--- a +++ b/man/fake_outbreak.Rd @@ -0,0 +1,43 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/doc_data.R +\docType{data} +\name{fake_outbreak} +\alias{fake_outbreak} +\title{Small simulated outbreak} +\format{ +An object of class \code{list} of length 6. +} +\usage{ +fake_outbreak +} +\description{ +This dataset is a small (30 cases) simulated outbreak originally used to +illustrate \code{outbreaker}, and used for the same purposes in +\code{outbreaker2}. This list contains the following: +} +\details{ +\itemize{ + +\item \code{$onset}: A vector of integers representing dates of onset. + +\item \code{$sample}: A vector of integers representing the dates of isolation. + +\item \code{$dna}: A DNAbin matrix of pathogen genome sequences. + +\item \code{$w}: A numeric vector giving the empirical distribution of the +generation time. + +\item \code{$ances}: A vector of integers indicating, for each case, the true +infectors. \code{NA} represents imported cases. + +} +} +\examples{ +names(fake_outbreak) +fake_outbreak + +} +\author{ +Thibaut Jombart \email{thibautjombart@gmail.com} +} +\keyword{datasets}