Diff of /diff_sex/config.py [000000] .. [d2c46b]

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+++ b/diff_sex/config.py
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+name = "dmp_lassoxgboost"
+names= ""
+SUB_DIR = "output/new_1126"
+
+#ehr,cpg
+#4years
+#woman
+#top
+##50,25percentage,batch_size=100
+##6,4 years ;batch_size=100
+
+#top5,10,15,20,25
+#TRAIN_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s.csv"%(name,names)
+#TEST_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s_test.csv"%(name,names)
+
+#old
+#TRAIN_FILE = "data\\20201126deepfm_feature_%s%s.csv"%(name,names)
+#TEST_FILE = "data\\20201126deepfm_feature_%s%s_test.csv"%(name,names)
+
+#right sample 153
+#TEST_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s_right_test.csv"%(name,names)
+
+#Externaltest
+#TEST_FILE = "data\\new_1126\\20210816deepfm_feature_%s%s_Externaltest.csv"%(name,names)#37
+#TEST_FILE = "data\\new_1126\\20210707deepfm_feature_%s%s_Externaltest2.csv"%(name,names)#36+689
+
+#no_HFpEF
+#TEST_FILE = "data\\new_1126\\20210816deepfm_feature_%s%s_no_HFpEFtest.csv"%(name,names)#37
+
+#diff sex
+TRAIN_FILE = "data\\new_1126\\20210817deepfm_feature_%s%s_sex.csv"%(name,names)
+TEST_FILE = "data\\new_1126\\20210817deepfm_feature_%s%s_sex_test.csv"%(name,names)
+sex = 0
+
+
+NUM_SPLITS = 10
+RANDOM_SEED = 2017
+
+# types of columns of the dataset dataframe
+#CATEGORICAL_COLS = [
+#"Diuretic"
+#]
+CATEGORICAL_COLS = [
+"Sulfonamides","SEX"
+]
+
+#NUMERIC_COLS = [
+#
+##id3 = DMP lasso xgboost
+#"Age","BMI","Creatinine.serum","Albumin.urine",
+#"cg00522231","cg05845376","cg07041999","cg17766026","cg24205914",
+#"cg08101977","cg25755428","cg05363438","cg13352914","cg03233656",
+#"cg05481257","cg03556243","cg16781992","cg10083824","cg08614290",
+#"cg21429551","cg00045910","cg10556349","cg21024264","cg27401945",
+#"cg06344265","cg20051875","cg23299445","cg00495303","cg11853697"
+#]
+NUMERIC_COLS = [
+
+#id3 = DMP lasso xgboost
+"AGE8","BMI8","CREAT8","Albumin_urine",
+"cg00522231","cg05845376","cg07041999","cg17766026","cg24205914",
+"cg08101977","cg25755428","cg05363438","cg13352914","cg03233656",
+"cg05481257","cg03556243","cg16781992","cg10083824","cg08614290",
+"cg21429551","cg00045910","cg10556349","cg21024264","cg27401945",
+"cg06344265","cg20051875","cg23299445","cg00495303","cg11853697"
+]
+
+IGNORE_COLS = [
+    "ID", 
+    "target"     
+]