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b/produceDatabase.py |
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""" |
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Produce train set and test set based on Apnea-ECG database. |
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""" |
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import numpy as np |
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from ECGSegment import ECGSegment |
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import os |
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def produce_database(database_name): |
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""" |
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:param database_name: |
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:return None: |
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""" |
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if database_name == ["apnea-ecg", "train"] or database_name == ["apnea-ecg", "test"]: |
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clear_id_set = np.load(database_name[0] + "_" + database_name[1] + "_clear_id.npy") |
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else: |
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raise Exception("Error database name.") |
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dataset = [] |
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RRI_set = [] |
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RAMP_set = [] |
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EDR_set = [] |
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label_set = [] |
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for id in clear_id_set: |
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eds = ECGSegment() |
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eds.global_id = id |
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eds.read_ecg_segment(1, database_name) |
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eds.read_rri_ramp_edr() |
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label_set.append(eds.label) |
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RRI_set.append(eds.RR_intervals) |
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RAMP_set.append(eds.R_peaks_amplitude) |
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EDR_set.append(eds.EDR) |
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dataset.append(eds) |
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# substract mean of RRI,RAMP and EDR, RAMP * 10, EDR * 10000 |
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mean = np.mean(RRI_set, axis=1) |
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mean = np.reshape(mean, (mean.shape[0], 1)) |
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rri_set = RRI_set - mean |
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rri_set = np.reshape(rri_set, (rri_set.shape[0], rri_set.shape[1], 1)) |
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mean = np.mean(RAMP_set, axis=1) |
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mean = np.reshape(mean, (mean.shape[0], 1)) |
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ramp_set = RAMP_set - mean |
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ramp_set = np.reshape(ramp_set, (ramp_set.shape[0], ramp_set.shape[1], 1)) |
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ramp_set = ramp_set * 100 |
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mean = np.mean(EDR_set, axis=1) |
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mean = np.reshape(mean, (mean.shape[0], 1)) |
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edr_set = EDR_set - mean |
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edr_set = np.reshape(edr_set, (edr_set.shape[0], edr_set.shape[1], 1)) |
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edr_set = edr_set * 10000 |
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rri_amp_edr_set = np.concatenate([rri_set, ramp_set, edr_set], axis=2) |
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if not os.path.exists("data/"): |
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os.makedirs("data/") |
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np.save("data/" + database_name[0] + "_" + database_name[1] + "_clear_dataset.npy", np.array(dataset)) |
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np.save("data/" + database_name[0] + "_" + database_name[1] + "_clear_rri.npy", np.array(rri_set)) |
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np.save("data/" + database_name[0] + "_" + database_name[1] + "_clear_ramp.npy", np.array(ramp_set)) |
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np.save("data/" + database_name[0] + "_" + database_name[1] + "_clear_edr.npy", np.array(edr_set)) |
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np.save("data/" + database_name[0] + "_" + database_name[1] + "_clear_rri_ramp_edr.npy", np.array(rri_amp_edr_set)) |
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np.save("data/" + database_name[0] + "_" + database_name[1] + "_clear_label.npy", np.array(label_set)) |
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if __name__ == '__main__': |
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# produce_database(["apnea-ecg", "train"]) |
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produce_database(["apnea-ecg", "test"]) |
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