matlab:helpwin std_limodesign">std_limodesign</a> - Create LIMO design matrices for categorical and... +% <a href="matlab:helpwin std_limoerase">std_limoerase</a> - Erase LIMO files. +% <a href="matlab:helpwin std_limoresults">std_limoresults</a> - Studyset structure containing some or all files in ALLEEG... +% <a href="matlab:helpwin std_limosavedesignfiles">std_limosavedesignfiles</a> - Factors = pop_listfactors(STUDY.design(2), 'gui', 'off');... +% <a href="matlab:helpwin std_lm_getvars">std_lm_getvars</a> - Retrieve categorical or continuous variables from a... +% <a href="matlab:helpwin std_lm_seteegfields">std_lm_seteegfields</a> - Set limo fields in eeg sets... +% <a href="matlab:helpwin std_loadalleeg">std_loadalleeg</a> - Constructs an ALLEEG structure, given the paths and file names... +% <a href="matlab:helpwin std_makedesign">std_makedesign</a> - Create a new or edit an existing STUDY.design by... +% <a href="matlab:helpwin std_maketrialinfo">std_maketrialinfo</a> - Create trial information structure using the... +% <a href="matlab:helpwin std_mergeclust">std_mergeclust</a> - Commandline function, to merge several clusters. +% <a href="matlab:helpwin std_movecomp">std_movecomp</a> - Move ICA component(s) from one cluster to another. +% <a href="matlab:helpwin std_moveoutlier">std_moveoutlier</a> - Commandline function, to reassign specified outlier component(s)... +% <a href="matlab:helpwin std_movie">std_movie</a> - Make movie in the frequency domain... +% <a href="matlab:helpwin std_pac">std_pac</a> - Compute or read PAC data (Phase Amplitude Coupling). +% <a href="matlab:helpwin std_pacplot">std_pacplot</a> - Commandline function to plot cluster PAC... +% <a href="matlab:helpwin std_plot">std_plot</a> - This function is outdated. Use STD_PLOTTF to plot time/... +% <a href="matlab:helpwin std_plotcurve">std_plotcurve</a> - Plot ERP or spectral traces for a STUDY component... +% <a href="matlab:helpwin std_plotdmat">std_plotdmat</a> - Plot design matrix and info associated with the study for... +% <a href="matlab:helpwin std_plottf">std_plottf</a> - Plot ERSP/ITC images a component... +% <a href="matlab:helpwin std_preclust">std_preclust</a> - Select measures to be included in computation of a preclustering array. +% <a href="matlab:helpwin std_precomp">std_precomp</a> - Precompute measures (ERP, spectrum, ERSP, ITC) for channels or... +% <a href="matlab:helpwin std_precomp_worker">std_precomp_worker</a> - Allow dispatching ERSP to be computed in parallel... +% <a href="matlab:helpwin std_prepare_neighbors">std_prepare_neighbors</a> - Prepare Fieldtrip channel neighbor structure. +% <a href="matlab:helpwin std_propplot">std_propplot</a> - Command line function to plot component cluster... +% <a href="matlab:helpwin std_pvaf">std_pvaf</a> - Compute 'percent variance accounted for' (pvaf) by specified... +% <a href="matlab:helpwin std_readcustom">std_readcustom</a> - Read custom data structure for file save on disk. +% <a href="matlab:helpwin std_readdata">std_readdata</a> - Load measures for data channels or... +% <a href="matlab:helpwin std_readerp">std_readerp</a> - Load ERP measures for data channels or... +% <a href="matlab:helpwin std_readerpimage">std_readerpimage</a> - Load ERPimage measures for data channels or... +% <a href="matlab:helpwin std_readersp">std_readersp</a> - Load ERSP measures for data channels or for all... +% <a href="matlab:helpwin std_readfile">std_readfile</a> - Read data file containing STUDY measures. +% <a href="matlab:helpwin std_readfilelimo">std_readfilelimo</a> - Read limo file into eeglab structure... +% <a href="matlab:helpwin std_readitc">std_readitc</a> - Load ITC measures for data channels or... +% <a href="matlab:helpwin std_readpac">std_readpac</a> - Read phase-amplitude correlation... +% <a href="matlab:helpwin std_readspec">std_readspec</a> - Load spectrum measures for data channels or... +% <a href="matlab:helpwin std_readspecgram">std_readspecgram</a> - Returns the stored mean power spectrogram for an ICA component... +% <a href="matlab:helpwin std_readtopo">std_readtopo</a> - Returns the scalp map of a specified ICA component, assumed... +% <a href="matlab:helpwin std_readtopoclust">std_readtopoclust</a> - Compute and return cluster component scalp maps. +% <a href="matlab:helpwin std_rebuilddesign">std_rebuilddesign</a> - Reduild design structure when datasets have been... +% <a href="matlab:helpwin std_rejectoutliers">std_rejectoutliers</a> - Commandline function, to reject outlier component(s) from clusters. +% <a href="matlab:helpwin std_renameclust">std_renameclust</a> - Commandline function, to rename clusters using specified (mnemonic) names. +% <a href="matlab:helpwin std_renamestudyfiles">std_renamestudyfiles</a> - Rename files for design 1 if necessary. In design... +% <a href="matlab:helpwin std_reset">std_reset</a> - Remove all preloaded measures from STUDY... +% <a href="matlab:helpwin std_rmalldatafields">std_rmalldatafields</a> - Remove all data fields from STUDY (before saving... +% <a href="matlab:helpwin std_savedat">std_savedat</a> - Save measure for computed data... +% <a href="matlab:helpwin std_selcomp">std_selcomp</a> - Helper function for STD_ERPPLOT, STD_SPECPLOT... +% <a href="matlab:helpwin std_selectdataset">std_selectdataset</a> - Select datasets and trials for a given independent... +% <a href="matlab:helpwin std_selectdesign">std_selectdesign</a> - Select an existing STUDY design. +% <a href="matlab:helpwin std_selsubject">std_selsubject</a> - Helper function for STD_ERPPLOT, STD_SPECPLOT... +% <a href="matlab:helpwin std_serialize">std_serialize</a> - Convert a MATLAB data structure into a compact byte vector. This function... +% <a href="matlab:helpwin std_spec">std_spec</a> - Returns the ICA component spectra for a dataset. Updates the EEG structure... +% <a href="matlab:helpwin std_specgram">std_specgram</a> - Returns the ICA component or channel spectrogram for a dataset. +% <a href="matlab:helpwin std_specplot">std_specplot</a> - Plot STUDY component cluster spectra, either mean spectra... +% <a href="matlab:helpwin std_stat">std_stat</a> - Compute statistics for ERP/spectral traces or ERSP/ITC images... +% <a href="matlab:helpwin std_substudy">std_substudy</a> - Create a sub-STUDY set by removing datasets, conditions, groups, or... +% <a href="matlab:helpwin std_topo">std_topo</a> - Uses TOPOPLOT to get the interpolated Cartesian grid of the... +% <a href="matlab:helpwin std_topoplot">std_topoplot</a> - Command line function to plot cluster component and mean scalp maps. +% <a href="matlab:helpwin std_uniformfiles">std_uniformfiles</a> - Check uniform channel distribution across data files... +% <a href="matlab:helpwin std_uniformsetinds">std_uniformsetinds</a> - Check uniform channel distribution across datasets... +% <a href="matlab:helpwin toporeplot">toporeplot</a> - Re-plot a saved TOPOPLOT output image (a square matrix)...