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b/man/fake_outbreak.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/doc_data.R |
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\docType{data} |
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\name{fake_outbreak} |
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\alias{fake_outbreak} |
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\title{Small simulated outbreak} |
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\format{ |
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An object of class \code{list} of length 6. |
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} |
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\usage{ |
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fake_outbreak |
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} |
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\description{ |
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This dataset is a small (30 cases) simulated outbreak originally used to |
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illustrate \code{outbreaker}, and used for the same purposes in |
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\code{outbreaker2}. This list contains the following: |
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} |
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\details{ |
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\itemize{ |
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\item \code{$onset}: A vector of integers representing dates of onset. |
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\item \code{$sample}: A vector of integers representing the dates of isolation. |
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\item \code{$dna}: A DNAbin matrix of pathogen genome sequences. |
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\item \code{$w}: A numeric vector giving the empirical distribution of the |
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generation time. |
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\item \code{$ances}: A vector of integers indicating, for each case, the true |
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infectors. \code{NA} represents imported cases. |
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} |
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} |
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\examples{ |
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names(fake_outbreak) |
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fake_outbreak |
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} |
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\author{ |
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Thibaut Jombart \email{thibautjombart@gmail.com} |
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} |
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\keyword{datasets} |