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janggu - Utilities for creating, fitting and evaluating models





  
  

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==============================================================





  
  

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This section describes the interface and utilities to build





  
  

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build and evaluate deep learning applications with janggu.





  
  

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.. currentmodule:: janggu





  
  

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.. automodule:: janggu





  
  

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   :no-undoc-members:





  
  

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.. autosummary::





  
  

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   Janggu





  
  

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   Janggu.create





  
  

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   Janggu.create_by_name





  
  

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   Janggu.fit





  
  

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   Janggu.predict





  
  

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   Janggu.evaluate





  
  

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   input_attribution





  
  

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Janggu Model





  
  

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---------------





  
  

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.. currentmodule:: janggu





  
  

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.. autoclass:: Janggu





  
  

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   :members:





  
  

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Input feature attribution





  
  

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---------------------------





  
  

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.. autofunction:: input_attribution





  
  

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Performance evaluation





  
  

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----------------------





  
  

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.. autosummary::





  
  

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   Scorer.score





  
  

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   Scorer.export





  
  

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.. autoclass:: Scorer





  
  

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   :members:





  
  

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Performance score utilities





  
  

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============================





  
  

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.. autoclass:: ExportJson





  
  

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.. autoclass:: ExportTsv





  
  

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.. autoclass:: ExportBed





  
  

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.. autoclass:: ExportBigwig





  
  

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.. autoclass:: ExportScorePlot





  
  

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Decorators for network construction





  
  

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====================================





  
  

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.. autofunction:: inputlayer





  
  

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.. autofunction:: outputdense





  
  

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.. autofunction:: outputconv





  
  

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Genomics-specific keras layers





  
  

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==============================





  
  

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.. autoclass:: DnaConv2D





  
  

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.. autoclass:: Complement





  
  

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.. autoclass:: Reverse





  
  

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.. autoclass:: LocalAveragePooling2D