janggu - Utilities for creating, fitting and evaluating models

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This section describes the interface and utilities to build

build and evaluate deep learning applications with janggu.

.. currentmodule:: janggu

.. automodule:: janggu

   :no-undoc-members:

.. autosummary::

   Janggu

   Janggu.create

   Janggu.create_by_name

   Janggu.fit

   Janggu.predict

   Janggu.evaluate

   input_attribution

Janggu Model

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.. currentmodule:: janggu

.. autoclass:: Janggu

   :members:

Input feature attribution

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.. autofunction:: input_attribution

Performance evaluation

----------------------

.. autosummary::

   Scorer.score

   Scorer.export

.. autoclass:: Scorer

   :members:

Performance score utilities

============================

.. autoclass:: ExportJson

.. autoclass:: ExportTsv

.. autoclass:: ExportBed

.. autoclass:: ExportBigwig

.. autoclass:: ExportScorePlot

Decorators for network construction

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.. autofunction:: inputlayer

.. autofunction:: outputdense

.. autofunction:: outputconv

Genomics-specific keras layers

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.. autoclass:: DnaConv2D

.. autoclass:: Complement

.. autoclass:: Reverse

.. autoclass:: LocalAveragePooling2D