added	.gitignore
added	00_preparation/00_jund_downloads.ipynb
added	00_preparation/01_cage_downloads.ipynb
added	00_preparation/02_deepsea_downloads.ipynb
added	01_jund_prediction/data_utils.py
added	01_jund_prediction/dna_only.py
added	01_jund_prediction/dnase_dna_model.py
added	01_jund_prediction/dnase_only.py
added	01_jund_prediction/model_utils.py
added	01_jund_prediction/plot_dnase_dna.py
added	01_jund_prediction/predicting_jund_binding.ipynb
added	02_deepsea_danq_prediction/deepsea_danq_experiments.ipynb
added	02_deepsea_danq_prediction/genomic_models.py
added	02_deepsea_danq_prediction/make_labels.R
added	02_deepsea_danq_prediction/run_genomics_model.py
added	03_cage_prediction/cage_prediction.py
added	03_cage_prediction/predicting_cage_tags.ipynb
added	LICENSE
added	README.md
added	extra/deepsea_train_train.bed
added	extra/deepsea_train_valid.bed
added	extra/narrowpeakfiles.txt
added	extra/test.bed
added	extra/urls.txt