added	.gitignore
added	EXPERIMENTS.md
added	README.md
added	download.sh
added	research_paper_code/notebooks/Manhattan plot.ipynb
added	research_paper_code/notebooks/compare.ipynb
added	research_paper_code/notebooks/map.R
added	research_paper_code/notebooks/map.ipynb
added	research_paper_code/notebooks/map_synth.ipynb
added	research_paper_code/src/data.manip.R
added	research_paper_code/src/gemma.R
added	research_paper_code/src/map_gwas_batch.R
added	research_paper_code/src/misc.R
added	research_paper_code/src/qtl.analyses.R
added	research_paper_code/src/read.data.R
added	synthetics/01_build_phenome_training_data.ipynb
added	synthetics/02_create_synthetic_mouse_phenomes.ipynb
added	synthetics/03_build_genome_training_data.ipynb
added	synthetics/04_create_synthetic_mouse_genomes.ipynb
added	synthetics/05_compare_associations.ipynb
added	synthetics/Optional_tune_synthetic_training_params.ipynb