--- a
+++ b/man/alignStrands.Rd
@@ -0,0 +1,34 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/shaPRS.R
+\name{alignStrands}
+\alias{alignStrands}
+\title{Aligns strands between 2 summary statistics data}
+\usage{
+alignStrands(
+  inputData,
+  A1.x = "A1.x",
+  A2.x = "A2.x",
+  A1.y = "A1.y",
+  A2.y = "A2.y",
+  discardAmbiguousSNPs = T
+)
+}
+\arguments{
+\item{inputData}{dataframe of both studies with columns:  A1.x, A2.x, A1.y, A2.y}
+
+\item{A1.x}{(optional) column name for A1 allele in study 1 (default "A1.x")}
+
+\item{A2.x}{(optional) column name for A2 allele in study 1 (default "A2.x")}
+
+\item{A1.y}{(optional) column name for A1 allele in study 2 (default "A1.y")}
+
+\item{A2.y}{(optional) column name for A1 allele in study 2 (default "A2.y")}
+
+\item{discardAmbiguousSNPs}{(optional) if ambiguous SNPs (G/C and A/T) should be discarded (default TRUE)}
+}
+\value{
+returns real value of the approximate correlation
+}
+\description{
+Aligns strands between 2 summary statistics data
+}