import { ExperimentConfig, GeneAssembly } from '../../types';
import { GenomicAnalysisPipeline, GenomicAnalysisResult } from './genomicAnalysis';
import { QuantumSimulationPipeline, QuantumSimulationResult } from './simulationPipeline';

export interface ExperimentResult {
  id: string;
  experimentConfig: ExperimentConfig;
  geneAssembly: GeneAssembly;
  genomicAnalysis: GenomicAnalysisResult;
  simulation: QuantumSimulationResult;
  environmentalData: {
    timestamp: string;
    measurements: {
      temperature: number[];
      humidity: number[];
      soilMoisture: number[];
      lightIntensity: number[];
    };
  };
  status: 'running' | 'completed' | 'failed';
  startTime: string;
  endTime?: string;
  error?: string;
}

export class ExperimentPipeline {
  static async runExperiment(
    config: ExperimentConfig,
    assembly: GeneAssembly
  ): Promise<ExperimentResult> {
    const startTime = new Date().toISOString();

    try {
      // Run genomic analysis
      const genomicAnalysis = await GenomicAnalysisPipeline.analyzeGeneAssembly(assembly);

      // Run quantum simulation
      const simulation = await QuantumSimulationPipeline.runSimulation(config);

      // Generate environmental data (24 hour period, measurements every hour)
      const timePoints = Array.from({ length: 24 }, (_, i) => i);
      const environmentalData = {
        timestamp: new Date().toISOString(),
        measurements: {
          temperature: timePoints.map(() => config.environmentalParams.temperature + (Math.random() - 0.5) * 2),
          humidity: timePoints.map(() => config.environmentalParams.humidity + (Math.random() - 0.5) * 5),
          soilMoisture: timePoints.map(() => 0.4 + (Math.random() - 0.5) * 0.1),
          lightIntensity: timePoints.map(() => 800 + (Math.random() - 0.5) * 100),
        },
      };

      return {
        id: Math.random().toString(36).substr(2, 9),
        experimentConfig: config,
        geneAssembly: assembly,
        genomicAnalysis,
        simulation,
        environmentalData,
        status: 'completed',
        startTime,
        endTime: new Date().toISOString(),
      };
    } catch (error) {
      return {
        id: Math.random().toString(36).substr(2, 9),
        experimentConfig: config,
        geneAssembly: assembly,
        genomicAnalysis: {} as GenomicAnalysisResult,
        simulation: {} as QuantumSimulationResult,
        environmentalData: {
          timestamp: startTime,
          measurements: {
            temperature: [],
            humidity: [],
            soilMoisture: [],
            lightIntensity: [],
          },
        },
        status: 'failed',
        startTime,
        endTime: new Date().toISOString(),
        error: error instanceof Error ? error.message : 'Unknown error occurred',
      };
    }
  }

  static async monitorExperiment(experimentId: string): Promise<void> {
    // In a real implementation, this would connect to real-time monitoring systems
    await new Promise(resolve => setTimeout(resolve, 1000));
  }

  static async stopExperiment(experimentId: string): Promise<void> {
    // In a real implementation, this would safely stop running processes
    await new Promise(resolve => setTimeout(resolve, 1000));
  }
}