fastai-genomic / Git / Commit [98867e]

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Commit [98867e] main

Initial commit

Authored by: MarcoTheBlack 2025-04-21

Browse code at this revision

Parent: [f1748c]

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added	.gitignore
added	LICENSE
added	README.md
added	data/ksen-sentences.pkl
added	data/models/encoder-3d
added	exp/nb_BacteriaClassifier.py
added	exp/nb_denoiser.py
added	faigen/__init__.py
added	faigen/data/__init__.py
added	faigen/data/alignment.py
added	faigen/data/sequence.py
added	faigen/version.py
added	ipynb/BacteriaClassifier.ipynb
added	ipynb/KlsAutoencoder.ipynb
added	ipynb/KlsAutoencoder.py
added	ipynb/Streptomyces,Bacillus,Vibrio,Streptococcus no plasmid.ipynb
added	ipynb/classifier-denoised.ipynb
added	ipynb/classifier.ipynb
added	ipynb/clustering 11-mer.ipynb
added	ipynb/denoiser.ipynb
added	ipynb/embedding 3d NCBI 2019-04-07.ipynb
added	ipynb/embedding 3d visualisation.ipynb
added	ipynb/fasta similarity.ipynb
added	ipynb/genome classifier.ipynb
added	ipynb/ksent.ipynb

.gitignore Diff Switch to side-by-side view

LICENSE Diff Switch to side-by-side view

README.md Diff Switch to side-by-side view

data/ksen-sentences.pkl

Binary file was added.

data/models/encoder-3d

Binary file was added.

exp/nb_BacteriaClassifier.py Diff Switch to side-by-side view

exp/nb_denoiser.py Diff Switch to side-by-side view

faigen/init.py Diff Switch to side-by-side view

faigen/data/init.py Diff Switch to side-by-side view

faigen/data/alignment.py Diff Switch to side-by-side view

faigen/data/sequence.py Diff Switch to side-by-side view

faigen/version.py Diff Switch to side-by-side view

ipynb/BacteriaClassifier.ipynb Diff Switch to side-by-side view

ipynb/KlsAutoencoder.ipynb Diff Switch to side-by-side view

ipynb/KlsAutoencoder.py Diff Switch to side-by-side view

ipynb/Streptomyces,Bacillus,Vibrio,Streptococcus no plasmid.ipynb Diff Switch to side-by-side view

ipynb/classifier-denoised.ipynb Diff Switch to side-by-side view

ipynb/classifier.ipynb Diff Switch to side-by-side view

ipynb/clustering 11-mer.ipynb Diff Switch to side-by-side view

ipynb/denoiser.ipynb Diff Switch to side-by-side view

ipynb/embedding 3d NCBI 2019-04-07.ipynb Diff Switch to side-by-side view

ipynb/embedding 3d visualisation.ipynb Diff Switch to side-by-side view

ipynb/fasta similarity.ipynb Diff Switch to side-by-side view

ipynb/genome classifier.ipynb Diff Switch to side-by-side view

ipynb/ksent.ipynb Diff Switch to side-by-side view

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