Log In Sign Up
Models:
Marco Lenoir
MarcoTheBlack/
neusomatic
0
Downloads: 1
Diff of /test/NeuSomatic_standalone.vcf [000000] .. [0a8e41]

Switch to unified view

a b/test/NeuSomatic_standalone.vcf 

  1
  
##fileformat=VCFv4.2





  
  

  2
  
##NeuSomatic Version=0.2.1





  
  

  3
  
##INFO=<ID=SCORE,Number=1,Type=Float,Description="Prediction probability score">





  
  

  4
  
##INFO=<ID=DP,Number=1,Type=Integer,Description="Read Depth in the tumor">





  
  

  5
  
##INFO=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count in the tumor">





  
  

  6
  
##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count in the tumor">





  
  

  7
  
##INFO=<ID=AF,Number=1,Type=Float,Description="Allele fractions of alternate alleles in the tumor">





  
  

  8
  
##FILTER=<ID=PASS,Description="Accept as a higher confidence somatic mutation calls with probability score value at least 0.7">





  
  

  9
  
##FILTER=<ID=LowQual,Description="Less confident somatic mutation calls with probability score value at least 0.4">





  
  

  10
  
##FILTER=<ID=REJECT,Description="Rejected as a confident somatic mutation with probability score value below 0.4">





  
  

  11
  
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">





  
  

  12
  
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth in the tumor">





  
  

  13
  
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count in the tumor">





  
  

  14
  
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count in the tumor">





  
  

  15
  
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allele fractions of alternate alleles in the tumor">





  
  

  16
  
#CHROM  POS ID  REF ALT QUAL    FILTER  INFO    FORMAT  SAMPLE





  
  

  17
  
22  21330787    .   C   T   33.0111 PASS    SCORE=0.9995;DP=396;RO=306;AO=88;AF=0.2234  GT:DP:RO:AO:AF  0/1:396:306:88:0.2234





  
  

  18
  
22  21332122    .   G   A   36.9903 PASS    SCORE=0.9998;DP=285;RO=223;AO=62;AF=0.2175  GT:DP:RO:AO:AF  0/1:285:223:62:0.2175





  
  

  19
  
22  21334924    .   G   C   12.9061 PASS    SCORE=0.9488;DP=106;RO=83;AO=23;AF=0.217    GT:DP:RO:AO:AF  0/1:106:83:23:0.217





  
  

  20
  
22  21335259    .   C   A   25.0876 PASS    SCORE=0.9969;DP=249;RO=200;AO=49;AF=0.1968  GT:DP:RO:AO:AF  0/1:249:200:49:0.1968





  
  

  21
  
22  21384516    .   C   T   32.2191 PASS    SCORE=0.9994;DP=95;RO=68;AO=27;AF=0.2842    GT:DP:RO:AO:AF  0/1:95:68:27:0.2842





  
  

  22
  
22  21982892    .   C   T   29.5872 PASS    SCORE=0.9989;DP=158;RO=113;AO=45;AF=0.2848  GT:DP:RO:AO:AF  0/1:158:113:45:0.2848





  
  

  23
  
22  21983260    .   A   G   35.2289 PASS    SCORE=0.9997;DP=118;RO=74;AO=44;AF=0.3729   GT:DP:RO:AO:AF  0/1:118:74:44:0.3729





  
  

  24
  
22  21989959    .   AAG A   39.9993 PASS    SCORE=0.9999;DP=139;RO=107;AO=32;AF=0.2302  GT:DP:RO:AO:AF  0/1:139:107:32:0.2302