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b/R/bind_moves.R |
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## This function creates a named list of movement functions taking a single |
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## argument 'param'; all the rest (e.g. likelihood, prior, posterior functions, |
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## config, etc) is enclosed in the functions. |
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bind_moves <- function(moves = custom_moves(), config, data, |
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likelihoods, priors) { |
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out <- custom_moves(moves) |
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## Binding: |
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## Each function needs to go through binding separately, as custom functions |
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## for likelihoods and priors often correspond to the same argument in |
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## different functions. |
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## remove move$mu if disabled |
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if (!any(config$move_mu)) { |
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out$mu <- NULL |
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} else { |
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out$mu <- bind_to_function(out$mu, |
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data = data, |
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config = config, |
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custom_ll = likelihoods$genetic, |
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custom_prior = priors$mu |
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) |
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} |
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## remove move$pi if disabled |
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if (!any(config$move_pi)) { |
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out$pi <- NULL |
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} else { |
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out$pi <- bind_to_function(out$pi, |
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data = data, |
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config = config, |
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custom_ll = likelihoods$reporting, |
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custom_prior = priors$pi |
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) |
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} |
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## remove move$eps if disabled |
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if (!any(config$move_eps)) { |
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out$eps <- NULL |
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} else { |
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out$eps <- bind_to_function(out$eps, |
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data = data, |
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config = config, |
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custom_ll = likelihoods$contact, |
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custom_prior = priors$eps |
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) |
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} |
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## remove move$lambda if disabled |
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if (!any(config$move_lambda)) { |
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out$lambda <- NULL |
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} else { |
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out$lambda <- bind_to_function(out$lambda, |
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data = data, |
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config = config, |
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custom_ll = likelihoods$contact, |
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custom_prior = priors$lambda |
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) |
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} |
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## remove move$alpha if no ancestry can be moved |
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if (!any(config$move_alpha)) { |
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out$alpha <- NULL |
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} else { |
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out$alpha <- bind_to_function(out$alpha, |
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data = data, |
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list_custom_ll = likelihoods |
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) |
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} |
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## remove move$t_inf if disabled |
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if (!any(config$move_t_inf)) { |
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out$t_inf <- NULL |
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} else { |
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out$t_inf <- bind_to_function(out$t_inf, |
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data = data, |
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list_custom_ll = likelihoods |
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) |
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} |
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## remove swap if disabled |
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if (!any(config$move_swap_cases)) { |
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out$swap_cases <- NULL |
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} else { |
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out$swap_cases <- bind_to_function(out$swap_cases, |
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data = data, |
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list_custom_ll = likelihoods |
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) |
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} |
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## remove move$kappa if disabled |
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if (!any(config$move_kappa)) { |
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out$kappa <- NULL |
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} else { |
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out$kappa <- bind_to_function(out$kappa, |
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data = data, |
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config = config, |
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list_custom_ll = likelihoods |
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) |
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} |
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## perform binding for new unknown movements |
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known_moves <- names(custom_moves()) |
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new_moves <- !names(out) %in% known_moves |
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if (any(new_moves)) { |
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for (i in seq_along(out)) { |
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if (new_moves[i]) { |
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out[[i]] <- bind_to_function(out[[i]], |
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data = data, |
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config = config, |
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likelihoods = likelihoods, |
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priors = priors |
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) |
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} |
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} |
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} |
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## the output is a list of movement functions with enclosed objects ## |
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return(out) |
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} |
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