--- a +++ b/DESCRIPTION @@ -0,0 +1,56 @@ +Package: outbreaker2 +Version: 1.1.3 +Date: 2022-05-23 +Title: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic + and Genomic Data +Authors@R: c(person("Thibaut", "Jombart", + email = "thibautjombart@gmail.com", + role = c("aut")), + person("Finlay", "Campbell", + email = "finlaycampbell93@gmail.com", + role = c("aut", "cre")), + person("Rich", "Fitzjohn", + email = "r.fitzjohn@imperial.ac.uk", + role = c("aut")), + person("Gerry", "Tonkin-Hill", + email = "gqt20@cam.ac.uk", + role = c("ctb")), + person("Kristjan", "Eldjarn", + email = "kristjan@eldjarn.net", + role = c("ctb")), + person("Alexis", "Robert", + email = "alexis.robert@lshtm.ac.uk", + role = c("ctb"))) +Maintainer: Finlay Campbell <finlaycampbell93@gmail.com> +Description: Bayesian reconstruction of disease outbreaks using epidemiological + and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser + C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, + Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>. +License: MIT + file LICENSE +Suggests: + coda, + microbenchmark, + testthat, + knitr, + rmarkdown, + igraph, + epicontacts, + adegenet +Depends: + R (>= 3.0.0) +Imports: + utils, + methods, + stats, + grDevices, + Rcpp, + ape, + ggplot2, + magrittr, + visNetwork +LazyData: true +LinkingTo: Rcpp +Encoding: UTF-8 +RoxygenNote: 7.1.2 +SystemRequirements: C++11 +VignetteBuilder: knitr