--- a +++ b/diff_sex/config.py @@ -0,0 +1,71 @@ +name = "dmp_lassoxgboost" +names= "" +SUB_DIR = "output/new_1126" + +#ehr,cpg +#4years +#woman +#top +##50,25percentage,batch_size=100 +##6,4 years ;batch_size=100 + +#top5,10,15,20,25 +#TRAIN_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s.csv"%(name,names) +#TEST_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s_test.csv"%(name,names) + +#old +#TRAIN_FILE = "data\\20201126deepfm_feature_%s%s.csv"%(name,names) +#TEST_FILE = "data\\20201126deepfm_feature_%s%s_test.csv"%(name,names) + +#right sample 153 +#TEST_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s_right_test.csv"%(name,names) + +#Externaltest +#TEST_FILE = "data\\new_1126\\20210816deepfm_feature_%s%s_Externaltest.csv"%(name,names)#37 +#TEST_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s_Externaltest2.csv"%(name,names)#36+689 + +#no_HFpEF +#TEST_FILE = "data\\new_1126\\20210816deepfm_feature_%s%s_no_HFpEFtest.csv"%(name,names)#37 + +#diff sex +TRAIN_FILE = "data\\new_1126\\20210817deepfm_feature_%s%s_sex.csv"%(name,names) +TEST_FILE = "data\\new_1126\\20210817deepfm_feature_%s%s_sex_test.csv"%(name,names) +sex = 0 + + +NUM_SPLITS = 10 +RANDOM_SEED = 2017 + +# types of columns of the dataset dataframe +#CATEGORICAL_COLS = [ +#"Diuretic" +#] +CATEGORICAL_COLS = [ +"Sulfonamides","SEX" +] + +#NUMERIC_COLS = [ +# +##id3 = DMP lasso xgboost +#"Age","BMI","Creatinine.serum","Albumin.urine", +#"cg00522231","cg05845376","cg07041999","cg17766026","cg24205914", +#"cg08101977","cg25755428","cg05363438","cg13352914","cg03233656", +#"cg05481257","cg03556243","cg16781992","cg10083824","cg08614290", +#"cg21429551","cg00045910","cg10556349","cg21024264","cg27401945", +#"cg06344265","cg20051875","cg23299445","cg00495303","cg11853697" +#] +NUMERIC_COLS = [ + +#id3 = DMP lasso xgboost +"AGE8","BMI8","CREAT8","Albumin_urine", +"cg00522231","cg05845376","cg07041999","cg17766026","cg24205914", +"cg08101977","cg25755428","cg05363438","cg13352914","cg03233656", +"cg05481257","cg03556243","cg16781992","cg10083824","cg08614290", +"cg21429551","cg00045910","cg10556349","cg21024264","cg27401945", +"cg06344265","cg20051875","cg23299445","cg00495303","cg11853697" +] + +IGNORE_COLS = [ + "ID", + "target" +]