--- a +++ b/docs/links.inc @@ -0,0 +1,201 @@ +.. This (-*- rst -*-) format file contains commonly used link targets + and name substitutions. It may be included in many files, + therefore it should only contain link targets and name + substitutions. Try grepping for "^\.\. _" to find plausible + candidates for this list. + +.. NOTE: reST targets are + __not_case_sensitive__, so only one target definition is needed for + nipy, NIPY, Nipy, etc... + + +.. mne + +.. _`MNE-Python`: http://mne.tools/mne-python-intro +.. _`MNE-Python GitHub`: https://github.com/mne-tools/mne-python +.. _`mne-scripts`: https://github.com/mne-tools/mne-scripts/ +.. _`MNE-C manual`: https://mne.tools/mne-c-manual/MNE-manual-2.7.3.pdf +.. _`GitHub issues page`: https://github.com/mne-tools/mne-python/issues/ +.. _`MNE Forum`: https://mne.discourse.group +.. _`MNE-BIDS`: https://mne.tools/mne-bids +.. _`MNE-BIDS-Pipeline`: https://mne.tools/mne-bids-pipeline +.. _`MNE-HCP`: http://mne.tools/mne-hcp +.. _`MNE-Realtime`: https://mne.tools/mne-realtime +.. _`MNE-MATLAB git repository`: https://github.com/mne-tools/mne-matlab +.. _`MNE-Docker`: https://github.com/mne-tools/mne-docker +.. _EOSS2: https://chanzuckerberg.com/eoss/proposals/improving-usability-of-core-neuroscience-analysis-tools-with-mne-python +.. _EOSS4: https://chanzuckerberg.com/eoss/proposals/building-pediatric-and-clinical-data-pipelines-for-mne-python/ +.. _`code of conduct`: https://github.com/mne-tools/.github/blob/main/CODE_OF_CONDUCT.md + + +.. TUTORIAL LINKS + +.. _errors: https://en.wikipedia.org/w/index.php?title=Type_I_and_type_II_errors#Table_of_error_types +.. _fwer: https://en.wikipedia.org/wiki/Family-wise_error_rate +.. _fdr: https://en.wikipedia.org/wiki/False_discovery_rate +.. _ft_cluster: http://www.fieldtriptoolbox.org/faq/how_not_to_interpret_results_from_a_cluster-based_permutation_test +.. _ft_cluster_effect_size: https://mailman.science.ru.nl/pipermail/fieldtrip/2017-September/024644.html +.. _ft_exch: https://mailman.science.ru.nl/pipermail/fieldtrip/2008-October/001794.html + + + +.. TEMPLATE FOR LINKS TO OTHER PROJECTS +.. _PROJECTNAME: http://neuroimaging.scipy.org +.. _`PROJECTNAME github`: http://github.com/nipy +.. _`PROJECTNAME mailing list`: http://projects.scipy.org/mailman/listinfo/nipy-devel + +.. numpy + +.. _numpy: http://www.numpy.org +.. _`numpy github`: http://github.com/numpy/numpy +.. _`numpy mailing list`: http://mail.scipy.org/mailman/listinfo/numpy-discussion + + +.. scipy + +.. _scipy: http://www.scipy.org +.. _`scipy github`: http://github.com/scipy/scipy +.. _`scipy mailing list`: http://mail.scipy.org/mailman/listinfo/scipy-dev + +.. freesurfer + +.. _freesurfer: https://surfer.nmr.mgh.harvard.edu/ +.. _`freesufer github`: https://github.com/freesurfer/freesurfer +.. _`freesurfer mailing list`: https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSupport + + +.. nipy + +.. _nipy: http://nipy.org/nipy +.. _`nipy github`: http://github.com/nipy/nipy +.. _`nipy mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel + + +.. ipython + +.. _ipython: https://ipython.org +.. _`ipython github`: https://github.com/ipython/ipython +.. _`ipython mailing list`: https://mail.python.org/mailman/listinfo/ipython-dev + + +.. dipy + +.. _dipy: http://nipy.org/dipy +.. _`dipy github`: http://github.com/Garyfallidis/dipy +.. _`dipy mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel + + +.. nibabel + +.. _nibabel: http://nipy.org/nibabel +.. _`nibabel github`: http://github.com/nipy/nibabel +.. _`nibabel mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel + + +.. h5py + +.. _h5py: http://www.h5py.org +.. _`h5py github`: http://github.com/h5py/h5py +.. _`h5py mailing list`: https://groups.google.com/forum/#!forum/h5py + + +.. Pytest + +.. _pytest: https://docs.pytest.org/ + + +.. Flake8 + +.. _Flake8: http://flake8.pycqa.org/ + + +.. pymatreader + +.. _pymatreader: https://gitlab.com/obob/pymatreader + + +.. h5io + +.. _h5io: https://github.com/h5io/h5io + + +.. CuPy + +.. _CuPy: https://cupy.chainer.org/ + +.. Dask + +.. _Dask: https://dask.org/ + +.. git stuff + +.. _git: https://git-scm.com/ +.. _github: https://github.com +.. _GitHub Help: https://help.github.com +.. _GitHub learning lab: https://lab.github.com/ +.. _pro git book: https://git-scm.com/book/ +.. _git bash: https://gitforwindows.org/ +.. _git for Windows: https://gitforwindows.org/ +.. _git clone: http://schacon.github.com/git/git-clone.html +.. _git checkout: https://schacon.github.io/git/git-checkout.html +.. _git commit: https://schacon.github.io/git/git-commit.html +.. _git push: https://schacon.github.io/git/git-push.html +.. _git pull: https://schacon.github.io/git/git-pull.html +.. _git add: https://schacon.github.io/git/git-add.html +.. _git status: https://schacon.github.io/git/git-status.html +.. _git diff: https://schacon.github.io/git/git-diff.html +.. _git log: https://schacon.github.io/git/git-log.html +.. _git branch: https://schacon.github.io/git/git-branch.html +.. _git remote: https://schacon.github.io/git/git-remote.html +.. _git rebase: https://schacon.github.io/git/git-rebase.html +.. _git config: https://schacon.github.io/git/git-config.html + +.. other stuff + +.. _python: http://www.python.org +.. _Brain Imaging Data Structure: https://bids.neuroimaging.io/ + +.. python packages + +.. _pep8: https://pypi.org/project/pep8/ +.. _pyflakes: https://pypi.org/project/pyflakes +.. _coverage: https://pypi.python.org/pypi/coverage +.. _mayavi: https://docs.enthought.com/mayavi/mayavi/ +.. _nitime: http://nipy.org/nitime/ +.. _joblib: https://pypi.python.org/pypi/joblib +.. _scikit-learn: https://scikit-learn.org/stable/ +.. _pyDICOM: https://pypi.python.org/pypi/pydicom/ +.. _matplotlib: https://matplotlib.org/ +.. _sphinx: https://www.sphinx-doc.org/ +.. _pandas: https://pandas.pydata.org/ +.. _PIL: https://pypi.python.org/pypi/PIL +.. _tqdm: https://tqdm.github.io/ +.. _pooch: https://www.fatiando.org/pooch/latest/ + +.. python editors + +.. _Spyder: https://www.spyder-ide.org/ +.. _`integrated development environment`: https://en.wikipedia.org/wiki/Integrated_development_environment +.. _`spyder`: https://www.spyder-ide.org/ +.. _`visual studio code`: https://code.visualstudio.com/ +.. _`pycharm`: https://www.jetbrains.com/pycharm/ + +.. _anaconda: https://www.anaconda.com/products/individual +.. _miniconda: https://conda.io/en/latest/miniconda.html +.. _miniforge: https://github.com/conda-forge/miniforge +.. _installation instructions for Anaconda: http://docs.continuum.io/anaconda/install +.. _installation instructions for Miniconda: https://conda.io/projects/conda/en/latest/user-guide/install/index.html +.. _Anaconda troubleshooting guide: http://conda.pydata.org/docs/troubleshooting.html + +.. installation links + +.. _requirements file: https://raw.githubusercontent.com/mne-tools/mne-python/main/requirements.txt +.. _NVIDIA CUDA GPU processing: https://developer.nvidia.com/cuda-zone +.. _NVIDIA proprietary drivers: https://www.geforce.com/drivers + +.. _Sphinx documentation: https://www.sphinx-doc.org/en/master/usage/restructuredtext/basics.html +.. _sphinx-gallery: https://sphinx-gallery.github.io +.. _NumPy docstring style guidelines: https://numpydoc.readthedocs.io/en/latest/format.html#docstring-standard +.. _Stack Overflow: https://stackoverflow.com/ + +.. vim: ft=rst