|
a |
|
b/python/run_train_SVM.py |
|
|
1 |
#!/usr/bin/env python |
|
|
2 |
|
|
|
3 |
""" |
|
|
4 |
run_SVM.py |
|
|
5 |
|
|
|
6 |
VARPA, University of Coruna |
|
|
7 |
Mondejar Guerra, Victor M. |
|
|
8 |
27 Oct 2017 |
|
|
9 |
""" |
|
|
10 |
|
|
|
11 |
from train_SVM import * |
|
|
12 |
|
|
|
13 |
# Call different configurations for train_SVM.py |
|
|
14 |
|
|
|
15 |
#################################################################################### |
|
|
16 |
winL = 90 |
|
|
17 |
winR = 90 |
|
|
18 |
do_preprocess = True |
|
|
19 |
use_weight_class = True |
|
|
20 |
maxRR = True |
|
|
21 |
compute_morph = {''} # 'wvlt', 'HOS', 'myMorph' |
|
|
22 |
|
|
|
23 |
multi_mode = 'ovo' |
|
|
24 |
voting_strategy = 'ovo_voting' # 'ovo_voting_exp', 'ovo_voting_both' |
|
|
25 |
|
|
|
26 |
use_RR = False |
|
|
27 |
norm_RR = False |
|
|
28 |
|
|
|
29 |
oversamp_method = '' |
|
|
30 |
feature_selection = '' |
|
|
31 |
do_cross_val = '' |
|
|
32 |
C_value = 0.001 |
|
|
33 |
reduced_DS = False # To select only patients in common with MLII and V1 |
|
|
34 |
leads_flag = [1,0] # MLII, V1 |
|
|
35 |
|
|
|
36 |
pca_k = 0 |
|
|
37 |
|
|
|
38 |
################ |
|
|
39 |
|
|
|
40 |
# With feature selection |
|
|
41 |
ov_methods = {''}#, 'SMOTE_regular'} |
|
|
42 |
|
|
|
43 |
C_values = {0.001, 0.01, 0.1, 1, 10, 100} |
|
|
44 |
gamma_values = {0.0} |
|
|
45 |
gamma_value = 0.0 |
|
|
46 |
|
|
|
47 |
for C_value in C_values: |
|
|
48 |
pca_k = 0 |
|
|
49 |
|
|
|
50 |
# Single |
|
|
51 |
use_RR = False |
|
|
52 |
norm_RR = False |
|
|
53 |
compute_morph = {'u-lbp'} |
|
|
54 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
55 |
|
|
|
56 |
""" |
|
|
57 |
# Two |
|
|
58 |
use_RR = True |
|
|
59 |
norm_RR = True |
|
|
60 |
compute_morph = {'u-lbp'} |
|
|
61 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
62 |
use_RR = False |
|
|
63 |
norm_RR = False |
|
|
64 |
|
|
|
65 |
compute_morph = {'wvlt', 'u-lbp'} |
|
|
66 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
67 |
|
|
|
68 |
compute_morph = {'HOS', 'u-lbp'} |
|
|
69 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
70 |
|
|
|
71 |
compute_morph = {'myMorph', 'u-lbp'} |
|
|
72 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
73 |
|
|
|
74 |
|
|
|
75 |
|
|
|
76 |
# Three |
|
|
77 |
use_RR = True |
|
|
78 |
norm_RR = True |
|
|
79 |
compute_morph = {'wvlt', 'u-lbp'} |
|
|
80 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
81 |
|
|
|
82 |
compute_morph = {'HOS', 'u-lbp'} |
|
|
83 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
84 |
|
|
|
85 |
compute_morph = {'myMorph', 'u-lbp'} |
|
|
86 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
87 |
|
|
|
88 |
use_RR = False |
|
|
89 |
norm_RR = False |
|
|
90 |
compute_morph = {'wvlt','HOS', 'u-lbp'} |
|
|
91 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
92 |
|
|
|
93 |
compute_morph = {'wvlt','myMorph', 'u-lbp'} |
|
|
94 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
95 |
|
|
|
96 |
|
|
|
97 |
compute_morph = {'HOS','myMorph', 'u-lbp'} |
|
|
98 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
99 |
|
|
|
100 |
|
|
|
101 |
|
|
|
102 |
# four |
|
|
103 |
use_RR = True |
|
|
104 |
norm_RR = True |
|
|
105 |
compute_morph = {'wvlt', 'HOS', 'u-lbp'} |
|
|
106 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
107 |
|
|
|
108 |
compute_morph = {'wvlt', 'myMorph', 'u-lbp'} |
|
|
109 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
110 |
|
|
|
111 |
|
|
|
112 |
compute_morph = {'HOS','myMorph', 'u-lbp'} |
|
|
113 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
114 |
|
|
|
115 |
use_RR = False |
|
|
116 |
norm_RR = False |
|
|
117 |
compute_morph = {'wvlt', 'HOS','myMorph', 'u-lbp'} |
|
|
118 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
119 |
|
|
|
120 |
|
|
|
121 |
|
|
|
122 |
# five |
|
|
123 |
use_RR = True |
|
|
124 |
norm_RR = True |
|
|
125 |
compute_morph = {'wvlt', 'HOS','myMorph', 'u-lbp'} |
|
|
126 |
main(multi_mode, 90, 90, do_preprocess, use_weight_class, maxRR, use_RR, norm_RR, compute_morph, oversamp_method, pca_k, feature_selection, do_cross_val, C_value, gamma_value, reduced_DS, leads_flag) |
|
|
127 |
|
|
|
128 |
""" |