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b/tools/convert_datasets/hrf.py |
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# Copyright (c) OpenMMLab. All rights reserved. |
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import argparse |
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import os |
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import os.path as osp |
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import tempfile |
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import zipfile |
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import mmcv |
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HRF_LEN = 15 |
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TRAINING_LEN = 5 |
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def parse_args(): |
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parser = argparse.ArgumentParser( |
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description='Convert HRF dataset to mmsegmentation format') |
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parser.add_argument('healthy_path', help='the path of healthy.zip') |
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parser.add_argument( |
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'healthy_manualsegm_path', help='the path of healthy_manualsegm.zip') |
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parser.add_argument('glaucoma_path', help='the path of glaucoma.zip') |
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parser.add_argument( |
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'glaucoma_manualsegm_path', help='the path of glaucoma_manualsegm.zip') |
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parser.add_argument( |
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'diabetic_retinopathy_path', |
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help='the path of diabetic_retinopathy.zip') |
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parser.add_argument( |
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'diabetic_retinopathy_manualsegm_path', |
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help='the path of diabetic_retinopathy_manualsegm.zip') |
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parser.add_argument('--tmp_dir', help='path of the temporary directory') |
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parser.add_argument('-o', '--out_dir', help='output path') |
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args = parser.parse_args() |
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return args |
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def main(): |
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args = parse_args() |
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images_path = [ |
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args.healthy_path, args.glaucoma_path, args.diabetic_retinopathy_path |
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] |
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annotations_path = [ |
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args.healthy_manualsegm_path, args.glaucoma_manualsegm_path, |
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args.diabetic_retinopathy_manualsegm_path |
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] |
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if args.out_dir is None: |
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out_dir = osp.join('data', 'HRF') |
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else: |
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out_dir = args.out_dir |
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print('Making directories...') |
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mmcv.mkdir_or_exist(out_dir) |
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mmcv.mkdir_or_exist(osp.join(out_dir, 'images')) |
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mmcv.mkdir_or_exist(osp.join(out_dir, 'images', 'training')) |
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mmcv.mkdir_or_exist(osp.join(out_dir, 'images', 'validation')) |
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mmcv.mkdir_or_exist(osp.join(out_dir, 'annotations')) |
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mmcv.mkdir_or_exist(osp.join(out_dir, 'annotations', 'training')) |
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mmcv.mkdir_or_exist(osp.join(out_dir, 'annotations', 'validation')) |
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print('Generating images...') |
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for now_path in images_path: |
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with tempfile.TemporaryDirectory(dir=args.tmp_dir) as tmp_dir: |
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zip_file = zipfile.ZipFile(now_path) |
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zip_file.extractall(tmp_dir) |
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assert len(os.listdir(tmp_dir)) == HRF_LEN, \ |
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'len(os.listdir(tmp_dir)) != {}'.format(HRF_LEN) |
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for filename in sorted(os.listdir(tmp_dir))[:TRAINING_LEN]: |
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img = mmcv.imread(osp.join(tmp_dir, filename)) |
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mmcv.imwrite( |
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img, |
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osp.join(out_dir, 'images', 'training', |
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osp.splitext(filename)[0] + '.png')) |
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for filename in sorted(os.listdir(tmp_dir))[TRAINING_LEN:]: |
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img = mmcv.imread(osp.join(tmp_dir, filename)) |
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mmcv.imwrite( |
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img, |
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osp.join(out_dir, 'images', 'validation', |
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osp.splitext(filename)[0] + '.png')) |
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print('Generating annotations...') |
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for now_path in annotations_path: |
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with tempfile.TemporaryDirectory(dir=args.tmp_dir) as tmp_dir: |
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zip_file = zipfile.ZipFile(now_path) |
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zip_file.extractall(tmp_dir) |
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assert len(os.listdir(tmp_dir)) == HRF_LEN, \ |
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'len(os.listdir(tmp_dir)) != {}'.format(HRF_LEN) |
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for filename in sorted(os.listdir(tmp_dir))[:TRAINING_LEN]: |
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img = mmcv.imread(osp.join(tmp_dir, filename)) |
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# The annotation img should be divided by 128, because some of |
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# the annotation imgs are not standard. We should set a |
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# threshold to convert the nonstandard annotation imgs. The |
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# value divided by 128 is equivalent to '1 if value >= 128 |
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# else 0' |
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mmcv.imwrite( |
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img[:, :, 0] // 128, |
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osp.join(out_dir, 'annotations', 'training', |
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osp.splitext(filename)[0] + '.png')) |
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for filename in sorted(os.listdir(tmp_dir))[TRAINING_LEN:]: |
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img = mmcv.imread(osp.join(tmp_dir, filename)) |
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mmcv.imwrite( |
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img[:, :, 0] // 128, |
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osp.join(out_dir, 'annotations', 'validation', |
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osp.splitext(filename)[0] + '.png')) |
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print('Done!') |
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if __name__ == '__main__': |
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main() |