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--- a +++ b/inst/extdata/pop_adjustinput @@ -0,0 +1,2201 @@ +SNP CHR BP Beta_A SE_A A1.x A2.x Beta_B SE_B A1.y A2.y +rs1 1 41555730 -0.0092 0.019 C T -0.012517 0.01586524 C T +rs2 1 40400007 0.022 0.016 A G -0.0094596 0.01398449 A G +rs3 1 15984178 -0.026 0.018 G T -0.01799045 0.01309536 G T +rs4 1 32415963 -0.019 0.018 T C -0.02561999 0.0185484 T C +rs5 1 42515277 -0.026 0.028 A G 0.00602508 0.01587842 A G +rs6 1 38643585 0.011 0.02 T G 0.00672865 0.01252441 T G +rs7 1 29828466 0.011 0.021 C A -0.00938398 0.01406174 C A +rs8 1 16473961 -0.03 0.02 T G -0.00106014 0.0124997 T G +rs9 1 35834630 0.0051 0.022 G A 0.00619233 0.02465503 G A +rs10 1 30201119 0.003 0.021 A G -0.02333649 0.01353879 A G +rs11 1 38491095 0.027 0.016 G A -0.01032513 0.01300359 G A +rs12 1 38492657 0.031 0.016 G T -0.00789083 0.01306915 G T +rs13 1 44810802 -0.028 0.016 T C -0.00366336 0.0158416 T C +rs14 1 44810756 -0.028 0.016 T G -0.00119417 0.01546658 T G +rs15 1 33467660 -0.0012 0.017 T C -0.01301843 0.01280396 T C +rs16 1 31766987 0.023 0.02 T C 0.00440431 0.01317194 T C +rs17 1 46121910 0.0091 0.018 C T -0.00186206 0.01294115 C T +rs18 1 17817942 0.0082 0.027 T C 0.0105639 0.0140364 T C +rs19 1 41308948 -0.012 0.018 G A 0.00782238 0.02206631 G A +rs20 1 39068872 0.011 0.016 A G -0.01436534 0.01239295 A G +rs21 1 34398716 -0.013 0.017 T C -0.01548516 0.01433716 T C +rs22 1 37443480 -0.02 0.017 G T -0.00039107 0.01286412 G T +rs23 1 36469757 0.0096 0.017 A G 0.01614233 0.01547312 A G +rs24 1 40899177 0.024 0.017 A G -0.01594503 0.01354338 A G +rs25 1 36296864 0.049 0.024 T G 0.00277757 0.0188521 T G +rs26 1 46670752 0.02 0.016 G A 0.00214618 0.01350428 G A +rs27 1 25275539 0.019 0.018 C A 0.00312599 0.0173132 C A +rs28 1 41265404 0.025 0.025 G A -0.00659514 0.01519744 G A +rs29 1 15845052 -0.063 0.038 G A 0.01500746 0.01786386 G A +rs30 1 39707132 -0.045 0.023 C T -0.00563086 0.02714441 C T +rs31 1 35839067 -0.034 0.019 T C 0.01225413 0.01283227 T C +rs32 1 24331592 -0.00014 0.016 A G 0.02095942 0.0130303 A G +rs33 1 38330620 -0.0049 0.019 T G -0.01012102 0.013292 T G +rs34 1 35034653 -0.038 0.037 T C -0.00679158 0.02805909 T C +rs35 1 47877594 -0.011 0.016 C T -0.01034652 0.01240096 C T +rs36 1 33002145 0.042 0.061 A C 0.00060178 0.0161968 A C +rs37 1 38010332 -0.029 0.02 T C -0.02021658 0.01355851 T C +rs38 1 43623281 0.047 0.016 T G 0.0083358 0.01444629 T G +rs39 1 20829922 0.0023 0.036 A G -0.00892863 0.02221711 A G +rs40 1 39040561 0.0022 0.016 A G -0.00433645 0.01280758 A G +rs41 1 25677407 -0.0049 0.029 C A 0.08207114 0.03504068 C A +rs42 1 40207796 -0.056 0.024 C T 0.00360047 0.01315797 C T +rs43 1 22217613 -0.019 0.033 T C 0.00129973 0.01276881 T C +rs44 1 39643666 0.0025 0.018 C T -0.00896552 0.01493236 C T +rs45 1 38268859 -0.012 0.016 A G 0.01518879 0.01552289 A G +rs46 1 44306885 -0.018 0.016 A G -0.01687283 0.01282863 A G +rs47 1 38643772 0.05 0.019 G T -0.00843522 0.01555953 G T +rs48 1 26119438 -0.015 0.019 A G -0.00827738 0.01251902 A G +rs49 1 35695461 -0.015 0.016 G A -0.00918645 0.01259468 G A +rs50 1 33292070 -0.0026 0.023 C T 0.01311584 0.01635016 C T +rs51 1 41268738 -0.0062 0.02 T C 0.04039877 0.02222404 T C +rs52 1 30613769 -0.0091 0.016 G A 0.0142623 0.01862879 G A +rs53 1 41525052 0.0027 0.023 A G 0.01188469 0.0147042 A G +rs54 1 37129292 -0.0029 0.016 C T 0.01868044 0.01272039 C T +rs55 1 21730254 -0.0045 0.02 A C -0.01237319 0.02037415 A C +rs56 1 31319999 -0.0038 0.02 T C -0.01495013 0.01465853 T C +rs57 1 20675783 0.0096 0.018 G A 0.00295235 0.0135872 G A +rs58 1 20676645 0.012 0.018 G T -0.00114818 0.0133964 G T +rs59 1 33182482 0.0012 0.016 A G -0.02712472 0.0131184 A G +rs60 1 35895632 0.015 0.02 G A 0.00369806 0.01244641 G A +rs61 1 28407139 -0.023 0.016 G A 0.00131604 0.01272274 G A +rs62 1 42253585 -0.0096 0.019 A G 0.01737506 0.01399811 A G +rs63 1 35825266 -0.028 0.023 G A -0.01070082 0.01404592 G A +rs64 1 35825100 -0.056 0.02 C A -0.01106169 0.01378221 C A +rs65 1 26866812 -0.045 0.022 T C -0.0150312 0.0266168 T C +rs66 1 20823060 0.053 0.039 C A -0.06947225 0.0364012 C A +rs67 1 38061622 0.0047 0.017 A C -0.00291524 0.01337253 A C +rs68 1 31996108 0.029 0.017 A G 0.00508113 0.01266833 A G +rs69 1 34529041 0.0094 0.024 C T 0.01563489 0.0176314 C T +rs70 1 35698390 -0.017 0.017 C T -0.00846842 0.0126054 C T +rs71 1 23623756 0.0019 0.041 C T -0.01548297 0.01615711 C T +rs72 1 40498014 -0.00069 0.018 A G -0.00558938 0.01243344 A G +rs73 1 40498109 -0.015 0.024 G A -0.0136157 0.0161236 G A +rs74 1 29531827 -0.035 0.022 T C -0.00183793 0.01537719 T C +rs75 1 25950881 0.01 0.016 G A 0.00564437 0.01278012 G A +rs76 1 47279147 0.0012 0.023 T C 0.00863309 0.01253453 T C +rs77 1 18341367 0.024 0.022 T G 0.01305087 0.01482259 T G +rs78 1 18341062 0.013 0.016 A G 0.02932215 0.01251369 A G +rs79 1 27129093 0.0041 0.023 A G 0.03026246 0.01300955 A G +rs80 1 33171697 0.013 0.022 T C -0.01992984 0.01252702 T C +rs81 1 24334028 0.012 0.021 C A -0.00174388 0.0156712 C A +rs82 1 33949423 0.015 0.018 C T -0.01074551 0.01609282 C T +rs83 1 33949306 0.015 0.018 C T -0.00865275 0.01647357 C T +rs84 1 40029361 -0.01 0.018 G T 0.00771547 0.01489168 G T +rs85 1 42659692 -0.002 0.017 T C -0.00689014 0.01416355 T C +rs86 1 42525007 0.014 0.033 A G 0.00275327 0.01575449 A G +rs87 1 38448880 0.028 0.016 C T -0.00629959 0.01244185 C T +rs88 1 20566037 -0.0016 0.024 C T 0.01272552 0.01261168 C T +rs89 1 36857488 0.034 0.025 T C 0.01678775 0.016095 T C +rs90 1 42106761 0.015 0.024 A G -0.00033092 0.01377821 A G +rs91 1 42005288 0.034 0.019 T C 0.00450276 0.01316791 T C +rs92 1 17033636 0.024 0.018 A G 0.02253703 0.01334245 A G +rs93 1 22743803 -0.001 0.017 A G 0.01461084 0.01578824 A G +rs94 1 39234818 -0.0048 0.017 T C -0.00023323 0.01253725 T C +rs95 1 39525549 0.021 0.022 C A -0.00680891 0.01380864 C A +rs96 1 31011393 -0.008 0.017 A G -0.00475334 0.01288391 A G +rs97 1 32703074 -0.009 0.016 A C 0.0236928 0.02403153 A C +rs98 1 23005809 -0.025 0.017 G A -0.00567069 0.01260204 G A +rs99 1 20678826 0.019 0.019 G A -0.00582265 0.01396707 G A +rs100 1 31322913 -0.0026 0.02 T C -0.01453078 0.01465396 T C +rs101 2 41555730 -0.0092 0.019 C T -0.012517 0.01586524 C T +rs102 2 40400007 0.022 0.016 A G -0.0094596 0.01398449 A G +rs103 2 15984178 -0.026 0.018 G T -0.01799045 0.01309536 G T +rs104 2 32415963 -0.019 0.018 T C -0.02561999 0.0185484 T C +rs105 2 42515277 -0.026 0.028 A G 0.00602508 0.01587842 A G +rs106 2 38643585 0.011 0.02 T G 0.00672865 0.01252441 T G +rs107 2 29828466 0.011 0.021 C A -0.00938398 0.01406174 C A +rs108 2 16473961 -0.03 0.02 T G -0.00106014 0.0124997 T G +rs109 2 35834630 0.0051 0.022 G A 0.00619233 0.02465503 G A +rs110 2 30201119 0.003 0.021 A G -0.02333649 0.01353879 A G +rs111 2 38491095 0.027 0.016 G A -0.01032513 0.01300359 G A +rs112 2 38492657 0.031 0.016 G T -0.00789083 0.01306915 G T +rs113 2 44810802 -0.028 0.016 T C -0.00366336 0.0158416 T C +rs114 2 44810756 -0.028 0.016 T G -0.00119417 0.01546658 T G +rs115 2 33467660 -0.0012 0.017 T C -0.01301843 0.01280396 T C +rs116 2 31766987 0.023 0.02 T C 0.00440431 0.01317194 T C +rs117 2 46121910 0.0091 0.018 C T -0.00186206 0.01294115 C T +rs118 2 17817942 0.0082 0.027 T C 0.0105639 0.0140364 T C +rs119 2 41308948 -0.012 0.018 G A 0.00782238 0.02206631 G A +rs120 2 39068872 0.011 0.016 A G -0.01436534 0.01239295 A G +rs121 2 34398716 -0.013 0.017 T C -0.01548516 0.01433716 T C +rs122 2 37443480 -0.02 0.017 G T -0.00039107 0.01286412 G T +rs123 2 36469757 0.0096 0.017 A G 0.01614233 0.01547312 A G +rs124 2 40899177 0.024 0.017 A G -0.01594503 0.01354338 A G +rs125 2 36296864 0.049 0.024 T G 0.00277757 0.0188521 T G +rs126 2 46670752 0.02 0.016 G A 0.00214618 0.01350428 G A +rs127 2 25275539 0.019 0.018 C A 0.00312599 0.0173132 C A +rs128 2 41265404 0.025 0.025 G A -0.00659514 0.01519744 G A +rs129 2 15845052 -0.063 0.038 G A 0.01500746 0.01786386 G A +rs130 2 39707132 -0.045 0.023 C T -0.00563086 0.02714441 C T +rs131 2 35839067 -0.034 0.019 T C 0.01225413 0.01283227 T C +rs132 2 24331592 -0.00014 0.016 A G 0.02095942 0.0130303 A G +rs133 2 38330620 -0.0049 0.019 T G -0.01012102 0.013292 T G +rs134 2 35034653 -0.038 0.037 T C -0.00679158 0.02805909 T C +rs135 2 47877594 -0.011 0.016 C T -0.01034652 0.01240096 C T +rs136 2 33002145 0.042 0.061 A C 0.00060178 0.0161968 A C +rs137 2 38010332 -0.029 0.02 T C -0.02021658 0.01355851 T C +rs138 2 43623281 0.047 0.016 T G 0.0083358 0.01444629 T G +rs139 2 20829922 0.0023 0.036 A G -0.00892863 0.02221711 A G +rs140 2 39040561 0.0022 0.016 A G -0.00433645 0.01280758 A G +rs141 2 25677407 -0.0049 0.029 C A 0.08207114 0.03504068 C A +rs142 2 40207796 -0.056 0.024 C T 0.00360047 0.01315797 C T +rs143 2 22217613 -0.019 0.033 T C 0.00129973 0.01276881 T C +rs144 2 39643666 0.0025 0.018 C T -0.00896552 0.01493236 C T +rs145 2 38268859 -0.012 0.016 A G 0.01518879 0.01552289 A G +rs146 2 44306885 -0.018 0.016 A G -0.01687283 0.01282863 A G +rs147 2 38643772 0.05 0.019 G T -0.00843522 0.01555953 G T +rs148 2 26119438 -0.015 0.019 A G -0.00827738 0.01251902 A G +rs149 2 35695461 -0.015 0.016 G A -0.00918645 0.01259468 G A +rs150 2 33292070 -0.0026 0.023 C T 0.01311584 0.01635016 C T +rs151 2 41268738 -0.0062 0.02 T C 0.04039877 0.02222404 T C +rs152 2 30613769 -0.0091 0.016 G A 0.0142623 0.01862879 G A +rs153 2 41525052 0.0027 0.023 A G 0.01188469 0.0147042 A G +rs154 2 37129292 -0.0029 0.016 C T 0.01868044 0.01272039 C T +rs155 2 21730254 -0.0045 0.02 A C -0.01237319 0.02037415 A C +rs156 2 31319999 -0.0038 0.02 T C -0.01495013 0.01465853 T C +rs157 2 20675783 0.0096 0.018 G A 0.00295235 0.0135872 G A +rs158 2 20676645 0.012 0.018 G T -0.00114818 0.0133964 G T +rs159 2 33182482 0.0012 0.016 A G -0.02712472 0.0131184 A G +rs160 2 35895632 0.015 0.02 G A 0.00369806 0.01244641 G A +rs161 2 28407139 -0.023 0.016 G A 0.00131604 0.01272274 G A +rs162 2 42253585 -0.0096 0.019 A G 0.01737506 0.01399811 A G +rs163 2 35825266 -0.028 0.023 G A -0.01070082 0.01404592 G A +rs164 2 35825100 -0.056 0.02 C A -0.01106169 0.01378221 C A +rs165 2 26866812 -0.045 0.022 T C -0.0150312 0.0266168 T C +rs166 2 20823060 0.053 0.039 C A -0.06947225 0.0364012 C A +rs167 2 38061622 0.0047 0.017 A C -0.00291524 0.01337253 A C +rs168 2 31996108 0.029 0.017 A G 0.00508113 0.01266833 A G +rs169 2 34529041 0.0094 0.024 C T 0.01563489 0.0176314 C T +rs170 2 35698390 -0.017 0.017 C T -0.00846842 0.0126054 C T +rs171 2 23623756 0.0019 0.041 C T -0.01548297 0.01615711 C T +rs172 2 40498014 -0.00069 0.018 A G -0.00558938 0.01243344 A G +rs173 2 40498109 -0.015 0.024 G A -0.0136157 0.0161236 G A +rs174 2 29531827 -0.035 0.022 T C -0.00183793 0.01537719 T C +rs175 2 25950881 0.01 0.016 G A 0.00564437 0.01278012 G A +rs176 2 47279147 0.0012 0.023 T C 0.00863309 0.01253453 T C +rs177 2 18341367 0.024 0.022 T G 0.01305087 0.01482259 T G +rs178 2 18341062 0.013 0.016 A G 0.02932215 0.01251369 A G +rs179 2 27129093 0.0041 0.023 A G 0.03026246 0.01300955 A G +rs180 2 33171697 0.013 0.022 T C -0.01992984 0.01252702 T C +rs181 2 24334028 0.012 0.021 C A -0.00174388 0.0156712 C A +rs182 2 33949423 0.015 0.018 C T -0.01074551 0.01609282 C T +rs183 2 33949306 0.015 0.018 C T -0.00865275 0.01647357 C T +rs184 2 40029361 -0.01 0.018 G T 0.00771547 0.01489168 G T +rs185 2 42659692 -0.002 0.017 T C -0.00689014 0.01416355 T C +rs186 2 42525007 0.014 0.033 A G 0.00275327 0.01575449 A G +rs187 2 38448880 0.028 0.016 C T -0.00629959 0.01244185 C T +rs188 2 20566037 -0.0016 0.024 C T 0.01272552 0.01261168 C T +rs189 2 36857488 0.034 0.025 T C 0.01678775 0.016095 T C +rs190 2 42106761 0.015 0.024 A G -0.00033092 0.01377821 A G +rs191 2 42005288 0.034 0.019 T C 0.00450276 0.01316791 T C +rs192 2 17033636 0.024 0.018 A G 0.02253703 0.01334245 A G +rs193 2 22743803 -0.001 0.017 A G 0.01461084 0.01578824 A G +rs194 2 39234818 -0.0048 0.017 T C -0.00023323 0.01253725 T C +rs195 2 39525549 0.021 0.022 C A -0.00680891 0.01380864 C A +rs196 2 31011393 -0.008 0.017 A G -0.00475334 0.01288391 A G +rs197 2 32703074 -0.009 0.016 A C 0.0236928 0.02403153 A C +rs198 2 23005809 -0.025 0.017 G A -0.00567069 0.01260204 G A +rs199 2 20678826 0.019 0.019 G A -0.00582265 0.01396707 G A +rs200 2 31322913 -0.0026 0.02 T C -0.01453078 0.01465396 T C +rs201 3 41555730 -0.0092 0.019 C T -0.012517 0.01586524 C T +rs202 3 40400007 0.022 0.016 A G -0.0094596 0.01398449 A G +rs203 3 15984178 -0.026 0.018 G T -0.01799045 0.01309536 G T +rs204 3 32415963 -0.019 0.018 T C -0.02561999 0.0185484 T C +rs205 3 42515277 -0.026 0.028 A G 0.00602508 0.01587842 A G +rs206 3 38643585 0.011 0.02 T G 0.00672865 0.01252441 T G +rs207 3 29828466 0.011 0.021 C A -0.00938398 0.01406174 C A +rs208 3 16473961 -0.03 0.02 T G -0.00106014 0.0124997 T G +rs209 3 35834630 0.0051 0.022 G A 0.00619233 0.02465503 G A +rs210 3 30201119 0.003 0.021 A G -0.02333649 0.01353879 A G +rs211 3 38491095 0.027 0.016 G A -0.01032513 0.01300359 G A +rs212 3 38492657 0.031 0.016 G T -0.00789083 0.01306915 G T +rs213 3 44810802 -0.028 0.016 T C -0.00366336 0.0158416 T C +rs214 3 44810756 -0.028 0.016 T G -0.00119417 0.01546658 T G +rs215 3 33467660 -0.0012 0.017 T C -0.01301843 0.01280396 T C +rs216 3 31766987 0.023 0.02 T C 0.00440431 0.01317194 T C +rs217 3 46121910 0.0091 0.018 C T -0.00186206 0.01294115 C T +rs218 3 17817942 0.0082 0.027 T C 0.0105639 0.0140364 T C +rs219 3 41308948 -0.012 0.018 G A 0.00782238 0.02206631 G A +rs220 3 39068872 0.011 0.016 A G -0.01436534 0.01239295 A G +rs221 3 34398716 -0.013 0.017 T C -0.01548516 0.01433716 T C +rs222 3 37443480 -0.02 0.017 G T -0.00039107 0.01286412 G T +rs223 3 36469757 0.0096 0.017 A G 0.01614233 0.01547312 A G +rs224 3 40899177 0.024 0.017 A G -0.01594503 0.01354338 A G +rs225 3 36296864 0.049 0.024 T G 0.00277757 0.0188521 T G +rs226 3 46670752 0.02 0.016 G A 0.00214618 0.01350428 G A +rs227 3 25275539 0.019 0.018 C A 0.00312599 0.0173132 C A +rs228 3 41265404 0.025 0.025 G A -0.00659514 0.01519744 G A +rs229 3 15845052 -0.063 0.038 G A 0.01500746 0.01786386 G A +rs230 3 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