a b/docs/articles/index.html
1
<!-- Generated by pkgdown: do not edit by hand -->
2
<!DOCTYPE html>
3
<html lang="en">
4
  <head>
5
  <meta charset="utf-8">
6
<meta http-equiv="X-UA-Compatible" content="IE=edge">
7
<meta name="viewport" content="width=device-width, initial-scale=1.0">
8
9
<title>Articles • outbreaker2</title>
10
11
12
<!-- jquery -->
13
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
14
<!-- Bootstrap -->
15
16
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous" />
17
18
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
19
20
<!-- bootstrap-toc -->
21
<link rel="stylesheet" href="../bootstrap-toc.css">
22
<script src="../bootstrap-toc.js"></script>
23
24
<!-- Font Awesome icons -->
25
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
26
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
27
28
<!-- clipboard.js -->
29
<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
30
31
<!-- headroom.js -->
32
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
33
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
34
35
<!-- pkgdown -->
36
<link href="../pkgdown.css" rel="stylesheet">
37
<script src="../pkgdown.js"></script>
38
39
40
41
42
<meta property="og:title" content="Articles" />
43
44
45
46
47
<!-- mathjax -->
48
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
49
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
50
51
<!--[if lt IE 9]>
52
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
53
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
54
<![endif]-->
55
56
57
58
  </head>
59
60
  <body data-spy="scroll" data-target="#toc">
61
    <div class="container template-article-index">
62
      <header>
63
      <div class="navbar navbar-default navbar-fixed-top" role="navigation">
64
  <div class="container">
65
    <div class="navbar-header">
66
      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
67
        <span class="sr-only">Toggle navigation</span>
68
        <span class="icon-bar"></span>
69
        <span class="icon-bar"></span>
70
        <span class="icon-bar"></span>
71
      </button>
72
      <span class="navbar-brand">
73
        <a class="navbar-link" href="../index.html">outbreaker2</a>
74
        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.1.2</span>
75
      </span>
76
    </div>
77
78
    <div id="navbar" class="navbar-collapse collapse">
79
      <ul class="nav navbar-nav">
80
        <li>
81
  <a href="../index.html">
82
    <span class="fas fa-home fa-lg"></span>
83
     
84
  </a>
85
</li>
86
<li>
87
  <a href="../reference/index.html">Reference</a>
88
</li>
89
<li class="dropdown">
90
  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
91
    Articles
92
     
93
    <span class="caret"></span>
94
  </a>
95
  <ul class="dropdown-menu" role="menu">
96
    <li>
97
      <a href="../articles/customisation.html">Using custom priors, likelihood, or movements in outbreaker2</a>
98
    </li>
99
    <li>
100
      <a href="../articles/introduction.html">Introduction to outbreaker2</a>
101
    </li>
102
    <li>
103
      <a href="../articles/overview.html">outbreaker2: package overview</a>
104
    </li>
105
    <li>
106
      <a href="../articles/Rcpp_API.html">outbreaker2: Rcpp API</a>
107
    </li>
108
  </ul>
109
</li>
110
<li>
111
  <a href="../news/index.html">Changelog</a>
112
</li>
113
      </ul>
114
      <ul class="nav navbar-nav navbar-right">
115
        
116
      </ul>
117
      
118
    </div><!--/.nav-collapse -->
119
  </div><!--/.container -->
120
</div><!--/.navbar -->
121
122
      
123
124
      </header>
125
126
<div class="row">
127
  <div class="col-md-9 contents">
128
    <div class="page-header">
129
      <h1>Articles</h1>
130
    </div>
131
132
    <div class="section ">
133
      <h3>All vignettes</h3>
134
      <p class="section-desc"></p>
135
136
      <dl>
137
        <dt><a href="customisation.html">Using custom priors, likelihood, or movements in outbreaker2</a></dt>
138
        <dd></dt>
139
        <dt><a href="introduction.html">Introduction to outbreaker2</a></dt>
140
        <dd></dt>
141
        <dt><a href="overview.html">outbreaker2: package overview</a></dt>
142
        <dd></dt>
143
        <dt><a href="Rcpp_API.html">outbreaker2: Rcpp API</a></dt>
144
        <dd></dt>
145
      </dl>
146
    </div>
147
  </div>
148
</div>
149
150
151
      <footer>
152
      <div class="copyright">
153
  <p>Developed by Thibaut Jombart, Finlay Campbell, Rich Fitzjohn.</p>
154
</div>
155
156
<div class="pkgdown">
157
  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
158
</div>
159
160
      </footer>
161
   </div>
162
163
  
164
165
166
  </body>
167
</html>
168
169