==================

Command line tools

==================

:code:`janggu`

---------------------

The janggu app can be used to browse

through the results of one or more models using 

webbrowser of your choice.

Example usage::

   janggu -path <results-root> -port <PORT>

:code:`janggu-trim`

-------------------

janggu-trim can be used to trim the interval starts

and ends of a given BED/GFF file which is intended

for creating the ROI by a specified factor.

Trimming might circumvent undesired round effects when

using :code:`resolution>1` and :code:`store_whole_genome=True`

to handle covarage data with :code:`Cover`.

Therefore, we suggest to trim the ROIs that are used during

training and evaluation beforehand. For the sake of convenience,

we added the tool janggu-trim to do that.

Example usage::

   janggu-trim input.bed trimmed.bed -divby 50