% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/sim_ctd.R

\name{sim_ctd}

\alias{sim_ctd}

\title{Simulate contact data from a transmission tree}

\usage{

sim_ctd(tTree, eps, lambda)

}

\arguments{

\item{tTree}{a dataframe or matrix of two columns, with each row providing

the ids (numerical or as characters) of a transmission pair}

\item{eps}{the contact reporting coverage, defined as the probability of

reporting a contact (transmission pair or not)}

\item{lambda}{the non-infectious contact rate, defined as the probability

of contact between a non-transmission pair.}

}

\description{

This function simulates contact data from a transmission tree. The

model assumes that all transmission pairs have experienced contact, and that

there is no false-positive reporting of contacts. The probability of contact

occuring between a non-transmision pair is given by the parameter lambda. The

probability of reporting a contact (transmission pair or not) is given by the

parameters eps.

}

\examples{

## load data

x <- fake_outbreak

tTree <- data.frame(from = x$ances, to = seq_along(x$ances))

## simulate contact data with coverage of 80\% and 10\% probability of

## contact between non-transmission pairs

ctd <- outbreaker2:::sim_ctd(tTree, eps = 0.8, lambda = 0.1)

## inspect contact data

head(ctd)

}

\author{

Finlay Campbell (\email{finlaycampbell93@gmail.com})

}