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+janggu.data - Genomics datasets for deep learning
+=========================================================
+
+.. currentmodule:: janggu.data
+
+.. autosummary::
+
+   Bioseq.create_from_seq
+   Bioseq.create_from_refgenome
+   Cover.create_from_bam
+   Cover.create_from_bigwig
+   Cover.create_from_bed
+   Cover.create_from_array
+   plotGenomeTrack
+   Track
+   HeatTrack
+   LineTrack
+   SeqTrack
+
+
+Main Dataset classes
+---------------------
+
+.. autosummary::
+   Dataset
+   Cover
+   Bioseq
+   Array
+   GenomicIndexer
+
+.. autoclass:: Dataset
+   :members: name, shape
+
+.. autoclass:: Cover
+   :members: create_from_bam, create_from_bigwig, create_from_bed, create_from_array
+
+.. autoclass:: Bioseq
+   :members: create_from_refgenome, create_from_seq
+
+.. autoclass:: Array
+
+.. autoclass:: GenomicIndexer
+   :members: create_from_file
+
+
+Dataset wrappers
+----------------
+
+Utilities for reshaping, data augmentation, NaN removal.
+
+.. autosummary::
+   ReduceDim
+   SqueezeDim
+   Transpose
+   NanToNumConverter
+   RandomOrientation
+   RandomSignalScale
+
+.. autoclass:: ReduceDim
+
+.. autoclass:: SqueezeDim
+
+.. autoclass:: Transpose
+
+.. autoclass:: NanToNumConverter
+
+.. autoclass:: RandomOrientation
+
+.. autoclass:: RandomSignalScale
+
+.. autoclass:: RandomShift
+
+
+Normalization and transformation
+--------------------------------
+
+.. autosummary::
+   LogTransform
+   PercentileTrimming
+   RegionLengthNormalization
+   ZScore
+   ZScoreLog
+   normalize_garray_tpm
+
+.. autoclass:: LogTransform
+
+.. autoclass:: PercentileTrimming
+
+.. autoclass:: RegionLengthNormalization
+
+.. autoclass:: ZScore
+
+.. autoclass:: ZScoreLog
+
+.. autofunction:: normalize_garray_tpm
+
+
+Visualization utilitites
+------------------------
+
+.. autofunction:: plotGenomeTrack
+
+.. autoclass:: Track
+
+.. autoclass:: HeatTrack
+
+.. autoclass:: LineTrack
+
+.. autoclass:: SeqTrack