|
a |
|
b/DESCRIPTION |
|
|
1 |
Package: outbreaker2 |
|
|
2 |
Version: 1.1.3 |
|
|
3 |
Date: 2022-05-23 |
|
|
4 |
Title: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic |
|
|
5 |
and Genomic Data |
|
|
6 |
Authors@R: c(person("Thibaut", "Jombart", |
|
|
7 |
email = "thibautjombart@gmail.com", |
|
|
8 |
role = c("aut")), |
|
|
9 |
person("Finlay", "Campbell", |
|
|
10 |
email = "finlaycampbell93@gmail.com", |
|
|
11 |
role = c("aut", "cre")), |
|
|
12 |
person("Rich", "Fitzjohn", |
|
|
13 |
email = "r.fitzjohn@imperial.ac.uk", |
|
|
14 |
role = c("aut")), |
|
|
15 |
person("Gerry", "Tonkin-Hill", |
|
|
16 |
email = "gqt20@cam.ac.uk", |
|
|
17 |
role = c("ctb")), |
|
|
18 |
person("Kristjan", "Eldjarn", |
|
|
19 |
email = "kristjan@eldjarn.net", |
|
|
20 |
role = c("ctb")), |
|
|
21 |
person("Alexis", "Robert", |
|
|
22 |
email = "alexis.robert@lshtm.ac.uk", |
|
|
23 |
role = c("ctb"))) |
|
|
24 |
Maintainer: Finlay Campbell <finlaycampbell93@gmail.com> |
|
|
25 |
Description: Bayesian reconstruction of disease outbreaks using epidemiological |
|
|
26 |
and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser |
|
|
27 |
C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, |
|
|
28 |
Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>. |
|
|
29 |
License: MIT + file LICENSE |
|
|
30 |
Suggests: |
|
|
31 |
coda, |
|
|
32 |
microbenchmark, |
|
|
33 |
testthat, |
|
|
34 |
knitr, |
|
|
35 |
rmarkdown, |
|
|
36 |
igraph, |
|
|
37 |
epicontacts, |
|
|
38 |
adegenet |
|
|
39 |
Depends: |
|
|
40 |
R (>= 3.0.0) |
|
|
41 |
Imports: |
|
|
42 |
utils, |
|
|
43 |
methods, |
|
|
44 |
stats, |
|
|
45 |
grDevices, |
|
|
46 |
Rcpp, |
|
|
47 |
ape, |
|
|
48 |
ggplot2, |
|
|
49 |
magrittr, |
|
|
50 |
visNetwork |
|
|
51 |
LazyData: true |
|
|
52 |
LinkingTo: Rcpp |
|
|
53 |
Encoding: UTF-8 |
|
|
54 |
RoxygenNote: 7.1.2 |
|
|
55 |
SystemRequirements: C++11 |
|
|
56 |
VignetteBuilder: knitr |