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| a | b/ipynb/genome classifier.ipynb | ||
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| 1 | { |
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| 2 | "cells": [ |
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| 3 | { |
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| 4 | "cell_type": "markdown", |
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| 5 | "metadata": {}, |
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| 6 | "source": [ |
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| 7 | "## basic classifier for Dna2Vec represenation\n", |
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| 8 | "\n", |
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| 9 | "Basic bacterial genome classification using Dna2Vec representation" |
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| 10 | ] |
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| 11 | }, |
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| 12 | { |
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| 13 | "cell_type": "code", |
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| 14 | "execution_count": 1, |
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| 15 | "metadata": {}, |
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| 16 | "outputs": [], |
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| 17 | "source": [ |
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| 18 | "%load_ext autoreload\n", |
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| 19 | "%autoreload 2" |
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| 20 | ] |
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| 21 | }, |
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| 22 | { |
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| 23 | "cell_type": "code", |
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| 24 | "execution_count": 37, |
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| 25 | "metadata": {}, |
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| 26 | "outputs": [], |
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| 27 | "source": [ |
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| 28 | "from faigen.genomic import sequence " |
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| 29 | ] |
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| 30 | }, |
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| 31 | { |
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| 32 | "cell_type": "code", |
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| 33 | "execution_count": 38, |
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| 34 | "metadata": {}, |
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| 35 | "outputs": [], |
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| 36 | "source": [ |
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| 37 | "import sys\n", |
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| 38 | "sys.path.append(\"..\")\n", |
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| 39 | "from faigen.data import sequence \n", |
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| 40 | "# from genomic import sequence\n", |
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| 41 | "from faigen.data.sequence import regex_filter, count_filter, Dna2VecDataBunch\n", |
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| 42 | "from functools import partial\n", |
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| 43 | "import pandas as pd\n", |
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| 44 | "import numpy as np\n", |
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| 45 | "from sklearn.decomposition import PCA\n", |
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| 46 | "from sklearn import manifold,neighbors\n", |
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| 47 | "from scipy.cluster.hierarchy import dendrogram, linkage \n", |
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| 48 | "from matplotlib import pyplot as plt\n", |
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| 49 | "import seaborn as sns; sns.set(color_codes=True)\n", |
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| 50 | "import plotly.plotly as py\n", |
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| 51 | "import plotly.graph_objs as go\n", |
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| 52 | "from fastai import *\n", |
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| 53 | "from fastai.data_block import *\n", |
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| 54 | "from fastai.basic_train import *\n", |
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| 55 | "from fastai.layers import *\n", |
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| 56 | "from fastai.metrics import *\n", |
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| 57 | "import torch.nn as nn\n", |
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| 58 | "import torch.nn.functional as F" |
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| 59 | ] |
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| 60 | }, |
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| 61 | { |
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| 62 | "cell_type": "code", |
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| 63 | "execution_count": null, |
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| 64 | "metadata": {}, |
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| 65 | "outputs": [], |
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| 66 | "source": [] |
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| 67 | }, |
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| 68 | { |
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| 69 | "cell_type": "markdown", |
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| 70 | "metadata": {}, |
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| 71 | "source": [ |
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| 72 | "### Load Data" |
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| 73 | ] |
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| 74 | }, |
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| 75 | { |
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| 76 | "cell_type": "code", |
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| 77 | "execution_count": 2, |
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| 78 | "metadata": {}, |
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| 79 | "outputs": [], |
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| 80 | "source": [ |
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| 81 | "from gensim.models import Word2Vec\n", |
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| 82 | "# word_vectors = Word2Vec.load_word2vec_format('/data/genomes/embeddings/dna2vec-20190612-1611-k10to10-100d-10c-4870Mbp-sliding-kPR.w2v') \n", |
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| 83 | "\n", |
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| 84 | "word_vectors = Word2Vec.load_word2vec_format('/data/genomes/embeddings/dna2vec-20190611-1940-k8to8-100d-10c-4870Mbp-sliding-LmP.w2v') \n", |
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| 85 | "\n" |
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| 86 | ] |
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| 87 | }, |
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| 88 | { |
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| 89 | "cell_type": "code", |
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| 90 | "execution_count": 5, |
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| 91 | "metadata": {}, |
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| 92 | "outputs": [ |
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| 93 | { |
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| 94 | "name": "stdout", |
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| 95 | "output_type": "stream", |
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| 96 | "text": [ |
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| 97 | "\n", |
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| 98 | " <class 'genomic.sequence.GSFileProcessor'>\n", |
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| 99 | "CPU times: user 792 ms, sys: 28 ms, total: 820 ms\n", |
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| 100 | "Wall time: 820 ms\n", |
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| 101 | "\n", |
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| 102 | " <class 'genomic.sequence.GSTokenizeProcessor'>\n", |
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| 103 | "CPU times: user 4.76 s, sys: 176 ms, total: 4.93 s\n", |
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| 104 | "Wall time: 4.93 s\n", |
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| 105 | "\n", |
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| 106 | " <class 'genomic.sequence.Dna2VecProcessor'>\n", |
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| 107 | "CPU times: user 3min 49s, sys: 166 ms, total: 3min 50s\n", |
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| 108 | "Wall time: 3min 50s\n" |
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| 109 | ] |
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| 110 | } |
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| 111 | ], |
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| 112 | "source": [ |
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| 113 | "filters=[partial(regex_filter, rx=\"Streptomyces|Bacillus|Vibrio|Streptococcus|Rhizobium|Staphylococcus\"),partial(regex_filter, rx=\"plasmid\", keep=False)]\n", |
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| 114 | "items = sequence.Dna2VecList.from_folder(\"/data/genomes/GenSeq_fastas/train\",filters=filters,agg=partial(np.mean, axis=0),n_cpus=7,emb=word_vectors)\n", |
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| 115 | "processors = [\n", |
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| 116 | " sequence.GSFileProcessor(),\n", |
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| 117 | " sequence.GSTokenizeProcessor(tokenizer=sequence.GSTokenizer(ngram=10, skip=0, n_cpus=7)),\n", |
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| 118 | " sequence.Dna2VecProcessor(emb=word_vectors)]\n", |
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| 119 | "for p in processors:\n", |
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| 120 | " print(\"\\n\", type(p))\n", |
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| 121 | " %time p.process(items)" |
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| 122 | ] |
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| 123 | }, |
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| 124 | { |
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| 125 | "cell_type": "code", |
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| 126 | "execution_count": 67, |
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| 127 | "metadata": {}, |
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| 128 | "outputs": [], |
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| 129 | "source": [ |
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| 130 | "bunch.sanity_check()" |
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| 131 | ] |
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| 132 | }, |
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| 133 | { |
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| 134 | "cell_type": "code", |
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| 135 | "execution_count": 39, |
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| 136 | "metadata": {}, |
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| 137 | "outputs": [ |
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| 138 | { |
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| 139 | "name": "stderr", |
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| 140 | "output_type": "stream", |
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| 141 | "text": [ |
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| 142 | "../faigen/data/sequence.py:362: FutureWarning:\n", |
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| 143 | "\n", |
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| 144 | "set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead\n", |
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| 145 | "\n" |
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| 146 | ] |
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| 147 | } |
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| 148 | ], |
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| 149 | "source": [ |
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| 150 | "DB=\"/data/genomes/GenSeq_fastas\"\n", |
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| 151 | "# DB='/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes'\n", |
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| 152 | "\n", |
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| 153 | "filters=[partial(regex_filter, rx=\"Bacillus\",keep=False),partial(regex_filter, rx=\"plasmid?\\s\", keep=False)] \n", |
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| 154 | "# partial(count_filter,num_fastas=(1,1), keep=1)]\n", |
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| 155 | "\n", |
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| 156 | "bunch = Dna2VecDataBunch.from_folder(DB,\n", |
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| 157 | " filters=filters,\n", |
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| 158 | " labeler=lambda x: x.split()[1],\n", |
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| 159 | " emb=word_vectors,ngram=8,skip=0,\n", |
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| 160 | " n_cpus=7,agg=partial(np.mean, axis=0), one_hot=True,bs=5)\n" |
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| 161 | ] |
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| 162 | }, |
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| 163 | { |
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| 164 | "cell_type": "code", |
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| 165 | "execution_count": 6, |
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| 166 | "metadata": { |
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| 167 | "scrolled": false |
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| 168 | }, |
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| 169 | "outputs": [ |
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| 170 | { |
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| 171 | "data": { |
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| 172 | "text/plain": [ |
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| 173 | "(tensor([[ 0.0645, -0.2872, -0.0565, -0.0035, 0.2611, -0.0581, -0.0974, 0.0791,\n", |
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| 174 | " -0.0033, 0.0354, -0.1201, 0.0797, 0.4888, -0.2327, 0.0385, 0.0012,\n", |
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| 175 | " 0.0010, -0.0173, -0.0215, -0.1770, 0.2252, 0.2270, 0.0441, 0.1425,\n", |
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| 176 | " 0.0319, -0.1449, -0.0564, 0.1623, -0.0063, 0.2955, 0.0319, -0.0049,\n", |
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| 177 | " 0.1545, 0.0335, -0.1812, -0.0363, -0.1245, 0.0646, -0.0411, -0.0247,\n", |
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| 178 | " -0.1640, 0.2380, -0.0977, -0.0708, -0.0517, -0.0311, 0.2524, 0.0503,\n", |
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| 179 | " -0.0663, -0.1152, 0.1973, 0.0954, -0.1255, -0.0057, 0.0548, 0.0498,\n", |
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| 180 | " 0.1748, 0.1425, 0.0037, 0.0763, 0.1242, 0.0503, 0.2337, -0.2296,\n", |
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| 181 | " -0.2063, -0.3261, -0.0014, -0.2051, -0.0520, -0.0805, 0.0730, -0.1465,\n", |
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| 182 | " 0.0566, 0.0843, 0.2293, 0.0049, 0.3408, -0.0223, 0.1707, 0.0475,\n", |
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| 183 | " 0.1269, -0.4170, -0.1300, -0.0997, -0.0961, -0.1751, 0.1074, -0.0183,\n", |
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| 184 | " -0.2679, 0.0532, 0.0268, -0.0753, 0.0468, -0.2390, 0.0514, -0.0319,\n", |
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| 185 | " -0.2176, -0.0088, 0.0298, -0.3192],\n", |
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| 186 | " [ 0.0712, -0.2975, -0.0803, 0.0288, 0.2837, -0.0378, -0.0861, 0.0702,\n", |
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| 187 | " -0.0012, 0.0477, -0.1239, 0.1127, 0.4886, -0.2318, 0.0631, 0.0211,\n", |
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| 188 | " -0.0150, 0.0043, -0.0256, -0.1680, 0.2110, 0.2094, 0.0509, 0.1543,\n", |
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| 189 | " 0.0257, -0.0992, -0.0656, 0.1697, -0.0521, 0.2733, 0.0303, -0.0418,\n", |
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| 190 | " 0.1426, 0.0527, -0.1708, -0.0463, -0.1259, 0.0844, -0.0497, -0.0356,\n", |
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| 191 | " -0.1558, 0.2374, -0.1124, -0.0725, -0.0580, -0.0022, 0.2462, 0.0385,\n", |
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| 192 | " -0.0774, -0.1119, 0.1945, 0.0943, -0.1330, -0.0070, 0.0447, 0.0490,\n", |
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| 193 | " 0.1366, 0.1082, -0.0173, 0.1339, 0.1397, 0.0679, 0.2450, -0.2511,\n", |
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| 194 | " -0.2057, -0.2910, -0.0458, -0.1792, -0.0591, -0.0754, 0.0427, -0.1430,\n", |
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| 195 | " 0.0283, 0.0675, 0.2322, 0.0567, 0.3495, -0.0160, 0.1579, 0.0464,\n", |
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| 196 | " 0.0981, -0.4520, -0.0777, -0.1147, -0.0929, -0.1862, 0.0988, 0.0298,\n", |
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| 197 | " -0.3066, 0.0399, 0.0548, -0.0368, 0.0470, -0.2289, 0.0894, -0.0029,\n", |
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| 198 | " -0.2413, -0.0667, 0.0545, -0.3136],\n", |
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| 199 | " [-0.0084, -0.3265, -0.0294, 0.0294, 0.2411, -0.0553, -0.0806, 0.0602,\n", |
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| 200 | " -0.0775, 0.0299, -0.1510, 0.0068, 0.4636, -0.2386, 0.0458, -0.0134,\n", |
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| 201 | " -0.0499, -0.0552, -0.0200, -0.2017, 0.2563, 0.1668, 0.0506, 0.1450,\n", |
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| 202 | " -0.0012, -0.1096, -0.0667, 0.1646, -0.0366, 0.2688, 0.0632, 0.0775,\n", |
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| 203 | " 0.1220, 0.0256, -0.2523, -0.0540, -0.1061, 0.0806, 0.0214, -0.0697,\n", |
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| 204 | " -0.1857, 0.1765, -0.1613, -0.1163, -0.0761, -0.0110, 0.2470, -0.0232,\n", |
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| 205 | " 0.0084, -0.0989, 0.2001, 0.0981, -0.0833, -0.0114, 0.0310, -0.0436,\n", |
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| 206 | " 0.1711, 0.1160, -0.0253, 0.0457, 0.1452, 0.0588, 0.1988, -0.1867,\n", |
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| 207 | " -0.1534, -0.2920, 0.0055, -0.1980, -0.0141, -0.0129, -0.0047, -0.1826,\n", |
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| 208 | " 0.1123, 0.0813, 0.1104, 0.0626, 0.3367, -0.0157, 0.2198, 0.0841,\n", |
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| 209 | " 0.0344, -0.4654, -0.0755, -0.1251, -0.0905, -0.1867, 0.0864, -0.0453,\n", |
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| 210 | " -0.2561, 0.0724, 0.0999, -0.0545, 0.0077, -0.2406, 0.0306, -0.0237,\n", |
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| 211 | " -0.2276, -0.0143, -0.0053, -0.3349],\n", |
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| 212 | " [ 0.2103, -0.2748, -0.0538, -0.0474, 0.2902, -0.0023, -0.1600, 0.0555,\n", |
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| 213 | " 0.0416, 0.0025, -0.1530, 0.2282, 0.5417, -0.1959, 0.0795, 0.0288,\n", |
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| 214 | " 0.0577, 0.0510, -0.0367, -0.1420, 0.1857, 0.3057, 0.0799, 0.0718,\n", |
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| 215 | " 0.0897, -0.2199, -0.0677, 0.1507, -0.0070, 0.3366, 0.0611, -0.0520,\n", |
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| 216 | " 0.2253, 0.0676, -0.0924, -0.0184, -0.0974, 0.0301, -0.1595, -0.0136,\n", |
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| 217 | " -0.1617, 0.2327, -0.0557, 0.0031, -0.0211, -0.0504, 0.2998, 0.0635,\n", |
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| 218 | " -0.1450, -0.1896, 0.1963, 0.0844, -0.1862, 0.0087, 0.0236, 0.1022,\n", |
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| 219 | " 0.1902, 0.1577, 0.0079, 0.1377, 0.1503, 0.0566, 0.2635, -0.2444,\n", |
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| 220 | " -0.2908, -0.3010, -0.0491, -0.1958, -0.0451, -0.1362, 0.1359, -0.0697,\n", |
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| 221 | " -0.0593, 0.1400, 0.3458, -0.0732, 0.3166, -0.0736, 0.1735, 0.0481,\n", |
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| 222 | " 0.1190, -0.3988, -0.1169, -0.0622, -0.0935, -0.2487, 0.1479, -0.0260,\n", |
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| 223 | " -0.3342, 0.0489, -0.0158, -0.0838, 0.0287, -0.2172, 0.1107, -0.0162,\n", |
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| 224 | " -0.1757, -0.0313, 0.0073, -0.2945],\n", |
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| 225 | " [ 0.1272, -0.2734, -0.0564, -0.0277, 0.2328, -0.0026, -0.1567, 0.0682,\n", |
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| 226 | " 0.0175, 0.0443, -0.1617, 0.1785, 0.5237, -0.2230, 0.0837, 0.0275,\n", |
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| 227 | " 0.0213, 0.0724, 0.0021, -0.1542, 0.2121, 0.2865, 0.0737, 0.1739,\n", |
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| 228 | " -0.0119, -0.1626, -0.0782, 0.1466, -0.0363, 0.3180, 0.0303, -0.0879,\n", |
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| 229 | " 0.2469, 0.0922, -0.1034, -0.0216, -0.0900, 0.1322, -0.0963, -0.0235,\n", |
||
| 230 | " -0.1319, 0.2522, -0.1000, -0.0714, -0.0631, -0.0223, 0.2559, 0.0455,\n", |
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| 231 | " -0.0818, -0.1525, 0.2487, 0.1280, -0.1466, -0.0244, 0.0443, 0.0686,\n", |
||
| 232 | " 0.1398, 0.1593, 0.0160, 0.1091, 0.1674, 0.0014, 0.2519, -0.2398,\n", |
||
| 233 | " -0.2721, -0.2807, -0.0060, -0.1470, -0.0988, -0.1420, 0.0491, -0.0656,\n", |
||
| 234 | " -0.0230, 0.0982, 0.3263, -0.0257, 0.3444, -0.0401, 0.1362, 0.0397,\n", |
||
| 235 | " 0.1767, -0.3997, -0.1219, -0.1069, -0.1228, -0.2008, 0.1172, -0.0093,\n", |
||
| 236 | " -0.3198, -0.0500, -0.0121, -0.0261, 0.0143, -0.2519, 0.1582, -0.0338,\n", |
||
| 237 | " -0.1813, 0.0265, 0.0027, -0.2820]]),\n", |
||
| 238 | " tensor([[0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 1., 0., 0.],\n", |
||
| 239 | " [0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 1.],\n", |
||
| 240 | " [0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 1., 0., 0.],\n", |
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| 241 | " [0., 0., 0., 0., 0., 0., 0., 0., 0., 1., 0., 0., 0., 0., 0., 0., 0.],\n", |
||
| 242 | " [0., 0., 0., 0., 0., 0., 0., 0., 0., 1., 0., 0., 0., 0., 0., 0., 0.]]))" |
||
| 243 | ] |
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| 244 | }, |
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| 245 | "execution_count": 6, |
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| 246 | "metadata": {}, |
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| 247 | "output_type": "execute_result" |
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| 248 | } |
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| 249 | ], |
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| 250 | "source": [ |
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| 251 | "bunch.one_batch()" |
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| 252 | ] |
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| 253 | }, |
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| 254 | { |
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| 255 | "cell_type": "code", |
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| 256 | "execution_count": 7, |
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| 257 | "metadata": {}, |
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| 258 | "outputs": [], |
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| 259 | "source": [ |
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| 260 | "\n", |
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| 261 | "class GenomeClassifier(nn.Module):\n", |
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| 262 | " def __init__(self):\n", |
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| 263 | " super(GenomeClassifier, self).__init__()\n", |
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| 264 | " self.l1 = nn.Linear(100, 100)\n", |
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| 265 | " self.linear_classifier = nn.Linear(100, bunch.train_dl.y.c)\n", |
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| 266 | "\n", |
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| 267 | " def forward(self, x):\n", |
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| 268 | " x = F.relu(self.l1(x))\n", |
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| 269 | " x = self.linear_classifier(x)\n", |
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| 270 | " return x" |
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| 271 | ] |
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| 272 | }, |
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| 273 | { |
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| 274 | "cell_type": "code", |
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| 275 | "execution_count": 12, |
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| 276 | "metadata": {}, |
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| 277 | "outputs": [], |
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| 278 | "source": [ |
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| 279 | "class BactClassifier(SequentialEx):\n", |
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| 280 | " pass" |
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| 281 | ] |
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| 282 | }, |
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| 283 | { |
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| 284 | "cell_type": "code", |
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| 285 | "execution_count": 19, |
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| 286 | "metadata": {}, |
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| 287 | "outputs": [], |
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| 288 | "source": [ |
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| 289 | "layers=[nn.Linear(100,100),nn.ReLU(),nn.Linear(100,17)]" |
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| 290 | ] |
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| 291 | }, |
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| 292 | { |
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| 293 | "cell_type": "code", |
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| 294 | "execution_count": 20, |
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| 295 | "metadata": {}, |
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| 296 | "outputs": [], |
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| 297 | "source": [ |
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| 298 | "bc = SequentialEx(*layers)" |
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| 299 | ] |
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| 300 | }, |
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| 301 | { |
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| 302 | "cell_type": "code", |
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| 303 | "execution_count": 21, |
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| 304 | "metadata": {}, |
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| 305 | "outputs": [ |
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| 306 | { |
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| 307 | "data": { |
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| 308 | "text/plain": [ |
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| 309 | "SequentialEx(\n", |
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| 310 | " (layers): ModuleList(\n", |
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| 311 | " (0): Linear(in_features=100, out_features=100, bias=True)\n", |
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| 312 | " (1): ReLU()\n", |
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| 313 | " (2): Linear(in_features=100, out_features=17, bias=True)\n", |
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| 314 | " )\n", |
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| 315 | ")" |
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| 316 | ] |
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| 317 | }, |
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| 318 | "execution_count": 21, |
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| 319 | "metadata": {}, |
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| 320 | "output_type": "execute_result" |
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| 321 | } |
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| 322 | ], |
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| 323 | "source": [ |
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| 324 | "bc" |
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| 325 | ] |
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| 326 | }, |
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| 327 | { |
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| 328 | "cell_type": "code", |
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| 329 | "execution_count": 25, |
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| 330 | "metadata": { |
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| 331 | "scrolled": true |
||
| 332 | }, |
||
| 333 | "outputs": [], |
||
| 334 | "source": [ |
||
| 335 | "learn = Learner(bunch, bc)" |
||
| 336 | ] |
||
| 337 | }, |
||
| 338 | { |
||
| 339 | "cell_type": "code", |
||
| 340 | "execution_count": 26, |
||
| 341 | "metadata": {}, |
||
| 342 | "outputs": [ |
||
| 343 | { |
||
| 344 | "data": { |
||
| 345 | "text/html": [], |
||
| 346 | "text/plain": [ |
||
| 347 | "<IPython.core.display.HTML object>" |
||
| 348 | ] |
||
| 349 | }, |
||
| 350 | "metadata": {}, |
||
| 351 | "output_type": "display_data" |
||
| 352 | }, |
||
| 353 | { |
||
| 354 | "name": "stdout", |
||
| 355 | "output_type": "stream", |
||
| 356 | "text": [ |
||
| 357 | "LR Finder is complete, type {learner_name}.recorder.plot() to see the graph.\n" |
||
| 358 | ] |
||
| 359 | } |
||
| 360 | ], |
||
| 361 | "source": [ |
||
| 362 | "learn.lr_find()" |
||
| 363 | ] |
||
| 364 | }, |
||
| 365 | { |
||
| 366 | "cell_type": "code", |
||
| 367 | "execution_count": 27, |
||
| 368 | "metadata": {}, |
||
| 369 | "outputs": [ |
||
| 370 | { |
||
| 371 | "data": { |
||
| 372 | "image/png": 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\n", |
||
| 373 | "text/plain": [ |
||
| 374 | "<Figure size 432x288 with 1 Axes>" |
||
| 375 | ] |
||
| 376 | }, |
||
| 377 | "metadata": {}, |
||
| 378 | "output_type": "display_data" |
||
| 379 | } |
||
| 380 | ], |
||
| 381 | "source": [ |
||
| 382 | "learn.recorder.plot()" |
||
| 383 | ] |
||
| 384 | }, |
||
| 385 | { |
||
| 386 | "cell_type": "code", |
||
| 387 | "execution_count": 28, |
||
| 388 | "metadata": {}, |
||
| 389 | "outputs": [ |
||
| 390 | { |
||
| 391 | "data": { |
||
| 392 | "text/html": [ |
||
| 393 | "\n", |
||
| 394 | " <div>\n", |
||
| 395 | " <style>\n", |
||
| 396 | " /* Turns off some styling */\n", |
||
| 397 | " progress {\n", |
||
| 398 | " /* gets rid of default border in Firefox and Opera. */\n", |
||
| 399 | " border: none;\n", |
||
| 400 | " /* Needs to be in here for Safari polyfill so background images work as expected. */\n", |
||
| 401 | " background-size: auto;\n", |
||
| 402 | " }\n", |
||
| 403 | " .progress-bar-interrupted, .progress-bar-interrupted::-webkit-progress-bar {\n", |
||
| 404 | " background: #F44336;\n", |
||
| 405 | " }\n", |
||
| 406 | " </style>\n", |
||
| 407 | " <progress value='0' class='' max='1', style='width:300px; height:20px; vertical-align: middle;'></progress>\n", |
||
| 408 | " 0.00% [0/1 00:00<00:00]\n", |
||
| 409 | " </div>\n", |
||
| 410 | " \n", |
||
| 411 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 412 | " <thead>\n", |
||
| 413 | " <tr style=\"text-align: left;\">\n", |
||
| 414 | " <th>epoch</th>\n", |
||
| 415 | " <th>train_loss</th>\n", |
||
| 416 | " <th>valid_loss</th>\n", |
||
| 417 | " <th>time</th>\n", |
||
| 418 | " </tr>\n", |
||
| 419 | " </thead>\n", |
||
| 420 | " <tbody>\n", |
||
| 421 | " </tbody>\n", |
||
| 422 | "</table><p>\n", |
||
| 423 | "\n", |
||
| 424 | " <div>\n", |
||
| 425 | " <style>\n", |
||
| 426 | " /* Turns off some styling */\n", |
||
| 427 | " progress {\n", |
||
| 428 | " /* gets rid of default border in Firefox and Opera. */\n", |
||
| 429 | " border: none;\n", |
||
| 430 | " /* Needs to be in here for Safari polyfill so background images work as expected. */\n", |
||
| 431 | " background-size: auto;\n", |
||
| 432 | " }\n", |
||
| 433 | " .progress-bar-interrupted, .progress-bar-interrupted::-webkit-progress-bar {\n", |
||
| 434 | " background: #F44336;\n", |
||
| 435 | " }\n", |
||
| 436 | " </style>\n", |
||
| 437 | " <progress value='0' class='progress-bar-interrupted' max='154', style='width:300px; height:20px; vertical-align: middle;'></progress>\n", |
||
| 438 | " Interrupted\n", |
||
| 439 | " </div>\n", |
||
| 440 | " " |
||
| 441 | ], |
||
| 442 | "text/plain": [ |
||
| 443 | "<IPython.core.display.HTML object>" |
||
| 444 | ] |
||
| 445 | }, |
||
| 446 | "metadata": {}, |
||
| 447 | "output_type": "display_data" |
||
| 448 | }, |
||
| 449 | { |
||
| 450 | "ename": "IndexError", |
||
| 451 | "evalue": "Traceback (most recent call last):\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/torch/utils/data/_utils/worker.py\", line 99, in _worker_loop\n samples = collate_fn([dataset[i] for i in batch_indices])\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/torch/utils/data/_utils/worker.py\", line 99, in <listcomp>\n samples = collate_fn([dataset[i] for i in batch_indices])\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/data_block.py\", line 636, in __getitem__\n if self.item is None: x,y = self.x[idxs],self.y[idxs]\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/data_block.py\", line 109, in __getitem__\n if isinstance(idxs, Integral): return self.get(idxs)\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/data_block.py\", line 410, in get\n o = self.items[i]\nIndexError: index 17 is out of bounds for axis 0 with size 17\n", |
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| 452 | "output_type": "error", |
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| 453 | "traceback": [ |
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| 454 | "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", |
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| 455 | "\u001b[0;31mIndexError\u001b[0m Traceback (most recent call last)", |
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| 456 | "\u001b[0;32m<ipython-input-28-8587f3539821>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mlearn\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mfit\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", |
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| 457 | "\u001b[0;32m~/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/basic_train.py\u001b[0m in \u001b[0;36mfit\u001b[0;34m(self, epochs, lr, wd, callbacks)\u001b[0m\n\u001b[1;32m 197\u001b[0m \u001b[0mcallbacks\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0mcb\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mcb\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mcallback_fns\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0mlistify\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdefaults\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mextra_callback_fns\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0mlistify\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mcallbacks\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 198\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mdefaults\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mextra_callbacks\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mcallbacks\u001b[0m \u001b[0;34m+=\u001b[0m \u001b[0mdefaults\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mextra_callbacks\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 199\u001b[0;31m \u001b[0mfit\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mepochs\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mmetrics\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mmetrics\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcallbacks\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mcallbacks\u001b[0m\u001b[0;34m+\u001b[0m\u001b[0mcallbacks\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 200\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 201\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0mcreate_opt\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mlr\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0mFloats\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mwd\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0mFloats\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;36m0.\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m->\u001b[0m\u001b[0;32mNone\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 458 | "\u001b[0;32m~/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/basic_train.py\u001b[0m in \u001b[0;36mfit\u001b[0;34m(epochs, learn, callbacks, metrics)\u001b[0m\n\u001b[1;32m 104\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0mcb_handler\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mskip_validate\u001b[0m \u001b[0;32mand\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0mlearn\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdata\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mempty_val\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 105\u001b[0m val_loss = validate(learn.model, learn.data.valid_dl, loss_func=learn.loss_func,\n\u001b[0;32m--> 106\u001b[0;31m cb_handler=cb_handler, pbar=pbar)\n\u001b[0m\u001b[1;32m 107\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mval_loss\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mNone\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 108\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mcb_handler\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mon_epoch_end\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mval_loss\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0;32mbreak\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 459 | "\u001b[0;32m~/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/basic_train.py\u001b[0m in \u001b[0;36mvalidate\u001b[0;34m(model, dl, loss_func, cb_handler, pbar, average, n_batch)\u001b[0m\n\u001b[1;32m 55\u001b[0m \u001b[0mval_losses\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0mnums\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 56\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mcb_handler\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mcb_handler\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mset_dl\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdl\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 57\u001b[0;31m \u001b[0;32mfor\u001b[0m \u001b[0mxb\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0myb\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mprogress_bar\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdl\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mparent\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mpbar\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mleave\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mpbar\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 58\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mcb_handler\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mxb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0myb\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mcb_handler\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mon_batch_begin\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mxb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0myb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mtrain\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mFalse\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 59\u001b[0m \u001b[0mval_loss\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mloss_batch\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mmodel\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mxb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0myb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mloss_func\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcb_handler\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mcb_handler\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 460 | "\u001b[0;32m~/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastprogress/fastprogress.py\u001b[0m in \u001b[0;36m__iter__\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 70\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mupdate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 71\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 72\u001b[0;31m \u001b[0;32mfor\u001b[0m \u001b[0mi\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0mo\u001b[0m \u001b[0;32min\u001b[0m \u001b[0menumerate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_gen\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 73\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mi\u001b[0m \u001b[0;34m>=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtotal\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0;32mbreak\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 74\u001b[0m \u001b[0;32myield\u001b[0m \u001b[0mo\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 461 | "\u001b[0;32m~/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/basic_data.py\u001b[0m in \u001b[0;36m__iter__\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 73\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0m__iter__\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 74\u001b[0m \u001b[0;34m\"Process and returns items from `DataLoader`.\"\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 75\u001b[0;31m \u001b[0;32mfor\u001b[0m \u001b[0mb\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdl\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0;32myield\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mproc_batch\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mb\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 76\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 77\u001b[0m \u001b[0;34m@\u001b[0m\u001b[0mclassmethod\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 462 | "\u001b[0;32m~/anaconda3/envs/bio-2/lib/python3.6/site-packages/torch/utils/data/dataloader.py\u001b[0m in \u001b[0;36m__next__\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 566\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrcvd_idx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mreorder_dict\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 567\u001b[0m \u001b[0mbatch\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mreorder_dict\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mpop\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrcvd_idx\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 568\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_process_next_batch\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mbatch\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 569\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 570\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mbatches_outstanding\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;36m0\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 463 | "\u001b[0;32m~/anaconda3/envs/bio-2/lib/python3.6/site-packages/torch/utils/data/dataloader.py\u001b[0m in \u001b[0;36m_process_next_batch\u001b[0;34m(self, batch)\u001b[0m\n\u001b[1;32m 606\u001b[0m \u001b[0;32mraise\u001b[0m \u001b[0mException\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"KeyError:\"\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0mbatch\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_msg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 607\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 608\u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mbatch\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_type\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mbatch\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_msg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 609\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mbatch\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 610\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 464 | "\u001b[0;31mIndexError\u001b[0m: Traceback (most recent call last):\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/torch/utils/data/_utils/worker.py\", line 99, in _worker_loop\n samples = collate_fn([dataset[i] for i in batch_indices])\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/torch/utils/data/_utils/worker.py\", line 99, in <listcomp>\n samples = collate_fn([dataset[i] for i in batch_indices])\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/data_block.py\", line 636, in __getitem__\n if self.item is None: x,y = self.x[idxs],self.y[idxs]\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/data_block.py\", line 109, in __getitem__\n if isinstance(idxs, Integral): return self.get(idxs)\n File \"/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/fastai/data_block.py\", line 410, in get\n o = self.items[i]\nIndexError: index 17 is out of bounds for axis 0 with size 17\n" |
||
| 465 | ] |
||
| 466 | } |
||
| 467 | ], |
||
| 468 | "source": [ |
||
| 469 | "learn.fit(1)" |
||
| 470 | ] |
||
| 471 | }, |
||
| 472 | { |
||
| 473 | "cell_type": "code", |
||
| 474 | "execution_count": null, |
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| 475 | "metadata": {}, |
||
| 476 | "outputs": [ |
||
| 477 | { |
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| 478 | "name": "stdout", |
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| 479 | "output_type": "stream", |
||
| 480 | "text": [ |
||
| 481 | "> \u001b[0;32m/home/serge/anaconda3/envs/bio-2/lib/python3.6/site-packages/torch/utils/data/dataloader.py\u001b[0m(608)\u001b[0;36m_process_next_batch\u001b[0;34m()\u001b[0m\n", |
||
| 482 | "\u001b[0;32m 606 \u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mException\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"KeyError:\"\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0mbatch\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_msg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 483 | "\u001b[0m\u001b[0;32m 607 \u001b[0;31m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
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| 484 | "\u001b[0m\u001b[0;32m--> 608 \u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mbatch\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_type\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mbatch\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_msg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
||
| 485 | "\u001b[0m\u001b[0;32m 609 \u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mbatch\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", |
||
| 486 | "\u001b[0m\u001b[0;32m 610 \u001b[0;31m\u001b[0;34m\u001b[0m\u001b[0m\n", |
||
| 487 | "\u001b[0m\n", |
||
| 488 | "ipdb> batch\n", |
||
| 489 | "<torch.utils.data._utils.ExceptionWrapper object at 0x7ff4d40b8b38>\n" |
||
| 490 | ] |
||
| 491 | } |
||
| 492 | ], |
||
| 493 | "source": [ |
||
| 494 | "%debug" |
||
| 495 | ] |
||
| 496 | }, |
||
| 497 | { |
||
| 498 | "cell_type": "code", |
||
| 499 | "execution_count": 62, |
||
| 500 | "metadata": { |
||
| 501 | "scrolled": true |
||
| 502 | }, |
||
| 503 | "outputs": [ |
||
| 504 | { |
||
| 505 | "data": { |
||
| 506 | "text/html": [ |
||
| 507 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 508 | " <thead>\n", |
||
| 509 | " <tr style=\"text-align: left;\">\n", |
||
| 510 | " <th>epoch</th>\n", |
||
| 511 | " <th>train_loss</th>\n", |
||
| 512 | " <th>valid_loss</th>\n", |
||
| 513 | " <th>accuracy</th>\n", |
||
| 514 | " <th>time</th>\n", |
||
| 515 | " </tr>\n", |
||
| 516 | " </thead>\n", |
||
| 517 | " <tbody>\n", |
||
| 518 | " <tr>\n", |
||
| 519 | " <td>0</td>\n", |
||
| 520 | " <td>1.999583</td>\n", |
||
| 521 | " <td>2.891428</td>\n", |
||
| 522 | " <td>0.076797</td>\n", |
||
| 523 | " <td>00:00</td>\n", |
||
| 524 | " </tr>\n", |
||
| 525 | " <tr>\n", |
||
| 526 | " <td>1</td>\n", |
||
| 527 | " <td>1.996683</td>\n", |
||
| 528 | " <td>2.909333</td>\n", |
||
| 529 | " <td>0.076797</td>\n", |
||
| 530 | " <td>00:00</td>\n", |
||
| 531 | " </tr>\n", |
||
| 532 | " <tr>\n", |
||
| 533 | " <td>2</td>\n", |
||
| 534 | " <td>1.993628</td>\n", |
||
| 535 | " <td>2.928375</td>\n", |
||
| 536 | " <td>0.071895</td>\n", |
||
| 537 | " <td>00:00</td>\n", |
||
| 538 | " </tr>\n", |
||
| 539 | " <tr>\n", |
||
| 540 | " <td>3</td>\n", |
||
| 541 | " <td>1.988448</td>\n", |
||
| 542 | " <td>2.976008</td>\n", |
||
| 543 | " <td>0.096405</td>\n", |
||
| 544 | " <td>00:00</td>\n", |
||
| 545 | " </tr>\n", |
||
| 546 | " <tr>\n", |
||
| 547 | " <td>4</td>\n", |
||
| 548 | " <td>1.975731</td>\n", |
||
| 549 | " <td>2.991736</td>\n", |
||
| 550 | " <td>0.078431</td>\n", |
||
| 551 | " <td>00:00</td>\n", |
||
| 552 | " </tr>\n", |
||
| 553 | " <tr>\n", |
||
| 554 | " <td>5</td>\n", |
||
| 555 | " <td>1.962745</td>\n", |
||
| 556 | " <td>3.063164</td>\n", |
||
| 557 | " <td>0.099673</td>\n", |
||
| 558 | " <td>00:00</td>\n", |
||
| 559 | " </tr>\n", |
||
| 560 | " <tr>\n", |
||
| 561 | " <td>6</td>\n", |
||
| 562 | " <td>1.937906</td>\n", |
||
| 563 | " <td>3.158804</td>\n", |
||
| 564 | " <td>0.102941</td>\n", |
||
| 565 | " <td>00:00</td>\n", |
||
| 566 | " </tr>\n", |
||
| 567 | " <tr>\n", |
||
| 568 | " <td>7</td>\n", |
||
| 569 | " <td>1.915476</td>\n", |
||
| 570 | " <td>3.222555</td>\n", |
||
| 571 | " <td>0.120915</td>\n", |
||
| 572 | " <td>00:00</td>\n", |
||
| 573 | " </tr>\n", |
||
| 574 | " <tr>\n", |
||
| 575 | " <td>8</td>\n", |
||
| 576 | " <td>1.889667</td>\n", |
||
| 577 | " <td>3.251005</td>\n", |
||
| 578 | " <td>0.101307</td>\n", |
||
| 579 | " <td>00:00</td>\n", |
||
| 580 | " </tr>\n", |
||
| 581 | " <tr>\n", |
||
| 582 | " <td>9</td>\n", |
||
| 583 | " <td>1.861332</td>\n", |
||
| 584 | " <td>3.390323</td>\n", |
||
| 585 | " <td>0.106209</td>\n", |
||
| 586 | " <td>00:00</td>\n", |
||
| 587 | " </tr>\n", |
||
| 588 | " <tr>\n", |
||
| 589 | " <td>10</td>\n", |
||
| 590 | " <td>1.833662</td>\n", |
||
| 591 | " <td>3.394011</td>\n", |
||
| 592 | " <td>0.081699</td>\n", |
||
| 593 | " <td>00:00</td>\n", |
||
| 594 | " </tr>\n", |
||
| 595 | " <tr>\n", |
||
| 596 | " <td>11</td>\n", |
||
| 597 | " <td>1.812667</td>\n", |
||
| 598 | " <td>3.366220</td>\n", |
||
| 599 | " <td>0.104575</td>\n", |
||
| 600 | " <td>00:00</td>\n", |
||
| 601 | " </tr>\n", |
||
| 602 | " <tr>\n", |
||
| 603 | " <td>12</td>\n", |
||
| 604 | " <td>1.785382</td>\n", |
||
| 605 | " <td>3.465658</td>\n", |
||
| 606 | " <td>0.088235</td>\n", |
||
| 607 | " <td>00:00</td>\n", |
||
| 608 | " </tr>\n", |
||
| 609 | " <tr>\n", |
||
| 610 | " <td>13</td>\n", |
||
| 611 | " <td>1.761000</td>\n", |
||
| 612 | " <td>3.564012</td>\n", |
||
| 613 | " <td>0.089869</td>\n", |
||
| 614 | " <td>00:00</td>\n", |
||
| 615 | " </tr>\n", |
||
| 616 | " <tr>\n", |
||
| 617 | " <td>14</td>\n", |
||
| 618 | " <td>1.740894</td>\n", |
||
| 619 | " <td>3.674994</td>\n", |
||
| 620 | " <td>0.104575</td>\n", |
||
| 621 | " <td>00:00</td>\n", |
||
| 622 | " </tr>\n", |
||
| 623 | " <tr>\n", |
||
| 624 | " <td>15</td>\n", |
||
| 625 | " <td>1.721406</td>\n", |
||
| 626 | " <td>3.705786</td>\n", |
||
| 627 | " <td>0.068627</td>\n", |
||
| 628 | " <td>00:00</td>\n", |
||
| 629 | " </tr>\n", |
||
| 630 | " <tr>\n", |
||
| 631 | " <td>16</td>\n", |
||
| 632 | " <td>1.700805</td>\n", |
||
| 633 | " <td>3.702142</td>\n", |
||
| 634 | " <td>0.066993</td>\n", |
||
| 635 | " <td>00:00</td>\n", |
||
| 636 | " </tr>\n", |
||
| 637 | " <tr>\n", |
||
| 638 | " <td>17</td>\n", |
||
| 639 | " <td>1.684734</td>\n", |
||
| 640 | " <td>3.788021</td>\n", |
||
| 641 | " <td>0.066993</td>\n", |
||
| 642 | " <td>00:00</td>\n", |
||
| 643 | " </tr>\n", |
||
| 644 | " <tr>\n", |
||
| 645 | " <td>18</td>\n", |
||
| 646 | " <td>1.674555</td>\n", |
||
| 647 | " <td>3.792717</td>\n", |
||
| 648 | " <td>0.070261</td>\n", |
||
| 649 | " <td>00:00</td>\n", |
||
| 650 | " </tr>\n", |
||
| 651 | " <tr>\n", |
||
| 652 | " <td>19</td>\n", |
||
| 653 | " <td>1.664761</td>\n", |
||
| 654 | " <td>3.812120</td>\n", |
||
| 655 | " <td>0.083333</td>\n", |
||
| 656 | " <td>00:00</td>\n", |
||
| 657 | " </tr>\n", |
||
| 658 | " <tr>\n", |
||
| 659 | " <td>20</td>\n", |
||
| 660 | " <td>1.652747</td>\n", |
||
| 661 | " <td>3.813709</td>\n", |
||
| 662 | " <td>0.070261</td>\n", |
||
| 663 | " <td>00:00</td>\n", |
||
| 664 | " </tr>\n", |
||
| 665 | " <tr>\n", |
||
| 666 | " <td>21</td>\n", |
||
| 667 | " <td>1.646771</td>\n", |
||
| 668 | " <td>3.840080</td>\n", |
||
| 669 | " <td>0.063725</td>\n", |
||
| 670 | " <td>00:00</td>\n", |
||
| 671 | " </tr>\n", |
||
| 672 | " <tr>\n", |
||
| 673 | " <td>22</td>\n", |
||
| 674 | " <td>1.643901</td>\n", |
||
| 675 | " <td>3.840845</td>\n", |
||
| 676 | " <td>0.066993</td>\n", |
||
| 677 | " <td>00:00</td>\n", |
||
| 678 | " </tr>\n", |
||
| 679 | " <tr>\n", |
||
| 680 | " <td>23</td>\n", |
||
| 681 | " <td>1.641238</td>\n", |
||
| 682 | " <td>3.841465</td>\n", |
||
| 683 | " <td>0.066993</td>\n", |
||
| 684 | " <td>00:00</td>\n", |
||
| 685 | " </tr>\n", |
||
| 686 | " <tr>\n", |
||
| 687 | " <td>24</td>\n", |
||
| 688 | " <td>1.643271</td>\n", |
||
| 689 | " <td>3.844751</td>\n", |
||
| 690 | " <td>0.065359</td>\n", |
||
| 691 | " <td>00:00</td>\n", |
||
| 692 | " </tr>\n", |
||
| 693 | " </tbody>\n", |
||
| 694 | "</table>" |
||
| 695 | ], |
||
| 696 | "text/plain": [ |
||
| 697 | "<IPython.core.display.HTML object>" |
||
| 698 | ] |
||
| 699 | }, |
||
| 700 | "metadata": {}, |
||
| 701 | "output_type": "display_data" |
||
| 702 | } |
||
| 703 | ], |
||
| 704 | "source": [ |
||
| 705 | "learn.fit_one_cycle(25)" |
||
| 706 | ] |
||
| 707 | }, |
||
| 708 | { |
||
| 709 | "cell_type": "code", |
||
| 710 | "execution_count": 9, |
||
| 711 | "metadata": {}, |
||
| 712 | "outputs": [ |
||
| 713 | { |
||
| 714 | "name": "stdout", |
||
| 715 | "output_type": "stream", |
||
| 716 | "text": [ |
||
| 717 | "CPU times: user 42min 11s, sys: 8min 41s, total: 50min 52s\n", |
||
| 718 | "Wall time: 1h 25min 43s\n" |
||
| 719 | ] |
||
| 720 | } |
||
| 721 | ], |
||
| 722 | "source": [ |
||
| 723 | "processors = [\n", |
||
| 724 | " sequence.GSFileProcessor(),\n", |
||
| 725 | " sequence.GSTokenizeProcessor(tokenizer=sequence.GSTokenizer(ngram=8, skip=0, n_cpus=4)),\n", |
||
| 726 | " sequence.Dna2VecProcessor()]\n", |
||
| 727 | "%time for p in processors: p.process(data)" |
||
| 728 | ] |
||
| 729 | }, |
||
| 730 | { |
||
| 731 | "cell_type": "code", |
||
| 732 | "execution_count": 10, |
||
| 733 | "metadata": {}, |
||
| 734 | "outputs": [ |
||
| 735 | { |
||
| 736 | "data": { |
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| 737 | "text/plain": [ |
||
| 738 | "1686" |
||
| 739 | ] |
||
| 740 | }, |
||
| 741 | "execution_count": 10, |
||
| 742 | "metadata": {}, |
||
| 743 | "output_type": "execute_result" |
||
| 744 | } |
||
| 745 | ], |
||
| 746 | "source": [ |
||
| 747 | "len(data.items)" |
||
| 748 | ] |
||
| 749 | }, |
||
| 750 | { |
||
| 751 | "cell_type": "markdown", |
||
| 752 | "metadata": {}, |
||
| 753 | "source": [ |
||
| 754 | "### Genome vectors" |
||
| 755 | ] |
||
| 756 | }, |
||
| 757 | { |
||
| 758 | "cell_type": "code", |
||
| 759 | "execution_count": 11, |
||
| 760 | "metadata": {}, |
||
| 761 | "outputs": [ |
||
| 762 | { |
||
| 763 | "data": { |
||
| 764 | "text/plain": [ |
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| 765 | "[array([-10600.021 , 95022.27 , -4546.29 , -28514.387 , ..., -29253.547 , -42794.895 , -26871.03 , -7630.3984],\n", |
||
| 766 | " dtype=float32),\n", |
||
| 767 | " array([ -9848.35 , 132596.69 , -7269.2188, -46002.242 , ..., -16791.951 , -45528.703 , -51696.32 , -16984.848 ],\n", |
||
| 768 | " dtype=float32),\n", |
||
| 769 | " array([-11893.81 , 148440.22 , -8725.728, -52156.43 , ..., -19914.074, -50862.883, -56499.875, -17946.658],\n", |
||
| 770 | " dtype=float32),\n", |
||
| 771 | " array([-18210.059, 117143.05 , -11808.324, -37285.65 , ..., -43233.8 , -61256.727, -33373.516, -5143.087],\n", |
||
| 772 | " dtype=float32),\n", |
||
| 773 | " array([-17936.713, 114599.05 , -10966.08 , -35446.773, ..., -41979.465, -59523.035, -32904.266, -5278.633],\n", |
||
| 774 | " dtype=float32),\n", |
||
| 775 | " array([-17462.723 , 114580.625 , -11426.668 , -36419.715 , ..., -42048.332 , -59268.53 , -32817.168 , -5567.8833],\n", |
||
| 776 | " dtype=float32),\n", |
||
| 777 | " array([-18008.34 , 114250.88 , -11187.709, -35736.53 , ..., -41940.695, -59488.145, -32739.904, -5188.623],\n", |
||
| 778 | " dtype=float32),\n", |
||
| 779 | " array([ -4641.001 , 117018.06 , 5746.5435, -33752.27 , ..., -26746.936 , -48268.594 , -36699.223 , -18120.742 ],\n", |
||
| 780 | " dtype=float32),\n", |
||
| 781 | " array([-18145.646 , 114474.57 , -11029.391 , -35699.938 , ..., -42002.11 , -59545.543 , -32814.406 , -5445.6836],\n", |
||
| 782 | " dtype=float32),\n", |
||
| 783 | " array([-18055.822, 114735.836, -11256.009, -35862.2 , ..., -41732.53 , -59828.96 , -32572.646, -4784.695],\n", |
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| 784 | " dtype=float32),\n", |
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| 785 | " array([-11969.296, 155607.22 , -9093.506, -54698.33 , ..., -21078.47 , -52871.582, -58891.44 , -19207.371],\n", |
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
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||
| 1920 | " dtype=float32),\n", |
||
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||
| 1922 | " dtype=float32),\n", |
||
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||
| 1924 | " dtype=float32),\n", |
||
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||
| 1926 | " dtype=float32),\n", |
||
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||
| 1928 | " dtype=float32),\n", |
||
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||
| 1930 | " dtype=float32),\n", |
||
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||
| 1932 | " dtype=float32),\n", |
||
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||
| 1934 | " dtype=float32),\n", |
||
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||
| 1936 | " dtype=float32),\n", |
||
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||
| 1938 | " dtype=float32),\n", |
||
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||
| 1940 | " dtype=float32),\n", |
||
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||
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||
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||
| 1944 | " dtype=float32),\n", |
||
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||
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||
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||
| 1948 | " dtype=float32),\n", |
||
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||
| 1950 | " dtype=float32),\n", |
||
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||
| 1952 | " dtype=float32),\n", |
||
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||
| 1954 | " dtype=float32),\n", |
||
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||
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| 1957 | " array([-11062.906, 151225.44 , -9126.47 , -53008.6 , ..., -20743.043, -51351.69 , -56898.527, -18331.992],\n", |
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| 1958 | " dtype=float32),\n", |
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| 1959 | " array([-10271.538 , 139316.73 , -7276.3057, -48780.09 , ..., -17509.328 , -47672.734 , -53917.375 , -17393.148 ],\n", |
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| 1960 | " dtype=float32),\n", |
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| 1964 | " dtype=float32),\n", |
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| 1965 | " array([-10013.111, 136178.77 , -7357.057, -47680.777, ..., -18311.768, -46681.93 , -51998.055, -17757.852],\n", |
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| 1966 | " dtype=float32),\n", |
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| 1967 | " array([-10873.949, 141076.52 , -7512.583, -49315.773, ..., -17735.145, -48753.207, -54276.82 , -17905.365],\n", |
||
| 1968 | " dtype=float32),\n", |
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| 1969 | " array([-10167.363 , 137423.16 , -7421.1123, -48246.27 , ..., -18027.809 , -47405.895 , -52850.875 , -17377.105 ],\n", |
||
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| 1973 | " array([ -9600.358, 134204.38 , -7527.952, -47049.27 , ..., -17543.316, -46278.316, -51061.28 , -17659.295],\n", |
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| 1975 | " array([ -9649.322, 132178.19 , -7287.698, -46467.094, ..., -16962.34 , -45471.54 , -51550.07 , -16734.791],\n", |
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| 1976 | " dtype=float32),\n", |
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| 1977 | " array([-10899.907, 145965.8 , -8458.315, -51127.992, ..., -19633.8 , -49563.234, -55265.152, -18518.49 ],\n", |
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| 1978 | " dtype=float32),\n", |
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| 1979 | " array([-10596.631 , 137858.03 , -7126.9224, -48142.992 , ..., -16977.91 , -46924.34 , -53146.848 , -17842.27 ],\n", |
||
| 1980 | " dtype=float32),\n", |
||
| 1981 | " array([ -9373.898, 129825.88 , -7098.856, -45258.715, ..., -17257.139, -44642.566, -49649.973, -17005.82 ],\n", |
||
| 1982 | " dtype=float32),\n", |
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||
| 1984 | " dtype=float32),\n", |
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| 1985 | " array([ -9705.606, 140198.55 , -8236.242, -49501.074, ..., -19223.816, -48205.37 , -53328.984, -17904.79 ],\n", |
||
| 1986 | " dtype=float32),\n", |
||
| 1987 | " array([ -9778.1045, 134988.67 , -7357.5024, -46958.008 , ..., -18108.861 , -46508.875 , -51563.227 , -17443.488 ],\n", |
||
| 1988 | " dtype=float32),\n", |
||
| 1989 | " array([ -9368.639, 132115.66 , -6843.954, -45735.74 , ..., -17910.568, -45852.47 , -50566.594, -17145.262],\n", |
||
| 1990 | " dtype=float32),\n", |
||
| 1991 | " array([-10119.139, 134682.66 , -6984.416, -46799.71 , ..., -17351.426, -46675.633, -51588.844, -16929.186],\n", |
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||
| 1993 | " array([-10887.559 , 154036.95 , -8749.9795, -54050.4 , ..., -20151.871 , -53099.1 , -58758.94 , -20305.912 ],\n", |
||
| 1994 | " dtype=float32),\n", |
||
| 1995 | " array([-10188.1 , 138221.45 , -7628.3765, -48361.906 , ..., -17377.408 , -47631.96 , -53161.49 , -17679.55 ],\n", |
||
| 1996 | " dtype=float32),\n", |
||
| 1997 | " array([-10485.43 , 143950.53 , -7767.999, -50127.523, ..., -19289.607, -49637.844, -54870.535, -18376.43 ],\n", |
||
| 1998 | " dtype=float32),\n", |
||
| 1999 | " array([-10060.594, 135198.06 , -7338.325, -46940.17 , ..., -16792.73 , -46938.754, -52381.176, -17035.594],\n", |
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| 2000 | " dtype=float32),\n", |
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| 2002 | " dtype=float32),\n", |
||
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||
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||
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||
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||
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||
| 2012 | " dtype=float32),\n", |
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||
| 2014 | " dtype=float32),\n", |
||
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||
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| 2735 | " array([-10868.646 , 143887.28 , -8161.3096, -50113.793 , ..., -18159.229 , -49464.07 , -54859.254 , -18338.441 ],\n", |
||
| 2736 | " dtype=float32),\n", |
||
| 2737 | " array([-10044.349 , 138234.9 , -7520.0503, -47988.227 , ..., -18181.389 , -47220.438 , -52872.207 , -17962.234 ],\n", |
||
| 2738 | " dtype=float32),\n", |
||
| 2739 | " array([-10448.092 , 141035.86 , -7786.5405, -49226.72 , ..., -18833.582 , -48237.33 , -53863.195 , -18088.225 ],\n", |
||
| 2740 | " dtype=float32),\n", |
||
| 2741 | " array([-10894.013 , 139155.39 , -7461.7837, -48455.723 , ..., -18387.576 , -48287.562 , -53913.57 , -17648.615 ],\n", |
||
| 2742 | " dtype=float32),\n", |
||
| 2743 | " array([ -821.4669, 151978.92 , -3094.6824, -48929.207 , ..., -6454.1875, -47306.59 , -58581.387 , -23744.344 ],\n", |
||
| 2744 | " dtype=float32),\n", |
||
| 2745 | " array([-10386.709, 145556.66 , -8388.681, -51004.363, ..., -19887.713, -50264.78 , -55312.555, -18267.414],\n", |
||
| 2746 | " dtype=float32),\n", |
||
| 2747 | " array([-10954.063, 144915.73 , -8300.826, -50466.55 , ..., -18784.277, -49640.176, -55164.33 , -18075.064],\n", |
||
| 2748 | " dtype=float32),\n", |
||
| 2749 | " array([-10476.142, 138501.66 , -7601.43 , -48551.77 , ..., -18133.258, -47410.016, -53265.05 , -17589.61 ],\n", |
||
| 2750 | " dtype=float32),\n", |
||
| 2751 | " array([ -2129.5483, 144000.16 , -3646.6157, -47242.992 , ..., -10461.203 , -47674.57 , -56220.39 , -19774.756 ],\n", |
||
| 2752 | " dtype=float32),\n", |
||
| 2753 | " array([ -1789.322 , 145023. , -3882.7065, -47203.53 , ..., -10953.228 , -47194.184 , -57300.18 , -18991.203 ],\n", |
||
| 2754 | " dtype=float32),\n", |
||
| 2755 | " array([ -9015.164, 132998.44 , -7283.794, -46476.316, ..., -17287.709, -45436.227, -50719.8 , -17184.012],\n", |
||
| 2756 | " dtype=float32),\n", |
||
| 2757 | " array([ -6949.803, 107936.19 , 3876.474, -30740.477, ..., -25815.416, -42259.34 , -34216.33 , -14356.996],\n", |
||
| 2758 | " dtype=float32),\n", |
||
| 2759 | " array([ -2805.2156, 150145.42 , -4451.0806, -49853.88 , ..., -11119.602 , -49216.28 , -58772.645 , -19955.117 ],\n", |
||
| 2760 | " dtype=float32),\n", |
||
| 2761 | " array([-11356.179, 143684.17 , -7926.552, -50246.203, ..., -18394.355, -48898.344, -54961.938, -18206.752],\n", |
||
| 2762 | " dtype=float32),\n", |
||
| 2763 | " array([-10341.07 , 140623.98 , -7953.529, -48878.266, ..., -18675.309, -47791.426, -53565.125, -17611.18 ],\n", |
||
| 2764 | " dtype=float32),\n", |
||
| 2765 | " ...]" |
||
| 2766 | ] |
||
| 2767 | }, |
||
| 2768 | "execution_count": 11, |
||
| 2769 | "metadata": {}, |
||
| 2770 | "output_type": "execute_result" |
||
| 2771 | } |
||
| 2772 | ], |
||
| 2773 | "source": [ |
||
| 2774 | "data.items" |
||
| 2775 | ] |
||
| 2776 | }, |
||
| 2777 | { |
||
| 2778 | "cell_type": "code", |
||
| 2779 | "execution_count": 14, |
||
| 2780 | "metadata": {}, |
||
| 2781 | "outputs": [], |
||
| 2782 | "source": [ |
||
| 2783 | "def log_scale(X):\n", |
||
| 2784 | " x=np.asarray(X);e=1e-6\n", |
||
| 2785 | " return np.log10(x+np.abs(x.min())+e) \n", |
||
| 2786 | "\n", |
||
| 2787 | "\n", |
||
| 2788 | "x=np.asarray(data.items)\n", |
||
| 2789 | "bad_fastas = np.where(np.mean(x,axis=1) == 0.)[0]\n", |
||
| 2790 | "X = np.delete(x, bad_fastas,0)\n", |
||
| 2791 | "labelList=[\" \".join(i.split()[1:3]) for i in data.descriptions]\n", |
||
| 2792 | "labelList=np.delete(np.asarray(labelList), bad_fastas)\n", |
||
| 2793 | "vocab=list(np.unique(labelList))\n", |
||
| 2794 | "y=[vocab.index(x) for x in labelList]" |
||
| 2795 | ] |
||
| 2796 | }, |
||
| 2797 | { |
||
| 2798 | "cell_type": "markdown", |
||
| 2799 | "metadata": {}, |
||
| 2800 | "source": [ |
||
| 2801 | "## Correlation Distance in log-scaled space" |
||
| 2802 | ] |
||
| 2803 | }, |
||
| 2804 | { |
||
| 2805 | "cell_type": "markdown", |
||
| 2806 | "metadata": {}, |
||
| 2807 | "source": [ |
||
| 2808 | "### tSNE" |
||
| 2809 | ] |
||
| 2810 | }, |
||
| 2811 | { |
||
| 2812 | "cell_type": "code", |
||
| 2813 | "execution_count": 18, |
||
| 2814 | "metadata": { |
||
| 2815 | "scrolled": true |
||
| 2816 | }, |
||
| 2817 | "outputs": [ |
||
| 2818 | { |
||
| 2819 | "name": "stdout", |
||
| 2820 | "output_type": "stream", |
||
| 2821 | "text": [ |
||
| 2822 | "CPU times: user 31.1 s, sys: 313 ms, total: 31.4 s\n", |
||
| 2823 | "Wall time: 30.9 s\n" |
||
| 2824 | ] |
||
| 2825 | } |
||
| 2826 | ], |
||
| 2827 | "source": [ |
||
| 2828 | "tsne = manifold.TSNE(n_components=3, init='pca', perplexity=10, metric=\"correlation\",random_state=0)\n", |
||
| 2829 | "%time X3 = tsne.fit_transform(log_scale(X))" |
||
| 2830 | ] |
||
| 2831 | }, |
||
| 2832 | { |
||
| 2833 | "cell_type": "code", |
||
| 2834 | "execution_count": 19, |
||
| 2835 | "metadata": {}, |
||
| 2836 | "outputs": [], |
||
| 2837 | "source": [ |
||
| 2838 | "genus = [i.split()[0] for i in labelList]\n", |
||
| 2839 | "genus_vocab=list(np.unique(genus))\n", |
||
| 2840 | "y=[genus_vocab.index(x) for x in genus]\n", |
||
| 2841 | "genus_vocab\n", |
||
| 2842 | "\n", |
||
| 2843 | "X3_df = pd.DataFrame(data=X3, columns=[\"pc1\",'pc2','pc3'], index=labelList)\n", |
||
| 2844 | "\n", |
||
| 2845 | "X3_df[\"genus\"]=genus\n", |
||
| 2846 | "X3_df[\"y\"]=y\n", |
||
| 2847 | "\n", |
||
| 2848 | "genus_df=X3_df.groupby(\"genus\").agg({\"pc1\": list, \"pc2\":list,\"pc3\":list,\"y\":np.mean})" |
||
| 2849 | ] |
||
| 2850 | }, |
||
| 2851 | { |
||
| 2852 | "cell_type": "markdown", |
||
| 2853 | "metadata": {}, |
||
| 2854 | "source": [ |
||
| 2855 | "### Correlation Distance visualisation" |
||
| 2856 | ] |
||
| 2857 | }, |
||
| 2858 | { |
||
| 2859 | "cell_type": "code", |
||
| 2860 | "execution_count": 20, |
||
| 2861 | "metadata": {}, |
||
| 2862 | "outputs": [ |
||
| 2863 | { |
||
| 2864 | "name": "stderr", |
||
| 2865 | "output_type": "stream", |
||
| 2866 | "text": [ |
||
| 2867 | "/home/serge/anaconda3/envs/bio/lib/python3.6/site-packages/IPython/core/display.py:689: UserWarning:\n", |
||
| 2868 | "\n", |
||
| 2869 | "Consider using IPython.display.IFrame instead\n", |
||
| 2870 | "\n" |
||
| 2871 | ] |
||
| 2872 | }, |
||
| 2873 | { |
||
| 2874 | "data": { |
||
| 2875 | "text/html": [ |
||
| 2876 | "<iframe id=\"igraph\" scrolling=\"no\" style=\"border:none;\" seamless=\"seamless\" src=\"https://plot.ly/~sergeman/12.embed\" height=\"1000px\" width=\"1000px\"></iframe>" |
||
| 2877 | ], |
||
| 2878 | "text/plain": [ |
||
| 2879 | "<plotly.tools.PlotlyDisplay object>" |
||
| 2880 | ] |
||
| 2881 | }, |
||
| 2882 | "execution_count": 20, |
||
| 2883 | "metadata": {}, |
||
| 2884 | "output_type": "execute_result" |
||
| 2885 | } |
||
| 2886 | ], |
||
| 2887 | "source": [ |
||
| 2888 | "data=[]\n", |
||
| 2889 | "for g in genus_df.index:\n", |
||
| 2890 | " trace = go.Scatter3d(\n", |
||
| 2891 | " name = str(g),\n", |
||
| 2892 | " x=genus_df.loc[g,\"pc1\"],\n", |
||
| 2893 | " y=genus_df.loc[g,\"pc2\"],\n", |
||
| 2894 | " z=genus_df.loc[g,\"pc3\"],\n", |
||
| 2895 | " mode='markers',\n", |
||
| 2896 | " marker=dict(\n", |
||
| 2897 | " size=8,\n", |
||
| 2898 | " color=genus_df.loc[g,\"y\"], # set color to an array/list of desired values\n", |
||
| 2899 | " colorscale='Jet', # choose a colorscale\n", |
||
| 2900 | " opacity=0.5)\n", |
||
| 2901 | " )\n", |
||
| 2902 | "\n", |
||
| 2903 | " data.append(trace)\n", |
||
| 2904 | " \n", |
||
| 2905 | "\n", |
||
| 2906 | "layout = go.Layout(\n", |
||
| 2907 | " width=1000,\n", |
||
| 2908 | " height=1000,\n", |
||
| 2909 | " margin=dict(\n", |
||
| 2910 | " l=0,\n", |
||
| 2911 | " r=0,\n", |
||
| 2912 | " b=0,\n", |
||
| 2913 | " t=0\n", |
||
| 2914 | " )\n", |
||
| 2915 | ")\n", |
||
| 2916 | "fig = go.Figure(data=data, layout=layout)\n", |
||
| 2917 | "py.iplot(fig, filename='correlation distance ncbi-genomes-2019-04-07 Escherichia,Klebsiella,Bacillus')" |
||
| 2918 | ] |
||
| 2919 | }, |
||
| 2920 | { |
||
| 2921 | "cell_type": "markdown", |
||
| 2922 | "metadata": {}, |
||
| 2923 | "source": [ |
||
| 2924 | "## Eucleadian Distance in log-scaled space" |
||
| 2925 | ] |
||
| 2926 | }, |
||
| 2927 | { |
||
| 2928 | "cell_type": "markdown", |
||
| 2929 | "metadata": {}, |
||
| 2930 | "source": [ |
||
| 2931 | "### tSNE" |
||
| 2932 | ] |
||
| 2933 | }, |
||
| 2934 | { |
||
| 2935 | "cell_type": "code", |
||
| 2936 | "execution_count": 21, |
||
| 2937 | "metadata": {}, |
||
| 2938 | "outputs": [ |
||
| 2939 | { |
||
| 2940 | "name": "stdout", |
||
| 2941 | "output_type": "stream", |
||
| 2942 | "text": [ |
||
| 2943 | "CPU times: user 25.8 s, sys: 334 ms, total: 26.1 s\n", |
||
| 2944 | "Wall time: 25.5 s\n" |
||
| 2945 | ] |
||
| 2946 | } |
||
| 2947 | ], |
||
| 2948 | "source": [ |
||
| 2949 | "tsne = manifold.TSNE(n_components=3, init='pca', perplexity=30,random_state=0)\n", |
||
| 2950 | "%time X3 = tsne.fit_transform(log_scale(X))" |
||
| 2951 | ] |
||
| 2952 | }, |
||
| 2953 | { |
||
| 2954 | "cell_type": "code", |
||
| 2955 | "execution_count": 22, |
||
| 2956 | "metadata": {}, |
||
| 2957 | "outputs": [], |
||
| 2958 | "source": [ |
||
| 2959 | "genus = [i.split()[0] for i in labelList]\n", |
||
| 2960 | "genus_vocab=list(np.unique(genus))\n", |
||
| 2961 | "y=[genus_vocab.index(x) for x in genus]\n", |
||
| 2962 | "genus_vocab\n", |
||
| 2963 | "\n", |
||
| 2964 | "X3_df = pd.DataFrame(data=X3, columns=[\"pc1\",'pc2','pc3'], index=labelList)\n", |
||
| 2965 | "\n", |
||
| 2966 | "X3_df[\"genus\"]=genus\n", |
||
| 2967 | "X3_df[\"y\"]=y\n", |
||
| 2968 | "\n", |
||
| 2969 | "genus_df=X3_df.groupby(\"genus\").agg({\"pc1\": list, \"pc2\":list,\"pc3\":list,\"y\":np.mean})" |
||
| 2970 | ] |
||
| 2971 | }, |
||
| 2972 | { |
||
| 2973 | "cell_type": "markdown", |
||
| 2974 | "metadata": {}, |
||
| 2975 | "source": [ |
||
| 2976 | "### Eucleadian Distance Visualisation" |
||
| 2977 | ] |
||
| 2978 | }, |
||
| 2979 | { |
||
| 2980 | "cell_type": "code", |
||
| 2981 | "execution_count": 32, |
||
| 2982 | "metadata": {}, |
||
| 2983 | "outputs": [ |
||
| 2984 | { |
||
| 2985 | "name": "stderr", |
||
| 2986 | "output_type": "stream", |
||
| 2987 | "text": [ |
||
| 2988 | "/home/serge/anaconda3/envs/bio/lib/python3.6/site-packages/IPython/core/display.py:689: UserWarning:\n", |
||
| 2989 | "\n", |
||
| 2990 | "Consider using IPython.display.IFrame instead\n", |
||
| 2991 | "\n" |
||
| 2992 | ] |
||
| 2993 | }, |
||
| 2994 | { |
||
| 2995 | "data": { |
||
| 2996 | "text/html": [ |
||
| 2997 | "<iframe id=\"igraph\" scrolling=\"no\" style=\"border:none;\" seamless=\"seamless\" src=\"https://plot.ly/~sergeman/14.embed\" height=\"1000px\" width=\"1000px\"></iframe>" |
||
| 2998 | ], |
||
| 2999 | "text/plain": [ |
||
| 3000 | "<plotly.tools.PlotlyDisplay object>" |
||
| 3001 | ] |
||
| 3002 | }, |
||
| 3003 | "execution_count": 32, |
||
| 3004 | "metadata": {}, |
||
| 3005 | "output_type": "execute_result" |
||
| 3006 | } |
||
| 3007 | ], |
||
| 3008 | "source": [ |
||
| 3009 | "data=[]\n", |
||
| 3010 | "for g in genus_df.index:\n", |
||
| 3011 | " trace = go.Scatter3d(\n", |
||
| 3012 | " name = str(g),\n", |
||
| 3013 | " x=genus_df.loc[g,\"pc1\"],\n", |
||
| 3014 | " y=genus_df.loc[g,\"pc2\"],\n", |
||
| 3015 | " z=genus_df.loc[g,\"pc3\"],\n", |
||
| 3016 | " mode='markers',\n", |
||
| 3017 | " marker=dict(\n", |
||
| 3018 | " size=8,\n", |
||
| 3019 | " color=genus_df.loc[g,\"y\"]+1, # set color to an array/list of desired values\n", |
||
| 3020 | " colorscale='YlGnBu', # choose a colorscale\n", |
||
| 3021 | " opacity=0.5)\n", |
||
| 3022 | " )\n", |
||
| 3023 | "\n", |
||
| 3024 | " data.append(trace)\n", |
||
| 3025 | " \n", |
||
| 3026 | "\n", |
||
| 3027 | "layout = go.Layout(\n", |
||
| 3028 | " width=1000,\n", |
||
| 3029 | " height=1000,\n", |
||
| 3030 | " margin=dict(\n", |
||
| 3031 | " l=0,\n", |
||
| 3032 | " r=0,\n", |
||
| 3033 | " b=0,\n", |
||
| 3034 | " t=0\n", |
||
| 3035 | " )\n", |
||
| 3036 | ")\n", |
||
| 3037 | "fig = go.Figure(data=data, layout=layout)\n", |
||
| 3038 | "py.iplot(fig, filename='eucledian distance metric by genus Escherichia|Klebsiella|Bacillus')" |
||
| 3039 | ] |
||
| 3040 | }, |
||
| 3041 | { |
||
| 3042 | "cell_type": "markdown", |
||
| 3043 | "metadata": {}, |
||
| 3044 | "source": [ |
||
| 3045 | "## Eucleadian Distance in unmodified space" |
||
| 3046 | ] |
||
| 3047 | }, |
||
| 3048 | { |
||
| 3049 | "cell_type": "markdown", |
||
| 3050 | "metadata": {}, |
||
| 3051 | "source": [ |
||
| 3052 | "### tSNE" |
||
| 3053 | ] |
||
| 3054 | }, |
||
| 3055 | { |
||
| 3056 | "cell_type": "code", |
||
| 3057 | "execution_count": 27, |
||
| 3058 | "metadata": {}, |
||
| 3059 | "outputs": [ |
||
| 3060 | { |
||
| 3061 | "name": "stdout", |
||
| 3062 | "output_type": "stream", |
||
| 3063 | "text": [ |
||
| 3064 | "CPU times: user 41.5 s, sys: 313 ms, total: 41.8 s\n", |
||
| 3065 | "Wall time: 41.2 s\n" |
||
| 3066 | ] |
||
| 3067 | } |
||
| 3068 | ], |
||
| 3069 | "source": [ |
||
| 3070 | "tsne = manifold.TSNE(n_components=3, init='pca', perplexity=30,random_state=0)\n", |
||
| 3071 | "%time X3 = tsne.fit_transform(X)" |
||
| 3072 | ] |
||
| 3073 | }, |
||
| 3074 | { |
||
| 3075 | "cell_type": "code", |
||
| 3076 | "execution_count": 28, |
||
| 3077 | "metadata": {}, |
||
| 3078 | "outputs": [], |
||
| 3079 | "source": [ |
||
| 3080 | "genus = [i.split()[0] for i in labelList]\n", |
||
| 3081 | "genus_vocab=list(np.unique(genus))\n", |
||
| 3082 | "y=[genus_vocab.index(x) for x in genus]\n", |
||
| 3083 | "genus_vocab\n", |
||
| 3084 | "\n", |
||
| 3085 | "X3_df = pd.DataFrame(data=X3, columns=[\"pc1\",'pc2','pc3'], index=labelList)\n", |
||
| 3086 | "\n", |
||
| 3087 | "X3_df[\"genus\"]=genus\n", |
||
| 3088 | "X3_df[\"y\"]=y\n", |
||
| 3089 | "\n", |
||
| 3090 | "genus_df=X3_df.groupby(\"genus\").agg({\"pc1\": list, \"pc2\":list,\"pc3\":list,\"y\":np.mean})" |
||
| 3091 | ] |
||
| 3092 | }, |
||
| 3093 | { |
||
| 3094 | "cell_type": "markdown", |
||
| 3095 | "metadata": {}, |
||
| 3096 | "source": [ |
||
| 3097 | "### Eucleadian Distance Visualisation" |
||
| 3098 | ] |
||
| 3099 | }, |
||
| 3100 | { |
||
| 3101 | "cell_type": "code", |
||
| 3102 | "execution_count": 29, |
||
| 3103 | "metadata": {}, |
||
| 3104 | "outputs": [ |
||
| 3105 | { |
||
| 3106 | "name": "stderr", |
||
| 3107 | "output_type": "stream", |
||
| 3108 | "text": [ |
||
| 3109 | "/home/serge/anaconda3/envs/bio/lib/python3.6/site-packages/IPython/core/display.py:689: UserWarning:\n", |
||
| 3110 | "\n", |
||
| 3111 | "Consider using IPython.display.IFrame instead\n", |
||
| 3112 | "\n" |
||
| 3113 | ] |
||
| 3114 | }, |
||
| 3115 | { |
||
| 3116 | "data": { |
||
| 3117 | "text/html": [ |
||
| 3118 | "<iframe id=\"igraph\" scrolling=\"no\" style=\"border:none;\" seamless=\"seamless\" src=\"https://plot.ly/~sergeman/16.embed\" height=\"1000px\" width=\"1000px\"></iframe>" |
||
| 3119 | ], |
||
| 3120 | "text/plain": [ |
||
| 3121 | "<plotly.tools.PlotlyDisplay object>" |
||
| 3122 | ] |
||
| 3123 | }, |
||
| 3124 | "execution_count": 29, |
||
| 3125 | "metadata": {}, |
||
| 3126 | "output_type": "execute_result" |
||
| 3127 | } |
||
| 3128 | ], |
||
| 3129 | "source": [ |
||
| 3130 | "data=[]\n", |
||
| 3131 | "for g in genus_df.index:\n", |
||
| 3132 | " trace = go.Scatter3d(\n", |
||
| 3133 | " name = str(g),\n", |
||
| 3134 | " x=genus_df.loc[g,\"pc1\"],\n", |
||
| 3135 | " y=genus_df.loc[g,\"pc2\"],\n", |
||
| 3136 | " z=genus_df.loc[g,\"pc3\"],\n", |
||
| 3137 | " mode='markers',\n", |
||
| 3138 | " marker=dict(\n", |
||
| 3139 | " size=8,\n", |
||
| 3140 | " color=genus_df.loc[g,\"y\"], # set color to an array/list of desired values\n", |
||
| 3141 | " colorscale='Jet', # choose a colorscale\n", |
||
| 3142 | " opacity=0.5)\n", |
||
| 3143 | " )\n", |
||
| 3144 | "\n", |
||
| 3145 | " data.append(trace)\n", |
||
| 3146 | " \n", |
||
| 3147 | "\n", |
||
| 3148 | "layout = go.Layout(\n", |
||
| 3149 | " width=1000,\n", |
||
| 3150 | " height=1000,\n", |
||
| 3151 | " margin=dict(\n", |
||
| 3152 | " l=0,\n", |
||
| 3153 | " r=0,\n", |
||
| 3154 | " b=0,\n", |
||
| 3155 | " t=0\n", |
||
| 3156 | " )\n", |
||
| 3157 | ")\n", |
||
| 3158 | "fig = go.Figure(data=data, layout=layout)\n", |
||
| 3159 | "py.iplot(fig, filename='eucledian distance in native space Escherichia|Klebsiella|Bacillus')" |
||
| 3160 | ] |
||
| 3161 | }, |
||
| 3162 | { |
||
| 3163 | "cell_type": "markdown", |
||
| 3164 | "metadata": {}, |
||
| 3165 | "source": [ |
||
| 3166 | "## Genome Inventory" |
||
| 3167 | ] |
||
| 3168 | }, |
||
| 3169 | { |
||
| 3170 | "cell_type": "code", |
||
| 3171 | "execution_count": 8, |
||
| 3172 | "metadata": {}, |
||
| 3173 | "outputs": [], |
||
| 3174 | "source": [ |
||
| 3175 | "all_fastas = sequence.Dna2VecList.from_folder(DB)" |
||
| 3176 | ] |
||
| 3177 | }, |
||
| 3178 | { |
||
| 3179 | "cell_type": "code", |
||
| 3180 | "execution_count": 28, |
||
| 3181 | "metadata": {}, |
||
| 3182 | "outputs": [ |
||
| 3183 | { |
||
| 3184 | "data": { |
||
| 3185 | "text/plain": [ |
||
| 3186 | "{'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003261035.1_ASM326103v1_genomic.fna',\n", |
||
| 3187 | " 'description': 'NZ_CP030062.1 Mannheimia varigena strain Teagasc 1 chromosome, complete genome',\n", |
||
| 3188 | " 'id': 'NZ_CP030062.1',\n", |
||
| 3189 | " 'name': 'NZ_CP030062.1'}" |
||
| 3190 | ] |
||
| 3191 | }, |
||
| 3192 | "execution_count": 28, |
||
| 3193 | "metadata": {}, |
||
| 3194 | "output_type": "execute_result" |
||
| 3195 | } |
||
| 3196 | ], |
||
| 3197 | "source": [ |
||
| 3198 | "next(iter(all_fastas))" |
||
| 3199 | ] |
||
| 3200 | }, |
||
| 3201 | { |
||
| 3202 | "cell_type": "code", |
||
| 3203 | "execution_count": 30, |
||
| 3204 | "metadata": { |
||
| 3205 | "scrolled": true |
||
| 3206 | }, |
||
| 3207 | "outputs": [], |
||
| 3208 | "source": [ |
||
| 3209 | "a = [x for x in all_fastas if \"plasmid\" not in x['description'].split()] " |
||
| 3210 | ] |
||
| 3211 | }, |
||
| 3212 | { |
||
| 3213 | "cell_type": "code", |
||
| 3214 | "execution_count": 31, |
||
| 3215 | "metadata": {}, |
||
| 3216 | "outputs": [ |
||
| 3217 | { |
||
| 3218 | "data": { |
||
| 3219 | "text/plain": [ |
||
| 3220 | "[{'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003261035.1_ASM326103v1_genomic.fna',\n", |
||
| 3221 | " 'description': 'NZ_CP030062.1 Mannheimia varigena strain Teagasc 1 chromosome, complete genome',\n", |
||
| 3222 | " 'id': 'NZ_CP030062.1',\n", |
||
| 3223 | " 'name': 'NZ_CP030062.1'},\n", |
||
| 3224 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000750395.2_ASM75039v2_genomic.fna',\n", |
||
| 3225 | " 'description': 'NZ_CP009085.2 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE3-98983-4, complete genome',\n", |
||
| 3226 | " 'id': 'NZ_CP009085.2',\n", |
||
| 3227 | " 'name': 'NZ_CP009085.2'},\n", |
||
| 3228 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900205745.1_Lf_IMDO_130101_genomic.fna',\n", |
||
| 3229 | " 'description': 'NZ_LT906621.1 Lactobacillus fermentum strain IMDO 130101 genome assembly, chromosome: I',\n", |
||
| 3230 | " 'id': 'NZ_LT906621.1',\n", |
||
| 3231 | " 'name': 'NZ_LT906621.1'},\n", |
||
| 3232 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001854145.2_ASM185414v2_genomic.fna',\n", |
||
| 3233 | " 'description': 'NZ_CP017188.2 Xanthomonas citri pv. glycines str. 8ra chromosome, complete genome',\n", |
||
| 3234 | " 'id': 'NZ_CP017188.2',\n", |
||
| 3235 | " 'name': 'NZ_CP017188.2'},\n", |
||
| 3236 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002240155.1_ASM224015v1_genomic.fna',\n", |
||
| 3237 | " 'description': 'NZ_CP022223.1 Mycobacterium chimaera strain SJ42 chromosome, complete genome',\n", |
||
| 3238 | " 'id': 'NZ_CP022223.1',\n", |
||
| 3239 | " 'name': 'NZ_CP022223.1'},\n", |
||
| 3240 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000056065.1_ASM5606v1_genomic.fna',\n", |
||
| 3241 | " 'description': 'NC_008054.1 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 complete genome',\n", |
||
| 3242 | " 'id': 'NC_008054.1',\n", |
||
| 3243 | " 'name': 'NC_008054.1'},\n", |
||
| 3244 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900324205.1_1_1439_genomic.fna',\n", |
||
| 3245 | " 'description': 'NZ_LT992456.1 Staphylococcus aureus isolate 1_1439 genome assembly, chromosome: I',\n", |
||
| 3246 | " 'id': 'NZ_LT992456.1',\n", |
||
| 3247 | " 'name': 'NZ_LT992456.1'},\n", |
||
| 3248 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900324205.1_1_1439_genomic.fna',\n", |
||
| 3249 | " 'description': 'NZ_LT992457.1 Staphylococcus aureus isolate 1_1439 genome assembly, plasmid: II',\n", |
||
| 3250 | " 'id': 'NZ_LT992457.1',\n", |
||
| 3251 | " 'name': 'NZ_LT992457.1'},\n", |
||
| 3252 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001618685.1_ASM161868v1_genomic.fna',\n", |
||
| 3253 | " 'description': 'NZ_CP014342.1 Geobacillus subterraneus strain KCTC 3922, complete genome',\n", |
||
| 3254 | " 'id': 'NZ_CP014342.1',\n", |
||
| 3255 | " 'name': 'NZ_CP014342.1'},\n", |
||
| 3256 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001307295.1_ASM130729v1_genomic.fna',\n", |
||
| 3257 | " 'description': 'NZ_CP012700.1 Sphingopyxis macrogoltabida strain EY-1, complete genome',\n", |
||
| 3258 | " 'id': 'NZ_CP012700.1',\n", |
||
| 3259 | " 'name': 'NZ_CP012700.1'},\n", |
||
| 3260 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000183115.1_ASM18311v1_genomic.fna',\n", |
||
| 3261 | " 'description': 'NC_014733.1 Methylovorus sp. MP688, complete genome',\n", |
||
| 3262 | " 'id': 'NC_014733.1',\n", |
||
| 3263 | " 'name': 'NC_014733.1'},\n", |
||
| 3264 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002838225.1_ASM283822v1_genomic.fna',\n", |
||
| 3265 | " 'description': 'NZ_CP021390.1 Bifidobacterium breve strain DRBB26 chromosome, complete genome',\n", |
||
| 3266 | " 'id': 'NZ_CP021390.1',\n", |
||
| 3267 | " 'name': 'NZ_CP021390.1'},\n", |
||
| 3268 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001611975.1_ASM161197v1_genomic.fna',\n", |
||
| 3269 | " 'description': 'NZ_CP014525.1 Haematospirillum jordaniae strain H5569, complete genome',\n", |
||
| 3270 | " 'id': 'NZ_CP014525.1',\n", |
||
| 3271 | " 'name': 'NZ_CP014525.1'},\n", |
||
| 3272 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002024245.1_ASM202424v1_genomic.fna',\n", |
||
| 3273 | " 'description': 'NZ_CP019970.1 Enterococcus faecium isolate 2014-VREF-114 chromosome, complete genome',\n", |
||
| 3274 | " 'id': 'NZ_CP019970.1',\n", |
||
| 3275 | " 'name': 'NZ_CP019970.1'},\n", |
||
| 3276 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000367205.1_ASM36720v1_genomic.fna',\n", |
||
| 3277 | " 'description': 'NC_021064.1 Cutibacterium avidum 44067, complete genome',\n", |
||
| 3278 | " 'id': 'NC_021064.1',\n", |
||
| 3279 | " 'name': 'NC_021064.1'},\n", |
||
| 3280 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002753405.1_ASM275340v1_genomic.fna',\n", |
||
| 3281 | " 'description': 'NZ_CP024549.1 Klebsiella pneumoniae strain INF163 chromosome, complete genome',\n", |
||
| 3282 | " 'id': 'NZ_CP024549.1',\n", |
||
| 3283 | " 'name': 'NZ_CP024549.1'},\n", |
||
| 3284 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000008225.1_ASM822v1_genomic.fna',\n", |
||
| 3285 | " 'description': 'NC_007332.1 Mycoplasma hyopneumoniae 7448, complete genome',\n", |
||
| 3286 | " 'id': 'NC_007332.1',\n", |
||
| 3287 | " 'name': 'NC_007332.1'},\n", |
||
| 3288 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001448785.2_ASM144878v2_genomic.fna',\n", |
||
| 3289 | " 'description': 'NZ_CP030175.1 Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome',\n", |
||
| 3290 | " 'id': 'NZ_CP030175.1',\n", |
||
| 3291 | " 'name': 'NZ_CP030175.1'},\n", |
||
| 3292 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001767235.1_ASM176723v1_genomic.fna',\n", |
||
| 3293 | " 'description': 'NZ_CP017599.1 Moorea producens PAL-8-15-08-1 chromosome, complete genome',\n", |
||
| 3294 | " 'id': 'NZ_CP017599.1',\n", |
||
| 3295 | " 'name': 'NZ_CP017599.1'},\n", |
||
| 3296 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000338115.2_ASM33811v2_genomic.fna',\n", |
||
| 3297 | " 'description': 'NC_020229.1 Lactobacillus plantarum ZJ316, complete genome',\n", |
||
| 3298 | " 'id': 'NC_020229.1',\n", |
||
| 3299 | " 'name': 'NC_020229.1'},\n", |
||
| 3300 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000014405.1_ASM1440v1_genomic.fna',\n", |
||
| 3301 | " 'description': 'NC_008529.1 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete genome',\n", |
||
| 3302 | " 'id': 'NC_008529.1',\n", |
||
| 3303 | " 'name': 'NC_008529.1'},\n", |
||
| 3304 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004299785.1_ASM429978v1_genomic.fna',\n", |
||
| 3305 | " 'description': 'NZ_CP036246.1 [Arcobacter] porcinus strain CCUG 56899 chromosome, complete genome',\n", |
||
| 3306 | " 'id': 'NZ_CP036246.1',\n", |
||
| 3307 | " 'name': 'NZ_CP036246.1'},\n", |
||
| 3308 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000015305.1_ASM1530v1_genomic.fna',\n", |
||
| 3309 | " 'description': 'NC_008726.1 Mycobacterium vanbaalenii PYR-1, complete genome',\n", |
||
| 3310 | " 'id': 'NC_008726.1',\n", |
||
| 3311 | " 'name': 'NC_008726.1'},\n", |
||
| 3312 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000706765.1_ASM70676v1_genomic.fna',\n", |
||
| 3313 | " 'description': 'NZ_CP006018.1 Bifidobacterium indicum LMG 11587 = DSM 20214, complete genome',\n", |
||
| 3314 | " 'id': 'NZ_CP006018.1',\n", |
||
| 3315 | " 'name': 'NZ_CP006018.1'},\n", |
||
| 3316 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003815875.1_ASM381587v1_genomic.fna',\n", |
||
| 3317 | " 'description': 'NZ_CP033924.1 Chryseobacterium lactis strain KC_1864 chromosome, complete genome',\n", |
||
| 3318 | " 'id': 'NZ_CP033924.1',\n", |
||
| 3319 | " 'name': 'NZ_CP033924.1'},\n", |
||
| 3320 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002164855.2_ASM216485v2_genomic.fna',\n", |
||
| 3321 | " 'description': 'NZ_CP031721.1 Klebsiella pneumoniae strain WCHKP3 chromosome, complete genome',\n", |
||
| 3322 | " 'id': 'NZ_CP031721.1',\n", |
||
| 3323 | " 'name': 'NZ_CP031721.1'},\n", |
||
| 3324 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001278845.1_ASM127884v1_genomic.fna',\n", |
||
| 3325 | " 'description': 'NZ_CP012590.1 Actinomyces sp. oral taxon 414 strain F0588, complete genome',\n", |
||
| 3326 | " 'id': 'NZ_CP012590.1',\n", |
||
| 3327 | " 'name': 'NZ_CP012590.1'},\n", |
||
| 3328 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001559635.1_ASM155963v1_genomic.fna',\n", |
||
| 3329 | " 'description': 'NZ_CP014269.1 Escherichia coli B strain C3029, complete genome',\n", |
||
| 3330 | " 'id': 'NZ_CP014269.1',\n", |
||
| 3331 | " 'name': 'NZ_CP014269.1'},\n", |
||
| 3332 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001549715.1_ASM154971v1_genomic.fna',\n", |
||
| 3333 | " 'description': 'NZ_AP014710.1 Helicobacter pylori DNA, complete genome, strain: ML1',\n", |
||
| 3334 | " 'id': 'NZ_AP014710.1',\n", |
||
| 3335 | " 'name': 'NZ_AP014710.1'},\n", |
||
| 3336 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000583105.1_ASM58310v1_genomic.fna',\n", |
||
| 3337 | " 'description': 'NZ_CP006742.1 Bacillus anthracis str. SVA11, complete genome',\n", |
||
| 3338 | " 'id': 'NZ_CP006742.1',\n", |
||
| 3339 | " 'name': 'NZ_CP006742.1'},\n", |
||
| 3340 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001457475.1_NCTC10807_genomic.fna',\n", |
||
| 3341 | " 'description': 'NZ_LN831029.1 Achromobacter xylosoxidans genome assembly NCTC10807, chromosome : 1',\n", |
||
| 3342 | " 'id': 'NZ_LN831029.1',\n", |
||
| 3343 | " 'name': 'NZ_LN831029.1'},\n", |
||
| 3344 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001596755.1_ASM159675v1_genomic.fna',\n", |
||
| 3345 | " 'description': 'NZ_CP014783.1 Bacillus amyloliquefaciens strain B15 chromosome, complete genome',\n", |
||
| 3346 | " 'id': 'NZ_CP014783.1',\n", |
||
| 3347 | " 'name': 'NZ_CP014783.1'},\n", |
||
| 3348 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001558395.1_ASM155839v2_genomic.fna',\n", |
||
| 3349 | " 'description': 'NZ_CP014153.1 Bordetella pertussis strain ATCC:BAA-1335D-5, complete genome',\n", |
||
| 3350 | " 'id': 'NZ_CP014153.1',\n", |
||
| 3351 | " 'name': 'NZ_CP014153.1'},\n", |
||
| 3352 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002865745.1_ASM286574v1_genomic.fna',\n", |
||
| 3353 | " 'description': 'NZ_CP013843.1 Clostridium botulinum strain B742 chromosome, complete genome',\n", |
||
| 3354 | " 'id': 'NZ_CP013843.1',\n", |
||
| 3355 | " 'name': 'NZ_CP013843.1'},\n", |
||
| 3356 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002688565.1_ASM268856v1_genomic.fna',\n", |
||
| 3357 | " 'description': 'NZ_CP024011.1 Acinetobacter sp. LoGeW2-3 chromosome, complete genome',\n", |
||
| 3358 | " 'id': 'NZ_CP024011.1',\n", |
||
| 3359 | " 'name': 'NZ_CP024011.1'},\n", |
||
| 3360 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003033905.1_ASM303390v1_genomic.fna',\n", |
||
| 3361 | " 'description': 'NZ_CP027118.1 Escherichia coli strain 26561 chromosome, complete genome',\n", |
||
| 3362 | " 'id': 'NZ_CP027118.1',\n", |
||
| 3363 | " 'name': 'NZ_CP027118.1'},\n", |
||
| 3364 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000830925.1_ASM83092v1_genomic.fna',\n", |
||
| 3365 | " 'description': 'NZ_CP006949.1 Dehalococcoides mccartyi CG1, complete genome',\n", |
||
| 3366 | " 'id': 'NZ_CP006949.1',\n", |
||
| 3367 | " 'name': 'NZ_CP006949.1'},\n", |
||
| 3368 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003443875.1_ASM344387v1_genomic.fna',\n", |
||
| 3369 | " 'description': 'NZ_CP027482.1 Aeromicrobium sp. A1-2 chromosome, complete genome',\n", |
||
| 3370 | " 'id': 'NZ_CP027482.1',\n", |
||
| 3371 | " 'name': 'NZ_CP027482.1'},\n", |
||
| 3372 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000283695.1_ASM28369v1_genomic.fna',\n", |
||
| 3373 | " 'description': 'NC_016784.1 Bacillus amyloliquefaciens subsp. plantarum CAU B946 complete genome',\n", |
||
| 3374 | " 'id': 'NC_016784.1',\n", |
||
| 3375 | " 'name': 'NC_016784.1'},\n", |
||
| 3376 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003287995.1_ASM328799v1_genomic.fna',\n", |
||
| 3377 | " 'description': 'NZ_CP021769.1 Streptococcus agalactiae strain B509 chromosome, complete genome',\n", |
||
| 3378 | " 'id': 'NZ_CP021769.1',\n", |
||
| 3379 | " 'name': 'NZ_CP021769.1'},\n", |
||
| 3380 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003194345.1_ASM319434v1_genomic.fna',\n", |
||
| 3381 | " 'description': 'NZ_CP028483.1 Escherichia coli strain E41-1 chromosome, complete genome',\n", |
||
| 3382 | " 'id': 'NZ_CP028483.1',\n", |
||
| 3383 | " 'name': 'NZ_CP028483.1'},\n", |
||
| 3384 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002951475.1_ASM295147v1_genomic.fna',\n", |
||
| 3385 | " 'description': 'NZ_CP014025.1 Pseudomonas fulva strain FDAARGOS_167 chromosome, complete genome',\n", |
||
| 3386 | " 'id': 'NZ_CP014025.1',\n", |
||
| 3387 | " 'name': 'NZ_CP014025.1'},\n", |
||
| 3388 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000550765.1_ASM55076v1_genomic.fna',\n", |
||
| 3389 | " 'description': 'NZ_CP004360.1 Komagataeibacter xylinus E25 chromosome, complete genome',\n", |
||
| 3390 | " 'id': 'NZ_CP004360.1',\n", |
||
| 3391 | " 'name': 'NZ_CP004360.1'},\n", |
||
| 3392 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001922285.1_ASM192228v1_genomic.fna',\n", |
||
| 3393 | " 'description': 'NZ_CP017292.1 Corynebacterium pseudotuberculosis strain MEX31, complete genome',\n", |
||
| 3394 | " 'id': 'NZ_CP017292.1',\n", |
||
| 3395 | " 'name': 'NZ_CP017292.1'},\n", |
||
| 3396 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004010915.1_ASM401091v1_genomic.fna',\n", |
||
| 3397 | " 'description': 'NZ_CP022444.1 Klebsiella sp. LY chromosome, complete genome',\n", |
||
| 3398 | " 'id': 'NZ_CP022444.1',\n", |
||
| 3399 | " 'name': 'NZ_CP022444.1'},\n", |
||
| 3400 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001431745.1_ASM143174v1_genomic.fna',\n", |
||
| 3401 | " 'description': 'NZ_CP008750.1 Brucella melitensis strain 20236 chromosome 1, complete sequence',\n", |
||
| 3402 | " 'id': 'NZ_CP008750.1',\n", |
||
| 3403 | " 'name': 'NZ_CP008750.1'},\n", |
||
| 3404 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001431745.1_ASM143174v1_genomic.fna',\n", |
||
| 3405 | " 'description': 'NZ_CP008751.1 Brucella melitensis strain 20236 chromosome 2, complete sequence',\n", |
||
| 3406 | " 'id': 'NZ_CP008751.1',\n", |
||
| 3407 | " 'name': 'NZ_CP008751.1'},\n", |
||
| 3408 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000521585.1_ASM52158v1_genomic.fna',\n", |
||
| 3409 | " 'description': 'NZ_CP002703.1 Buchnera aphidicola str. F009 (Myzus persicae), complete genome',\n", |
||
| 3410 | " 'id': 'NZ_CP002703.1',\n", |
||
| 3411 | " 'name': 'NZ_CP002703.1'},\n", |
||
| 3412 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001412295.1_ASM141229v1_genomic.fna',\n", |
||
| 3413 | " 'description': 'NZ_CP012149.1 Campylobacter jejuni strain CJM1cam, complete genome',\n", |
||
| 3414 | " 'id': 'NZ_CP012149.1',\n", |
||
| 3415 | " 'name': 'NZ_CP012149.1'},\n", |
||
| 3416 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003721495.1_ASM372149v1_genomic.fna',\n", |
||
| 3417 | " 'description': 'NZ_CP033581.1 Streptomyces sp. ADI95-16 chromosome, complete genome',\n", |
||
| 3418 | " 'id': 'NZ_CP033581.1',\n", |
||
| 3419 | " 'name': 'NZ_CP033581.1'},\n", |
||
| 3420 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001027125.1_ASM102712v1_genomic.fna',\n", |
||
| 3421 | " 'description': 'NZ_CP007687.1 Listeria monocytogenes strain L2625, complete genome',\n", |
||
| 3422 | " 'id': 'NZ_CP007687.1',\n", |
||
| 3423 | " 'name': 'NZ_CP007687.1'},\n", |
||
| 3424 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000021885.1_ASM2188v1_genomic.fna',\n", |
||
| 3425 | " 'description': 'NC_011852.1 Haemophilus parasuis SH0165, complete genome',\n", |
||
| 3426 | " 'id': 'NC_011852.1',\n", |
||
| 3427 | " 'name': 'NC_011852.1'},\n", |
||
| 3428 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000009925.1_ASM992v1_genomic.fna',\n", |
||
| 3429 | " 'description': 'NC_006347.1 Bacteroides fragilis YCH46 DNA, complete genome',\n", |
||
| 3430 | " 'id': 'NC_006347.1',\n", |
||
| 3431 | " 'name': 'NC_006347.1'},\n", |
||
| 3432 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001610915.1_ASM161091v1_genomic.fna',\n", |
||
| 3433 | " 'description': 'NZ_CP012002.1 Xanthomonas fuscans subsp. aurantifolii strain 1566, complete genome',\n", |
||
| 3434 | " 'id': 'NZ_CP012002.1',\n", |
||
| 3435 | " 'name': 'NZ_CP012002.1'},\n", |
||
| 3436 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001610915.1_ASM161091v1_genomic.fna',\n", |
||
| 3437 | " 'description': 'NZ_CP012003.1 Xanthomonas fuscans subsp. aurantifolii strain 1566 plasmid, complete sequence',\n", |
||
| 3438 | " 'id': 'NZ_CP012003.1',\n", |
||
| 3439 | " 'name': 'NZ_CP012003.1'},\n", |
||
| 3440 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001987915.1_ASM198791v1_genomic.fna',\n", |
||
| 3441 | " 'description': 'NZ_CP011763.1 Bordetella pertussis strain J090, complete genome',\n", |
||
| 3442 | " 'id': 'NZ_CP011763.1',\n", |
||
| 3443 | " 'name': 'NZ_CP011763.1'},\n", |
||
| 3444 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637775.1_52592_D02_genomic.fna',\n", |
||
| 3445 | " 'description': 'NZ_LR134398.1 Listeria monocytogenes strain NCTC7974 genome assembly, chromosome: 1',\n", |
||
| 3446 | " 'id': 'NZ_LR134398.1',\n", |
||
| 3447 | " 'name': 'NZ_LR134398.1'},\n", |
||
| 3448 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637775.1_52592_D02_genomic.fna',\n", |
||
| 3449 | " 'description': 'NZ_LR134399.1 Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 2',\n", |
||
| 3450 | " 'id': 'NZ_LR134399.1',\n", |
||
| 3451 | " 'name': 'NZ_LR134399.1'},\n", |
||
| 3452 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637775.1_52592_D02_genomic.fna',\n", |
||
| 3453 | " 'description': 'NZ_LR134400.1 Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 3',\n", |
||
| 3454 | " 'id': 'NZ_LR134400.1',\n", |
||
| 3455 | " 'name': 'NZ_LR134400.1'},\n", |
||
| 3456 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637775.1_52592_D02_genomic.fna',\n", |
||
| 3457 | " 'description': 'NZ_LR134401.1 Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 4',\n", |
||
| 3458 | " 'id': 'NZ_LR134401.1',\n", |
||
| 3459 | " 'name': 'NZ_LR134401.1'},\n", |
||
| 3460 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637775.1_52592_D02_genomic.fna',\n", |
||
| 3461 | " 'description': 'NZ_LR134402.1 Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 5',\n", |
||
| 3462 | " 'id': 'NZ_LR134402.1',\n", |
||
| 3463 | " 'name': 'NZ_LR134402.1'},\n", |
||
| 3464 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637775.1_52592_D02_genomic.fna',\n", |
||
| 3465 | " 'description': 'NZ_LR134403.1 Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 6',\n", |
||
| 3466 | " 'id': 'NZ_LR134403.1',\n", |
||
| 3467 | " 'name': 'NZ_LR134403.1'},\n", |
||
| 3468 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001971645.1_ASM197164v1_genomic.fna',\n", |
||
| 3469 | " 'description': 'NZ_CP019325.1 Achromobacter insolitus strain DSM 23807 chromosome, complete genome',\n", |
||
| 3470 | " 'id': 'NZ_CP019325.1',\n", |
||
| 3471 | " 'name': 'NZ_CP019325.1'},\n", |
||
| 3472 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000632395.1_ASM63239v1_genomic.fna',\n", |
||
| 3473 | " 'description': 'NZ_CP007546.1 Enterobacter asburiae L1, complete genome',\n", |
||
| 3474 | " 'id': 'NZ_CP007546.1',\n", |
||
| 3475 | " 'name': 'NZ_CP007546.1'},\n", |
||
| 3476 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001584205.1_ASM158420v1_genomic.fna',\n", |
||
| 3477 | " 'description': 'NZ_CP013235.1 Collimonas arenae strain Ter282, complete genome',\n", |
||
| 3478 | " 'id': 'NZ_CP013235.1',\n", |
||
| 3479 | " 'name': 'NZ_CP013235.1'},\n", |
||
| 3480 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003718575.1_ASM371857v1_genomic.fna',\n", |
||
| 3481 | " 'description': 'NZ_CP029853.1 Salmonella enterica subsp. enterica serovar Typhi strain 343077_281186 chromosome, complete genome',\n", |
||
| 3482 | " 'id': 'NZ_CP029853.1',\n", |
||
| 3483 | " 'name': 'NZ_CP029853.1'},\n", |
||
| 3484 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000576165.1_ASM57616v1_genomic.fna',\n", |
||
| 3485 | " 'description': 'NZ_CP003715.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023, complete genome',\n", |
||
| 3486 | " 'id': 'NZ_CP003715.1',\n", |
||
| 3487 | " 'name': 'NZ_CP003715.1'},\n", |
||
| 3488 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000801185.2_ASM80118v2_genomic.fna',\n", |
||
| 3489 | " 'description': 'NZ_CP009106.2 Escherichia coli strain 94-3024, complete genome',\n", |
||
| 3490 | " 'id': 'NZ_CP009106.2',\n", |
||
| 3491 | " 'name': 'NZ_CP009106.2'},\n", |
||
| 3492 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002197345.1_ASM219734v1_genomic.fna',\n", |
||
| 3493 | " 'description': 'NZ_CP021851.1 Enterobacter cloacae strain A1137 chromosome, complete genome',\n", |
||
| 3494 | " 'id': 'NZ_CP021851.1',\n", |
||
| 3495 | " 'name': 'NZ_CP021851.1'},\n", |
||
| 3496 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003856495.1_ASM385649v1_genomic.fna',\n", |
||
| 3497 | " 'description': 'NZ_CP034118.1 Thermoactinomycetaceae bacterium SCSIO 07575 chromosome, complete genome',\n", |
||
| 3498 | " 'id': 'NZ_CP034118.1',\n", |
||
| 3499 | " 'name': 'NZ_CP034118.1'},\n", |
||
| 3500 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001549875.1_ASM154987v1_genomic.fna',\n", |
||
| 3501 | " 'description': 'NZ_AP014712.1 Helicobacter pylori DNA, complete genome, strain: ML3',\n", |
||
| 3502 | " 'id': 'NZ_AP014712.1',\n", |
||
| 3503 | " 'name': 'NZ_AP014712.1'},\n", |
||
| 3504 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900095075.1_PFRJS12-1_genomic.fna',\n", |
||
| 3505 | " 'description': 'NZ_LT604998.1 Propionibacterium freudenreichii isolate PFRJS12-1 genome assembly, chromosome: I',\n", |
||
| 3506 | " 'id': 'NZ_LT604998.1',\n", |
||
| 3507 | " 'name': 'NZ_LT604998.1'},\n", |
||
| 3508 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002951875.1_ASM295187v1_genomic.fna',\n", |
||
| 3509 | " 'description': 'NZ_CP019651.1 Paenibacillus larvae subsp. larvae strain ERIC_I chromosome, complete genome',\n", |
||
| 3510 | " 'id': 'NZ_CP019651.1',\n", |
||
| 3511 | " 'name': 'NZ_CP019651.1'},\n", |
||
| 3512 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000331065.1_ASM33106v1_genomic.fna',\n", |
||
| 3513 | " 'description': 'NC_020075.1 Candidatus Blochmannia chromaiodes str. 640, complete genome',\n", |
||
| 3514 | " 'id': 'NC_020075.1',\n", |
||
| 3515 | " 'name': 'NC_020075.1'},\n", |
||
| 3516 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001900835.1_ASM190083v1_genomic.fna',\n", |
||
| 3517 | " 'description': 'NZ_CP010172.1 Escherichia coli strain H8, complete genome',\n", |
||
| 3518 | " 'id': 'NZ_CP010172.1',\n", |
||
| 3519 | " 'name': 'NZ_CP010172.1'},\n", |
||
| 3520 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000156855.2_ASM15685v2_genomic.fna',\n", |
||
| 3521 | " 'description': 'NC_022243.1 Neisseria gonorrhoeae MS11 plasmid, complete sequence',\n", |
||
| 3522 | " 'id': 'NC_022243.1',\n", |
||
| 3523 | " 'name': 'NC_022243.1'},\n", |
||
| 3524 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000156855.2_ASM15685v2_genomic.fna',\n", |
||
| 3525 | " 'description': 'NC_022240.1 Neisseria gonorrhoeae MS11, complete genome',\n", |
||
| 3526 | " 'id': 'NC_022240.1',\n", |
||
| 3527 | " 'name': 'NC_022240.1'},\n", |
||
| 3528 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000277165.1_ASM27716v1_genomic.fna',\n", |
||
| 3529 | " 'description': 'NC_017049.1 Rickettsia prowazekii str. Chernikova, complete genome',\n", |
||
| 3530 | " 'id': 'NC_017049.1',\n", |
||
| 3531 | " 'name': 'NC_017049.1'},\n", |
||
| 3532 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000522985.1_ASM52298v1_genomic.fna',\n", |
||
| 3533 | " 'description': 'NZ_CP007128.1 Gemmatirosa kalamazoonesis strain KBS708, complete genome',\n", |
||
| 3534 | " 'id': 'NZ_CP007128.1',\n", |
||
| 3535 | " 'name': 'NZ_CP007128.1'},\n", |
||
| 3536 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000522985.1_ASM52298v1_genomic.fna',\n", |
||
| 3537 | " 'description': 'NZ_CP007127.1 Gemmatirosa kalamazoonesis strain KBS708 phage-like extrachromosal element, complete sequence',\n", |
||
| 3538 | " 'id': 'NZ_CP007127.1',\n", |
||
| 3539 | " 'name': 'NZ_CP007127.1'},\n", |
||
| 3540 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002872435.1_ASM287243v1_genomic.fna',\n", |
||
| 3541 | " 'description': 'NZ_CP025696.1 Paenibacillus sp. lzh-N1 chromosome, complete genome',\n", |
||
| 3542 | " 'id': 'NZ_CP025696.1',\n", |
||
| 3543 | " 'name': 'NZ_CP025696.1'},\n", |
||
| 3544 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000093165.1_ASM9316v1_genomic.fna',\n", |
||
| 3545 | " 'description': 'NC_013418.2 Blattabacterium sp. (Periplaneta americana) str. BPLAN, complete genome',\n", |
||
| 3546 | " 'id': 'NC_013418.2',\n", |
||
| 3547 | " 'name': 'NC_013418.2'},\n", |
||
| 3548 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002024185.1_ASM202418v1_genomic.fna',\n", |
||
| 3549 | " 'description': 'NZ_CP019977.1 Campylobacter coli strain aerotolerant OR12, complete genome',\n", |
||
| 3550 | " 'id': 'NZ_CP019977.1',\n", |
||
| 3551 | " 'name': 'NZ_CP019977.1'},\n", |
||
| 3552 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002591215.1_ASM259121v1_genomic.fna',\n", |
||
| 3553 | " 'description': 'NZ_CP023970.1 Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome',\n", |
||
| 3554 | " 'id': 'NZ_CP023970.1',\n", |
||
| 3555 | " 'name': 'NZ_CP023970.1'},\n", |
||
| 3556 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001632865.1_ASM163286v1_genomic.fna',\n", |
||
| 3557 | " 'description': 'NZ_CP012949.1 Streptomyces ambofaciens strain DSM 40697, complete genome',\n", |
||
| 3558 | " 'id': 'NZ_CP012949.1',\n", |
||
| 3559 | " 'name': 'NZ_CP012949.1'},\n", |
||
| 3560 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001887265.1_ASM188726v1_genomic.fna',\n", |
||
| 3561 | " 'description': 'NZ_CP018095.1 Chelatococcus daeguensis strain TAD1, complete genome',\n", |
||
| 3562 | " 'id': 'NZ_CP018095.1',\n", |
||
| 3563 | " 'name': 'NZ_CP018095.1'},\n", |
||
| 3564 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000982715.1_ASM98271v1_genomic.fna',\n", |
||
| 3565 | " 'description': 'NZ_CP011341.1 Rhodococcus aetherivorans strain IcdP1, complete genome',\n", |
||
| 3566 | " 'id': 'NZ_CP011341.1',\n", |
||
| 3567 | " 'name': 'NZ_CP011341.1'},\n", |
||
| 3568 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000830035.1_ASM83003v1_genomic.fna',\n", |
||
| 3569 | " 'description': 'NZ_CP010585.1 Escherichia coli strain C41(DE3), complete genome',\n", |
||
| 3570 | " 'id': 'NZ_CP010585.1',\n", |
||
| 3571 | " 'name': 'NZ_CP010585.1'},\n", |
||
| 3572 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003855335.1_ASM385533v1_genomic.fna',\n", |
||
| 3573 | " 'description': 'NZ_CP034053.1 Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 chromosome, complete genome',\n", |
||
| 3574 | " 'id': 'NZ_CP034053.1',\n", |
||
| 3575 | " 'name': 'NZ_CP034053.1'},\n", |
||
| 3576 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900474825.1_41800_B02_genomic.fna',\n", |
||
| 3577 | " 'description': 'NZ_LS483326.1 Streptococcus pyogenes strain NCTC12045 genome assembly, chromosome: 1',\n", |
||
| 3578 | " 'id': 'NZ_LS483326.1',\n", |
||
| 3579 | " 'name': 'NZ_LS483326.1'},\n", |
||
| 3580 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001729785.1_ASM172978v1_genomic.fna',\n", |
||
| 3581 | " 'description': 'NZ_CP017183.1 Enterobacter xiangfangensis strain LMG27195, complete genome',\n", |
||
| 3582 | " 'id': 'NZ_CP017183.1',\n", |
||
| 3583 | " 'name': 'NZ_CP017183.1'},\n", |
||
| 3584 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002736205.1_ASM273620v1_genomic.fna',\n", |
||
| 3585 | " 'description': 'NZ_CP024091.1 Pedobacter ginsengisoli strain T01R-27 chromosome, complete genome',\n", |
||
| 3586 | " 'id': 'NZ_CP024091.1',\n", |
||
| 3587 | " 'name': 'NZ_CP024091.1'},\n", |
||
| 3588 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000012965.1_ASM1296v1_genomic.fna',\n", |
||
| 3589 | " 'description': 'NC_007575.1 Sulfurimonas denitrificans DSM 1251, complete genome',\n", |
||
| 3590 | " 'id': 'NC_007575.1',\n", |
||
| 3591 | " 'name': 'NC_007575.1'},\n", |
||
| 3592 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003726935.1_ASM372693v1_genomic.fna',\n", |
||
| 3593 | " 'description': 'NZ_CP033577.1 Vibrio mediterranei strain 117-T6 chromosome 1, complete sequence',\n", |
||
| 3594 | " 'id': 'NZ_CP033577.1',\n", |
||
| 3595 | " 'name': 'NZ_CP033577.1'},\n", |
||
| 3596 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003726935.1_ASM372693v1_genomic.fna',\n", |
||
| 3597 | " 'description': 'NZ_CP033578.1 Vibrio mediterranei strain 117-T6 chromosome 2, complete sequence',\n", |
||
| 3598 | " 'id': 'NZ_CP033578.1',\n", |
||
| 3599 | " 'name': 'NZ_CP033578.1'},\n", |
||
| 3600 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002234455.1_ASM223445v1_genomic.fna',\n", |
||
| 3601 | " 'description': 'NZ_CP022470.1 Campylobacter jejuni strain RM1246-ERRC chromosome, complete genome',\n", |
||
| 3602 | " 'id': 'NZ_CP022470.1',\n", |
||
| 3603 | " 'name': 'NZ_CP022470.1'},\n", |
||
| 3604 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001986715.1_ASM198671v1_genomic.fna',\n", |
||
| 3605 | " 'description': 'NZ_CP011703.1 Bordetella pertussis strain H779, complete genome',\n", |
||
| 3606 | " 'id': 'NZ_CP011703.1',\n", |
||
| 3607 | " 'name': 'NZ_CP011703.1'},\n", |
||
| 3608 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002208135.1_ASM220813v1_genomic.fna',\n", |
||
| 3609 | " 'description': 'NZ_CP021646.1 Pseudoalteromonas piscicida strain DE2-B chromosome 1, complete sequence',\n", |
||
| 3610 | " 'id': 'NZ_CP021646.1',\n", |
||
| 3611 | " 'name': 'NZ_CP021646.1'},\n", |
||
| 3612 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002208135.1_ASM220813v1_genomic.fna',\n", |
||
| 3613 | " 'description': 'NZ_CP021647.1 Pseudoalteromonas piscicida strain DE2-B chromosome 2, complete sequence',\n", |
||
| 3614 | " 'id': 'NZ_CP021647.1',\n", |
||
| 3615 | " 'name': 'NZ_CP021647.1'},\n", |
||
| 3616 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001985125.1_ASM198512v1_genomic.fna',\n", |
||
| 3617 | " 'description': 'NZ_CP011177.1 Bordetella pertussis strain F034, complete genome',\n", |
||
| 3618 | " 'id': 'NZ_CP011177.1',\n", |
||
| 3619 | " 'name': 'NZ_CP011177.1'},\n", |
||
| 3620 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002346145.1_ASM234614v1_genomic.fna',\n", |
||
| 3621 | " 'description': 'NZ_CP009737.1 Burkholderia mallei strain Turkey7 chromosome 1, complete sequence',\n", |
||
| 3622 | " 'id': 'NZ_CP009737.1',\n", |
||
| 3623 | " 'name': 'NZ_CP009737.1'},\n", |
||
| 3624 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002346145.1_ASM234614v1_genomic.fna',\n", |
||
| 3625 | " 'description': 'NZ_CP009738.1 Burkholderia mallei strain Turkey7 chromosome 2, complete sequence',\n", |
||
| 3626 | " 'id': 'NZ_CP009738.1',\n", |
||
| 3627 | " 'name': 'NZ_CP009738.1'},\n", |
||
| 3628 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000974685.2_FaOYT1_2.0_genomic.fna',\n", |
||
| 3629 | " 'description': 'NZ_AP018738.1 Ferriphaselus amnicola OYT1 DNA, complete genome',\n", |
||
| 3630 | " 'id': 'NZ_AP018738.1',\n", |
||
| 3631 | " 'name': 'NZ_AP018738.1'},\n", |
||
| 3632 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000746585.1_ASM74658v2_genomic.fna',\n", |
||
| 3633 | " 'description': 'NZ_CP009217.1 Rickettsiales bacterium Ac37b, complete genome',\n", |
||
| 3634 | " 'id': 'NZ_CP009217.1',\n", |
||
| 3635 | " 'name': 'NZ_CP009217.1'},\n", |
||
| 3636 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002447035.1_ASM244703v1_genomic.fna',\n", |
||
| 3637 | " 'description': 'NZ_CP023581.1 Mycobacterium tuberculosis strain LN2358 chromosome, complete genome',\n", |
||
| 3638 | " 'id': 'NZ_CP023581.1',\n", |
||
| 3639 | " 'name': 'NZ_CP023581.1'},\n", |
||
| 3640 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000255235.1_ASM25523v1_genomic.fna',\n", |
||
| 3641 | " 'description': 'NC_016786.1 Corynebacterium diphtheriae HC01, complete genome',\n", |
||
| 3642 | " 'id': 'NC_016786.1',\n", |
||
| 3643 | " 'name': 'NC_016786.1'},\n", |
||
| 3644 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001975955.2_ASM197595v2_genomic.fna',\n", |
||
| 3645 | " 'description': 'NZ_CP031421.1 Microbacterium oleivorans strain A9 chromosome, complete genome',\n", |
||
| 3646 | " 'id': 'NZ_CP031421.1',\n", |
||
| 3647 | " 'name': 'NZ_CP031421.1'},\n", |
||
| 3648 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900478095.1_31289_D01_genomic.fna',\n", |
||
| 3649 | " 'description': 'NZ_LS483467.1 Providencia alcalifaciens strain NCTC10286 genome assembly, chromosome: 1',\n", |
||
| 3650 | " 'id': 'NZ_LS483467.1',\n", |
||
| 3651 | " 'name': 'NZ_LS483467.1'},\n", |
||
| 3652 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001605485.1_ASM160548v1_genomic.fna',\n", |
||
| 3653 | " 'description': 'NZ_CP010256.1 Bordetella pertussis strain I483, complete genome',\n", |
||
| 3654 | " 'id': 'NZ_CP010256.1',\n", |
||
| 3655 | " 'name': 'NZ_CP010256.1'},\n", |
||
| 3656 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002706795.1_ASM270679v1_genomic.fna',\n", |
||
| 3657 | " 'description': 'NZ_CP017705.1 Brevibacillus laterosporus DSM 25, complete genome',\n", |
||
| 3658 | " 'id': 'NZ_CP017705.1',\n", |
||
| 3659 | " 'name': 'NZ_CP017705.1'},\n", |
||
| 3660 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002943995.1_ASM294399v1_genomic.fna',\n", |
||
| 3661 | " 'description': 'NZ_CP014062.1 Pseudomonas monteilii strain FDAARGOS_171 chromosome, complete genome',\n", |
||
| 3662 | " 'id': 'NZ_CP014062.1',\n", |
||
| 3663 | " 'name': 'NZ_CP014062.1'},\n", |
||
| 3664 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000310085.1_ASM31008v1_genomic.fna',\n", |
||
| 3665 | " 'description': 'NC_019393.1 Alteromonas mediterranea DE1, complete genome',\n", |
||
| 3666 | " 'id': 'NC_019393.1',\n", |
||
| 3667 | " 'name': 'NC_019393.1'},\n", |
||
| 3668 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002285675.1_ASM228567v1_genomic.fna',\n", |
||
| 3669 | " 'description': 'NZ_CP023149.1 Mycobacterium intracellulare strain FLAC0181 chromosome, complete genome',\n", |
||
| 3670 | " 'id': 'NZ_CP023149.1',\n", |
||
| 3671 | " 'name': 'NZ_CP023149.1'},\n", |
||
| 3672 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000196555.1_ASM19655v1_genomic.fna',\n", |
||
| 3673 | " 'description': 'NC_015067.1 Bifidobacterium longum subsp. longum JCM 1217 DNA, complete genome',\n", |
||
| 3674 | " 'id': 'NC_015067.1',\n", |
||
| 3675 | " 'name': 'NC_015067.1'},\n", |
||
| 3676 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001831495.1_ASM183149v1_genomic.fna',\n", |
||
| 3677 | " 'description': 'NZ_CP017689.1 Thalassotalea crassostreae strain LPB0090, complete genome',\n", |
||
| 3678 | " 'id': 'NZ_CP017689.1',\n", |
||
| 3679 | " 'name': 'NZ_CP017689.1'},\n", |
||
| 3680 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001715535.1_ASM171553v1_genomic.fna',\n", |
||
| 3681 | " 'description': 'NZ_CP017015.1 Spiroplasma helicoides strain TABS-2 chromosome, complete genome',\n", |
||
| 3682 | " 'id': 'NZ_CP017015.1',\n", |
||
| 3683 | " 'name': 'NZ_CP017015.1'},\n", |
||
| 3684 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900324065.1_24117-SCV_genomic.fna',\n", |
||
| 3685 | " 'description': 'NZ_LT996890.1 Staphylococcus aureus isolate 24117-SCV genome assembly, chromosome: I',\n", |
||
| 3686 | " 'id': 'NZ_LT996890.1',\n", |
||
| 3687 | " 'name': 'NZ_LT996890.1'},\n", |
||
| 3688 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000941075.1_ASM94107v1_genomic.fna',\n", |
||
| 3689 | " 'description': 'NZ_CP007229.1 Mycoplasma dispar strain ATCC 27140, complete genome',\n", |
||
| 3690 | " 'id': 'NZ_CP007229.1',\n", |
||
| 3691 | " 'name': 'NZ_CP007229.1'},\n", |
||
| 3692 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001951075.2_ASM195107v2_genomic.fna',\n", |
||
| 3693 | " 'description': 'NZ_CP013936.1 Weissella cibaria strain CMU, complete genome',\n", |
||
| 3694 | " 'id': 'NZ_CP013936.1',\n", |
||
| 3695 | " 'name': 'NZ_CP013936.1'},\n", |
||
| 3696 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001901085.1_ASM190108v1_genomic.fna',\n", |
||
| 3697 | " 'description': 'NZ_CP010191.1 Escherichia coli strain M8, complete genome',\n", |
||
| 3698 | " 'id': 'NZ_CP010191.1',\n", |
||
| 3699 | " 'name': 'NZ_CP010191.1'},\n", |
||
| 3700 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002736045.1_ASM273604v1_genomic.fna',\n", |
||
| 3701 | " 'description': 'NZ_CP024086.1 Pseudomonas putida strain E46 chromosome, complete genome',\n", |
||
| 3702 | " 'id': 'NZ_CP024086.1',\n", |
||
| 3703 | " 'name': 'NZ_CP024086.1'},\n", |
||
| 3704 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002262975.1_ASM226297v1_genomic.fna',\n", |
||
| 3705 | " 'description': 'NZ_CP022877.1 Brucella abortus strain BD chromosome 1, complete sequence',\n", |
||
| 3706 | " 'id': 'NZ_CP022877.1',\n", |
||
| 3707 | " 'name': 'NZ_CP022877.1'},\n", |
||
| 3708 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002262975.1_ASM226297v1_genomic.fna',\n", |
||
| 3709 | " 'description': 'NZ_CP022878.1 Brucella abortus strain BD chromosome 2, complete sequence',\n", |
||
| 3710 | " 'id': 'NZ_CP022878.1',\n", |
||
| 3711 | " 'name': 'NZ_CP022878.1'},\n", |
||
| 3712 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003030105.1_ASM303010v1_genomic.fna',\n", |
||
| 3713 | " 'description': 'NZ_CP028169.1 Salmonella enterica strain CFSAN064034 chromosome, complete genome',\n", |
||
| 3714 | " 'id': 'NZ_CP028169.1',\n", |
||
| 3715 | " 'name': 'NZ_CP028169.1'},\n", |
||
| 3716 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002240135.1_ASM224013v1_genomic.fna',\n", |
||
| 3717 | " 'description': 'NZ_CP020086.1 Shigella flexneri 1a strain 0670 chromosome, complete genome',\n", |
||
| 3718 | " 'id': 'NZ_CP020086.1',\n", |
||
| 3719 | " 'name': 'NZ_CP020086.1'},\n", |
||
| 3720 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003443635.1_ASM344363v1_genomic.fna',\n", |
||
| 3721 | " 'description': 'NZ_CP031964.1 Flavobacteriaceae bacterium strain AU392 chromosome, complete genome',\n", |
||
| 3722 | " 'id': 'NZ_CP031964.1',\n", |
||
| 3723 | " 'name': 'NZ_CP031964.1'},\n", |
||
| 3724 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002249955.1_ASM224995v1_genomic.fna',\n", |
||
| 3725 | " 'description': 'NZ_CP022689.1 Escherichia coli strain CDC#03-98 chromosome, complete genome',\n", |
||
| 3726 | " 'id': 'NZ_CP022689.1',\n", |
||
| 3727 | " 'name': 'NZ_CP022689.1'},\n", |
||
| 3728 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000217795.1_ASM21779v1_genomic.fna',\n", |
||
| 3729 | " 'description': 'NC_015681.1 Thermodesulfatator indicus DSM 15286, complete genome',\n", |
||
| 3730 | " 'id': 'NC_015681.1',\n", |
||
| 3731 | " 'name': 'NC_015681.1'},\n", |
||
| 3732 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001634305.1_ASM163430v1_genomic.fna',\n", |
||
| 3733 | " 'description': 'NZ_CP015436.1 Anoxybacillus sp. B7M1 chromosome, complete genome',\n", |
||
| 3734 | " 'id': 'NZ_CP015436.1',\n", |
||
| 3735 | " 'name': 'NZ_CP015436.1'},\n", |
||
| 3736 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003367905.1_ASM336790v1_genomic.fna',\n", |
||
| 3737 | " 'description': 'NZ_CP029462.1 Megasphaera stantonii strain AJH120 chromosome, complete genome',\n", |
||
| 3738 | " 'id': 'NZ_CP029462.1',\n", |
||
| 3739 | " 'name': 'NZ_CP029462.1'},\n", |
||
| 3740 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002139855.1_ASM213985v1_genomic.fna',\n", |
||
| 3741 | " 'description': 'NZ_CP018789.1 Campylobacter sp. RM6137, complete genome',\n", |
||
| 3742 | " 'id': 'NZ_CP018789.1',\n", |
||
| 3743 | " 'name': 'NZ_CP018789.1'},\n", |
||
| 3744 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3745 | " 'description': 'NZ_LR214974.1 Mycoplasma cynos strain NCTC10142 genome assembly, chromosome: 1',\n", |
||
| 3746 | " 'id': 'NZ_LR214974.1',\n", |
||
| 3747 | " 'name': 'NZ_LR214974.1'},\n", |
||
| 3748 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3749 | " 'description': 'NZ_LR214975.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 2',\n", |
||
| 3750 | " 'id': 'NZ_LR214975.1',\n", |
||
| 3751 | " 'name': 'NZ_LR214975.1'},\n", |
||
| 3752 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3753 | " 'description': 'NZ_LR214976.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 3',\n", |
||
| 3754 | " 'id': 'NZ_LR214976.1',\n", |
||
| 3755 | " 'name': 'NZ_LR214976.1'},\n", |
||
| 3756 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3757 | " 'description': 'NZ_LR214977.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 4',\n", |
||
| 3758 | " 'id': 'NZ_LR214977.1',\n", |
||
| 3759 | " 'name': 'NZ_LR214977.1'},\n", |
||
| 3760 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3761 | " 'description': 'NZ_LR214978.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 5',\n", |
||
| 3762 | " 'id': 'NZ_LR214978.1',\n", |
||
| 3763 | " 'name': 'NZ_LR214978.1'},\n", |
||
| 3764 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3765 | " 'description': 'NZ_LR214979.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 6',\n", |
||
| 3766 | " 'id': 'NZ_LR214979.1',\n", |
||
| 3767 | " 'name': 'NZ_LR214979.1'},\n", |
||
| 3768 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3769 | " 'description': 'NZ_LR214980.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 7',\n", |
||
| 3770 | " 'id': 'NZ_LR214980.1',\n", |
||
| 3771 | " 'name': 'NZ_LR214980.1'},\n", |
||
| 3772 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3773 | " 'description': 'NZ_LR214981.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 8',\n", |
||
| 3774 | " 'id': 'NZ_LR214981.1',\n", |
||
| 3775 | " 'name': 'NZ_LR214981.1'},\n", |
||
| 3776 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3777 | " 'description': 'NZ_LR214982.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 9',\n", |
||
| 3778 | " 'id': 'NZ_LR214982.1',\n", |
||
| 3779 | " 'name': 'NZ_LR214982.1'},\n", |
||
| 3780 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3781 | " 'description': 'NZ_LR214983.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 10',\n", |
||
| 3782 | " 'id': 'NZ_LR214983.1',\n", |
||
| 3783 | " 'name': 'NZ_LR214983.1'},\n", |
||
| 3784 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3785 | " 'description': 'NZ_LR214984.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 11',\n", |
||
| 3786 | " 'id': 'NZ_LR214984.1',\n", |
||
| 3787 | " 'name': 'NZ_LR214984.1'},\n", |
||
| 3788 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3789 | " 'description': 'NZ_LR214985.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 12',\n", |
||
| 3790 | " 'id': 'NZ_LR214985.1',\n", |
||
| 3791 | " 'name': 'NZ_LR214985.1'},\n", |
||
| 3792 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3793 | " 'description': 'NZ_LR214986.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 13',\n", |
||
| 3794 | " 'id': 'NZ_LR214986.1',\n", |
||
| 3795 | " 'name': 'NZ_LR214986.1'},\n", |
||
| 3796 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3797 | " 'description': 'NZ_LR214987.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 14',\n", |
||
| 3798 | " 'id': 'NZ_LR214987.1',\n", |
||
| 3799 | " 'name': 'NZ_LR214987.1'},\n", |
||
| 3800 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3801 | " 'description': 'NZ_LR214988.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 15',\n", |
||
| 3802 | " 'id': 'NZ_LR214988.1',\n", |
||
| 3803 | " 'name': 'NZ_LR214988.1'},\n", |
||
| 3804 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3805 | " 'description': 'NZ_LR214989.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 16',\n", |
||
| 3806 | " 'id': 'NZ_LR214989.1',\n", |
||
| 3807 | " 'name': 'NZ_LR214989.1'},\n", |
||
| 3808 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3809 | " 'description': 'NZ_LR214990.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 17',\n", |
||
| 3810 | " 'id': 'NZ_LR214990.1',\n", |
||
| 3811 | " 'name': 'NZ_LR214990.1'},\n", |
||
| 3812 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660545.1_50884_C01-3_genomic.fna',\n", |
||
| 3813 | " 'description': 'NZ_LR214991.1 Mycoplasma cynos strain NCTC10142 genome assembly, plasmid: 18',\n", |
||
| 3814 | " 'id': 'NZ_LR214991.1',\n", |
||
| 3815 | " 'name': 'NZ_LR214991.1'},\n", |
||
| 3816 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003073375.1_ASM307337v1_genomic.fna',\n", |
||
| 3817 | " 'description': 'NZ_CP029002.1 Lysinibacillus sp. 2017 chromosome, complete genome',\n", |
||
| 3818 | " 'id': 'NZ_CP029002.1',\n", |
||
| 3819 | " 'name': 'NZ_CP029002.1'},\n", |
||
| 3820 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000769635.1_ASM76963v1_genomic.fna',\n", |
||
| 3821 | " 'description': 'NZ_CP009716.1 Corynebacterium ulcerans strain 05146, complete genome',\n", |
||
| 3822 | " 'id': 'NZ_CP009716.1',\n", |
||
| 3823 | " 'name': 'NZ_CP009716.1'},\n", |
||
| 3824 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002741725.1_ASM274172v1_genomic.fna',\n", |
||
| 3825 | " 'description': 'NZ_CP024315.1 Rhodococcus ruber strain P14 chromosome, complete genome',\n", |
||
| 3826 | " 'id': 'NZ_CP024315.1',\n", |
||
| 3827 | " 'name': 'NZ_CP024315.1'},\n", |
||
| 3828 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000146975.1_ASM14697v1_genomic.fna',\n", |
||
| 3829 | " 'description': 'NC_014494.1 Streptococcus pneumoniae AP200, complete genome',\n", |
||
| 3830 | " 'id': 'NC_014494.1',\n", |
||
| 3831 | " 'name': 'NC_014494.1'},\n", |
||
| 3832 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002192355.1_ASM219235v1_genomic.fna',\n", |
||
| 3833 | " 'description': 'NZ_CP021749.1 Enterobacter cloacae strain AR_0163, complete genome',\n", |
||
| 3834 | " 'id': 'NZ_CP021749.1',\n", |
||
| 3835 | " 'name': 'NZ_CP021749.1'},\n", |
||
| 3836 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004008295.1_ASM400829v1_genomic.fna',\n", |
||
| 3837 | " 'description': 'NZ_CP025070.1 Bordetella parapertussis strain A005 chromosome, complete genome',\n", |
||
| 3838 | " 'id': 'NZ_CP025070.1',\n", |
||
| 3839 | " 'name': 'NZ_CP025070.1'},\n", |
||
| 3840 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002847385.1_ASM284738v1_genomic.fna',\n", |
||
| 3841 | " 'description': 'NZ_CP025298.1 Stenotrophomonas maltophilia strain CSM2 chromosome, complete genome',\n", |
||
| 3842 | " 'id': 'NZ_CP025298.1',\n", |
||
| 3843 | " 'name': 'NZ_CP025298.1'},\n", |
||
| 3844 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000190535.1_ASM19053v1_genomic.fna',\n", |
||
| 3845 | " 'description': 'NC_015160.1 Odoribacter splanchnicus DSM 20712, complete genome',\n", |
||
| 3846 | " 'id': 'NC_015160.1',\n", |
||
| 3847 | " 'name': 'NC_015160.1'},\n", |
||
| 3848 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000962775.1_ASM96277v1_genomic.fna',\n", |
||
| 3849 | " 'description': 'NZ_CP009058.1 Borrelia afzelii K78, complete genome',\n", |
||
| 3850 | " 'id': 'NZ_CP009058.1',\n", |
||
| 3851 | " 'name': 'NZ_CP009058.1'},\n", |
||
| 3852 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001676785.2_ASM167678v2_genomic.fna',\n", |
||
| 3853 | " 'description': 'NZ_CP015910.2 Brachyspira hyodysenteriae ATCC 27164, complete genome',\n", |
||
| 3854 | " 'id': 'NZ_CP015910.2',\n", |
||
| 3855 | " 'name': 'NZ_CP015910.2'},\n", |
||
| 3856 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000277145.1_ASM27714v1_genomic.fna',\n", |
||
| 3857 | " 'description': 'NC_016947.1 Mycobacterium intracellulare MOTT-02, complete genome',\n", |
||
| 3858 | " 'id': 'NC_016947.1',\n", |
||
| 3859 | " 'name': 'NC_016947.1'},\n", |
||
| 3860 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003233695.1_ASM323369v1_genomic.fna',\n", |
||
| 3861 | " 'description': 'NZ_CP029843.1 Lysobacter maris strain HZ9B chromosome, complete genome',\n", |
||
| 3862 | " 'id': 'NZ_CP029843.1',\n", |
||
| 3863 | " 'name': 'NZ_CP029843.1'},\n", |
||
| 3864 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001644705.1_ASM164470v1_genomic.fna',\n", |
||
| 3865 | " 'description': 'NZ_CP015137.1 Dickeya solani IPO 2222, complete genome',\n", |
||
| 3866 | " 'id': 'NZ_CP015137.1',\n", |
||
| 3867 | " 'name': 'NZ_CP015137.1'},\n", |
||
| 3868 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001644725.1_ASM164472v1_genomic.fna',\n", |
||
| 3869 | " 'description': 'NZ_CP015240.1 Escherichia coli strain 2011C-3911, complete genome',\n", |
||
| 3870 | " 'id': 'NZ_CP015240.1',\n", |
||
| 3871 | " 'name': 'NZ_CP015240.1'},\n", |
||
| 3872 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002804105.1_ASM280410v1_genomic.fna',\n", |
||
| 3873 | " 'description': 'NZ_CP024964.1 Entomoplasma melaleucae strain M1 chromosome, complete genome',\n", |
||
| 3874 | " 'id': 'NZ_CP024964.1',\n", |
||
| 3875 | " 'name': 'NZ_CP024964.1'},\n", |
||
| 3876 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003264815.1_ASM326481v1_genomic.fna',\n", |
||
| 3877 | " 'description': 'NZ_CP027788.1 Staphylococcus aureus strain CMRSA-6 chromosome, complete genome',\n", |
||
| 3878 | " 'id': 'NZ_CP027788.1',\n", |
||
| 3879 | " 'name': 'NZ_CP027788.1'},\n", |
||
| 3880 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000212715.2_ASM21271v2_genomic.fna',\n", |
||
| 3881 | " 'description': 'NC_017641.1 Escherichia coli UMNK88, complete genome',\n", |
||
| 3882 | " 'id': 'NC_017641.1',\n", |
||
| 3883 | " 'name': 'NC_017641.1'},\n", |
||
| 3884 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001998945.1_ASM199894v1_genomic.fna',\n", |
||
| 3885 | " 'description': 'NZ_CP019615.1 Listeria monocytogenes strain 10-092876-0168, complete genome',\n", |
||
| 3886 | " 'id': 'NZ_CP019615.1',\n", |
||
| 3887 | " 'name': 'NZ_CP019615.1'},\n", |
||
| 3888 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002285975.1_ASM228597v1_genomic.fna',\n", |
||
| 3889 | " 'description': 'NZ_CP016957.1 Bordetella pertussis strain B226, complete genome',\n", |
||
| 3890 | " 'id': 'NZ_CP016957.1',\n", |
||
| 3891 | " 'name': 'NZ_CP016957.1'},\n", |
||
| 3892 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001483445.1_ASM148344v1_genomic.fna',\n", |
||
| 3893 | " 'description': 'NZ_CP013724.1 Listeria monocytogenes strain Lm N1546, complete genome',\n", |
||
| 3894 | " 'id': 'NZ_CP013724.1',\n", |
||
| 3895 | " 'name': 'NZ_CP013724.1'},\n", |
||
| 3896 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900096755.1_Fsp1.4_chr_genomic.fna',\n", |
||
| 3897 | " 'description': 'NZ_LT615227.1 Polynucleobacter necessarius isolate PPGSP8 genome assembly, chromosome: I',\n", |
||
| 3898 | " 'id': 'NZ_LT615227.1',\n", |
||
| 3899 | " 'name': 'NZ_LT615227.1'},\n", |
||
| 3900 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004564115.1_ASM456411v1_genomic.fna',\n", |
||
| 3901 | " 'description': 'NZ_CP038258.1 Acinetobacter baumannii strain EH chromosome, complete genome',\n", |
||
| 3902 | " 'id': 'NZ_CP038258.1',\n", |
||
| 3903 | " 'name': 'NZ_CP038258.1'},\n", |
||
| 3904 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900497045.1_ASM90049704v1_genomic.fna',\n", |
||
| 3905 | " 'description': 'NZ_LR025088.1 Klebsiella pneumoniae isolate KP980 genome assembly, chromosome: 1',\n", |
||
| 3906 | " 'id': 'NZ_LR025088.1',\n", |
||
| 3907 | " 'name': 'NZ_LR025088.1'},\n", |
||
| 3908 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900497045.1_ASM90049704v1_genomic.fna',\n", |
||
| 3909 | " 'description': 'NZ_LR025089.1 Klebsiella pneumoniae isolate KP980 genome assembly, plasmid: 2',\n", |
||
| 3910 | " 'id': 'NZ_LR025089.1',\n", |
||
| 3911 | " 'name': 'NZ_LR025089.1'},\n", |
||
| 3912 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900497045.1_ASM90049704v1_genomic.fna',\n", |
||
| 3913 | " 'description': 'NZ_LR025090.1 Klebsiella pneumoniae isolate KP980 genome assembly, plasmid: 4',\n", |
||
| 3914 | " 'id': 'NZ_LR025090.1',\n", |
||
| 3915 | " 'name': 'NZ_LR025090.1'},\n", |
||
| 3916 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900497045.1_ASM90049704v1_genomic.fna',\n", |
||
| 3917 | " 'description': 'NZ_LR025091.1 Klebsiella pneumoniae isolate KP980 genome assembly, plasmid: pOXA-48_980',\n", |
||
| 3918 | " 'id': 'NZ_LR025091.1',\n", |
||
| 3919 | " 'name': 'NZ_LR025091.1'},\n", |
||
| 3920 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900198195.1_Tjejuense_V1_genomic.fna',\n", |
||
| 3921 | " 'description': 'NZ_LT899436.1 Tenacibaculum jejuense strain KCTC 22618(T) genome assembly, chromosome: TJEJU',\n", |
||
| 3922 | " 'id': 'NZ_LT899436.1',\n", |
||
| 3923 | " 'name': 'NZ_LT899436.1'},\n", |
||
| 3924 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002752715.1_ASM275271v1_genomic.fna',\n", |
||
| 3925 | " 'description': 'NZ_CP024455.1 Chlamydia psittaci strain GIMC 2004:CpsAP23 chromosome, complete genome',\n", |
||
| 3926 | " 'id': 'NZ_CP024455.1',\n", |
||
| 3927 | " 'name': 'NZ_CP024455.1'},\n", |
||
| 3928 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003595645.1_ASM359564v1_genomic.fna',\n", |
||
| 3929 | " 'description': 'NZ_CP032446.1 Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 chromosome, complete genome',\n", |
||
| 3930 | " 'id': 'NZ_CP032446.1',\n", |
||
| 3931 | " 'name': 'NZ_CP032446.1'},\n", |
||
| 3932 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000582515.1_ASM58251v1_genomic.fna',\n", |
||
| 3933 | " 'description': 'NZ_CP007230.1 Yersinia similis strain 228, complete genome',\n", |
||
| 3934 | " 'id': 'NZ_CP007230.1',\n", |
||
| 3935 | " 'name': 'NZ_CP007230.1'},\n", |
||
| 3936 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000582515.1_ASM58251v1_genomic.fna',\n", |
||
| 3937 | " 'description': 'NZ_CP007231.1 Yersinia similis strain 228 plasmid, complete sequence',\n", |
||
| 3938 | " 'id': 'NZ_CP007231.1',\n", |
||
| 3939 | " 'name': 'NZ_CP007231.1'},\n", |
||
| 3940 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000829035.1_ASM82903v1_genomic.fna',\n", |
||
| 3941 | " 'description': 'NZ_AP012541.1 Lactobacillus paracasei subsp. paracasei JCM 8130 DNA, complete genome',\n", |
||
| 3942 | " 'id': 'NZ_AP012541.1',\n", |
||
| 3943 | " 'name': 'NZ_AP012541.1'},\n", |
||
| 3944 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003860585.1_ASM386058v1_genomic.fna',\n", |
||
| 3945 | " 'description': 'NZ_CP034159.1 Chryseobacterium carnis strain G0081 chromosome, complete genome',\n", |
||
| 3946 | " 'id': 'NZ_CP034159.1',\n", |
||
| 3947 | " 'name': 'NZ_CP034159.1'},\n", |
||
| 3948 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001008165.2_ASM100816v2_genomic.fna',\n", |
||
| 3949 | " 'description': 'NZ_CP011452.2 Altererythrobacter atlanticus strain 26DY36, complete genome',\n", |
||
| 3950 | " 'id': 'NZ_CP011452.2',\n", |
||
| 3951 | " 'name': 'NZ_CP011452.2'},\n", |
||
| 3952 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001008165.2_ASM100816v2_genomic.fna',\n", |
||
| 3953 | " 'description': 'NZ_CP011453.2 Altererythrobacter atlanticus strain 26DY36 plasmid, complete sequence',\n", |
||
| 3954 | " 'id': 'NZ_CP011453.2',\n", |
||
| 3955 | " 'name': 'NZ_CP011453.2'},\n", |
||
| 3956 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000734055.1_ASM73405v1_genomic.fna',\n", |
||
| 3957 | " 'description': 'NZ_CP006649.1 Riemerella anatipestifer CH3, complete genome',\n", |
||
| 3958 | " 'id': 'NZ_CP006649.1',\n", |
||
| 3959 | " 'name': 'NZ_CP006649.1'},\n", |
||
| 3960 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900184385.1_STMU2UK_genomic.fna',\n", |
||
| 3961 | " 'description': 'NZ_LT855376.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK genome assembly, chromosome: 1',\n", |
||
| 3962 | " 'id': 'NZ_LT855376.1',\n", |
||
| 3963 | " 'name': 'NZ_LT855376.1'},\n", |
||
| 3964 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900184385.1_STMU2UK_genomic.fna',\n", |
||
| 3965 | " 'description': 'NZ_LT855377.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STMU2UK genome assembly, plasmid: 2',\n", |
||
| 3966 | " 'id': 'NZ_LT855377.1',\n", |
||
| 3967 | " 'name': 'NZ_LT855377.1'},\n", |
||
| 3968 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000695835.1_ASM69583v1_genomic.fna',\n", |
||
| 3969 | " 'description': 'NZ_CP007521.1 Mycoplasma californicum strain ST-6, complete genome',\n", |
||
| 3970 | " 'id': 'NZ_CP007521.1',\n", |
||
| 3971 | " 'name': 'NZ_CP007521.1'},\n", |
||
| 3972 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003004275.1_ASM300427v1_genomic.fna',\n", |
||
| 3973 | " 'description': 'NZ_CP021281.1 Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) chromosome, complete genome',\n", |
||
| 3974 | " 'id': 'NZ_CP021281.1',\n", |
||
| 3975 | " 'name': 'NZ_CP021281.1'},\n", |
||
| 3976 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003956385.1_ASM395638v1_genomic.fna',\n", |
||
| 3977 | " 'description': 'NZ_CP025849.1 Escherichia coli strain 600468 chromosome, complete genome',\n", |
||
| 3978 | " 'id': 'NZ_CP025849.1',\n", |
||
| 3979 | " 'name': 'NZ_CP025849.1'},\n", |
||
| 3980 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000271405.2_ASM27140v2_genomic.fna',\n", |
||
| 3981 | " 'description': 'NC_018081.1 Enterococcus hirae ATCC 9790, complete genome',\n", |
||
| 3982 | " 'id': 'NC_018081.1',\n", |
||
| 3983 | " 'name': 'NC_018081.1'},\n", |
||
| 3984 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002105675.1_ASM210567v1_genomic.fna',\n", |
||
| 3985 | " 'description': 'NZ_CP020831.1 Listeria monocytogenes strain PNUSAL000144 chromosome, complete genome',\n", |
||
| 3986 | " 'id': 'NZ_CP020831.1',\n", |
||
| 3987 | " 'name': 'NZ_CP020831.1'},\n", |
||
| 3988 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001653475.1_ASM165347v1_genomic.fna',\n", |
||
| 3989 | " 'description': 'NZ_CP011487.1 Helicobacter pylori strain PNG84A, complete genome',\n", |
||
| 3990 | " 'id': 'NZ_CP011487.1',\n", |
||
| 3991 | " 'name': 'NZ_CP011487.1'},\n", |
||
| 3992 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003342755.1_ASM334275v1_genomic.fna',\n", |
||
| 3993 | " 'description': 'NZ_CP031145.1 Intrasporangium calvum strain C5 chromosome, complete genome',\n", |
||
| 3994 | " 'id': 'NZ_CP031145.1',\n", |
||
| 3995 | " 'name': 'NZ_CP031145.1'},\n", |
||
| 3996 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002209005.1_ASM220900v1_genomic.fna',\n", |
||
| 3997 | " 'description': 'NZ_CP022076.1 Campylobacter jejuni subsp. jejuni strain FDAARGOS_262 chromosome, complete genome',\n", |
||
| 3998 | " 'id': 'NZ_CP022076.1',\n", |
||
| 3999 | " 'name': 'NZ_CP022076.1'},\n", |
||
| 4000 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002999035.1_ASM299903v1_genomic.fna',\n", |
||
| 4001 | " 'description': 'NZ_CP027241.1 Lachnospiraceae bacterium oral taxon 500 strain W11650 chromosome, complete genome',\n", |
||
| 4002 | " 'id': 'NZ_CP027241.1',\n", |
||
| 4003 | " 'name': 'NZ_CP027241.1'},\n", |
||
| 4004 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003431845.1_ASM343184v1_genomic.fna',\n", |
||
| 4005 | " 'description': 'NZ_CP021872.1 Borrelia miyamotoi strain CA17-2241 chromosome, complete genome',\n", |
||
| 4006 | " 'id': 'NZ_CP021872.1',\n", |
||
| 4007 | " 'name': 'NZ_CP021872.1'},\n", |
||
| 4008 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900683635.1_54424_D01_genomic.fna',\n", |
||
| 4009 | " 'description': 'NZ_LR215973.1 Nocardia cyriacigeorgica strain 3012STDY6756504 genome assembly, chromosome: 1',\n", |
||
| 4010 | " 'id': 'NZ_LR215973.1',\n", |
||
| 4011 | " 'name': 'NZ_LR215973.1'},\n", |
||
| 4012 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000213635.1_ASM21363v1_genomic.fna',\n", |
||
| 4013 | " 'description': 'NC_016863.1 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete genome',\n", |
||
| 4014 | " 'id': 'NC_016863.1',\n", |
||
| 4015 | " 'name': 'NC_016863.1'},\n", |
||
| 4016 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002838305.1_ASM283830v1_genomic.fna',\n", |
||
| 4017 | " 'description': 'NZ_CP021388.1 Bifidobacterium breve strain NRBB11 chromosome, complete genome',\n", |
||
| 4018 | " 'id': 'NZ_CP021388.1',\n", |
||
| 4019 | " 'name': 'NZ_CP021388.1'},\n", |
||
| 4020 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002055765.1_ASM205576v1_genomic.fna',\n", |
||
| 4021 | " 'description': 'NZ_CP020061.1 Klebsiella pneumoniae strain AR_0117, complete genome',\n", |
||
| 4022 | " 'id': 'NZ_CP020061.1',\n", |
||
| 4023 | " 'name': 'NZ_CP020061.1'},\n", |
||
| 4024 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000568815.1_ASM56881v1_genomic.fna',\n", |
||
| 4025 | " 'description': 'NZ_CP007201.1 Sulfurospirillum multivorans DSM 12446, complete genome',\n", |
||
| 4026 | " 'id': 'NZ_CP007201.1',\n", |
||
| 4027 | " 'name': 'NZ_CP007201.1'},\n", |
||
| 4028 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000006765.1_ASM676v1_genomic.fna',\n", |
||
| 4029 | " 'description': 'NC_002516.2 Pseudomonas aeruginosa PAO1, complete genome',\n", |
||
| 4030 | " 'id': 'NC_002516.2',\n", |
||
| 4031 | " 'name': 'NC_002516.2'},\n", |
||
| 4032 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900538085.1_D23580_liv_genomic.fna',\n", |
||
| 4033 | " 'description': 'NZ_LS997973.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D23580 genome assembly, chromosome: D23580_liv_o',\n", |
||
| 4034 | " 'id': 'NZ_LS997973.1',\n", |
||
| 4035 | " 'name': 'NZ_LS997973.1'},\n", |
||
| 4036 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900538085.1_D23580_liv_genomic.fna',\n", |
||
| 4037 | " 'description': 'NZ_LS997975.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D23580 genome assembly, plasmid: D23580_liv_pBT1',\n", |
||
| 4038 | " 'id': 'NZ_LS997975.1',\n", |
||
| 4039 | " 'name': 'NZ_LS997975.1'},\n", |
||
| 4040 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900538085.1_D23580_liv_genomic.fna',\n", |
||
| 4041 | " 'description': 'NZ_LS997976.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D23580 genome assembly, plasmid: D23580_liv_pBT2',\n", |
||
| 4042 | " 'id': 'NZ_LS997976.1',\n", |
||
| 4043 | " 'name': 'NZ_LS997976.1'},\n", |
||
| 4044 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900538085.1_D23580_liv_genomic.fna',\n", |
||
| 4045 | " 'description': 'NZ_LS997977.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D23580 genome assembly, plasmid: D23580_liv_pBT3',\n", |
||
| 4046 | " 'id': 'NZ_LS997977.1',\n", |
||
| 4047 | " 'name': 'NZ_LS997977.1'},\n", |
||
| 4048 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900538085.1_D23580_liv_genomic.fna',\n", |
||
| 4049 | " 'description': 'NZ_LS997974.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D23580 genome assembly, plasmid: D23580_liv_pSLT-BT',\n", |
||
| 4050 | " 'id': 'NZ_LS997974.1',\n", |
||
| 4051 | " 'name': 'NZ_LS997974.1'},\n", |
||
| 4052 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001611275.1_ASM161127v1_genomic.fna',\n", |
||
| 4053 | " 'description': 'NZ_CP015080.1 Desulfuromonas sp. DDH964, complete genome',\n", |
||
| 4054 | " 'id': 'NZ_CP015080.1',\n", |
||
| 4055 | " 'name': 'NZ_CP015080.1'},\n", |
||
| 4056 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000785535.1_ASM78553v1_genomic.fna',\n", |
||
| 4057 | " 'description': 'NZ_CP007595.1 Arthrobacter sp. PAMC25486, complete genome',\n", |
||
| 4058 | " 'id': 'NZ_CP007595.1',\n", |
||
| 4059 | " 'name': 'NZ_CP007595.1'},\n", |
||
| 4060 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900186845.1_46338_E02_genomic.fna',\n", |
||
| 4061 | " 'description': 'NZ_LT906471.1 Bordetella pertussis strain NCTC13666 genome assembly, chromosome: 1',\n", |
||
| 4062 | " 'id': 'NZ_LT906471.1',\n", |
||
| 4063 | " 'name': 'NZ_LT906471.1'},\n", |
||
| 4064 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003353065.1_ASM335306v1_genomic.fna',\n", |
||
| 4065 | " 'description': 'NZ_CP027806.1 Candidatus Cyclonatronum proteinivorum strain Omega chromosome, complete genome',\n", |
||
| 4066 | " 'id': 'NZ_CP027806.1',\n", |
||
| 4067 | " 'name': 'NZ_CP027806.1'},\n", |
||
| 4068 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002310675.1_ASM231067v1_genomic.fna',\n", |
||
| 4069 | " 'description': 'NZ_CP023377.1 Escherichia coli strain 127 chromosome, complete genome',\n", |
||
| 4070 | " 'id': 'NZ_CP023377.1',\n", |
||
| 4071 | " 'name': 'NZ_CP023377.1'},\n", |
||
| 4072 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001448665.2_ASM144866v2_genomic.fna',\n", |
||
| 4073 | " 'description': 'NZ_CP030288.1 Salmonella enterica subsp. enterica serovar Gaminara str. SA20063285 chromosome, complete genome',\n", |
||
| 4074 | " 'id': 'NZ_CP030288.1',\n", |
||
| 4075 | " 'name': 'NZ_CP030288.1'},\n", |
||
| 4076 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000183665.1_ASM18366v1_genomic.fna',\n", |
||
| 4077 | " 'description': 'NC_014774.1 Candidatus Liberibacter solanacearum CLso-ZC1, complete genome',\n", |
||
| 4078 | " 'id': 'NC_014774.1',\n", |
||
| 4079 | " 'name': 'NC_014774.1'},\n", |
||
| 4080 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001587115.1_ASM158711v1_genomic.fna',\n", |
||
| 4081 | " 'description': 'NZ_CP011828.1 Enterococcus faecium strain UW8175, complete genome',\n", |
||
| 4082 | " 'id': 'NZ_CP011828.1',\n", |
||
| 4083 | " 'name': 'NZ_CP011828.1'},\n", |
||
| 4084 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000006925.2_ASM692v2_genomic.fna',\n", |
||
| 4085 | " 'description': 'NC_004337.2 Shigella flexneri 2a str. 301 chromosome, complete genome',\n", |
||
| 4086 | " 'id': 'NC_004337.2',\n", |
||
| 4087 | " 'name': 'NC_004337.2'},\n", |
||
| 4088 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000196735.1_ASM19673v1_genomic.fna',\n", |
||
| 4089 | " 'description': 'NC_014551.1 Bacillus amyloliquefaciens DSM7 complete genome',\n", |
||
| 4090 | " 'id': 'NC_014551.1',\n", |
||
| 4091 | " 'name': 'NC_014551.1'},\n", |
||
| 4092 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001605645.1_ASM160564v1_genomic.fna',\n", |
||
| 4093 | " 'description': 'NZ_CP010264.1 Bordetella pertussis strain I656, complete genome',\n", |
||
| 4094 | " 'id': 'NZ_CP010264.1',\n", |
||
| 4095 | " 'name': 'NZ_CP010264.1'},\n", |
||
| 4096 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001932795.1_ASM193279v1_genomic.fna',\n", |
||
| 4097 | " 'description': 'NZ_CP013778.1 Piscirickettsia salmonis strain PM51819A, complete genome',\n", |
||
| 4098 | " 'id': 'NZ_CP013778.1',\n", |
||
| 4099 | " 'name': 'NZ_CP013778.1'},\n", |
||
| 4100 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000953475.1_MfumSolVChr1_genomic.fna',\n", |
||
| 4101 | " 'description': 'NZ_LM997411.1 Methylacidiphilum fumariolicum SolV genome assembly MfumSolVChr1, chromosome : Strain_SolV_genome_(final)',\n", |
||
| 4102 | " 'id': 'NZ_LM997411.1',\n", |
||
| 4103 | " 'name': 'NZ_LM997411.1'},\n", |
||
| 4104 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000019405.1_ASM1940v1_genomic.fna',\n", |
||
| 4105 | " 'description': 'NC_010519.1 Haemophilus somnus 2336, complete genome',\n", |
||
| 4106 | " 'id': 'NC_010519.1',\n", |
||
| 4107 | " 'name': 'NC_010519.1'},\n", |
||
| 4108 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002442815.1_ASM244281v1_genomic.fna',\n", |
||
| 4109 | " 'description': 'NZ_CP017168.1 Bordetella pertussis strain J310, complete genome',\n", |
||
| 4110 | " 'id': 'NZ_CP017168.1',\n", |
||
| 4111 | " 'name': 'NZ_CP017168.1'},\n", |
||
| 4112 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002222615.2_ASM222261v2_genomic.fna',\n", |
||
| 4113 | " 'description': 'NZ_CP022412.2 Bacteroides caccae strain ATCC 43185 chromosome, complete genome',\n", |
||
| 4114 | " 'id': 'NZ_CP022412.2',\n", |
||
| 4115 | " 'name': 'NZ_CP022412.2'},\n", |
||
| 4116 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900497145.1_ASM90049714v1_genomic.fna',\n", |
||
| 4117 | " 'description': 'NZ_LS999206.1 Enterobacter cloacae isolate EC-TO80 genome assembly, chromosome: 1',\n", |
||
| 4118 | " 'id': 'NZ_LS999206.1',\n", |
||
| 4119 | " 'name': 'NZ_LS999206.1'},\n", |
||
| 4120 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900497145.1_ASM90049714v1_genomic.fna',\n", |
||
| 4121 | " 'description': 'NZ_LS999207.1 Enterobacter cloacae isolate EC-TO80 genome assembly, plasmid: 2',\n", |
||
| 4122 | " 'id': 'NZ_LS999207.1',\n", |
||
| 4123 | " 'name': 'NZ_LS999207.1'},\n", |
||
| 4124 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002850535.1_ASM285053v1_genomic.fna',\n", |
||
| 4125 | " 'description': 'NZ_CP025001.1 Bacillus siamensis strain SCSIO 05746 chromosome, complete genome',\n", |
||
| 4126 | " 'id': 'NZ_CP025001.1',\n", |
||
| 4127 | " 'name': 'NZ_CP025001.1'},\n", |
||
| 4128 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001987515.1_ASM198751v1_genomic.fna',\n", |
||
| 4129 | " 'description': 'NZ_CP011743.1 Bordetella pertussis strain I754, complete genome',\n", |
||
| 4130 | " 'id': 'NZ_CP011743.1',\n", |
||
| 4131 | " 'name': 'NZ_CP011743.1'},\n", |
||
| 4132 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000504545.1_ASM50454v1_genomic.fna',\n", |
||
| 4133 | " 'description': 'NC_023032.1 Cronobacter malonaticus, complete genome',\n", |
||
| 4134 | " 'id': 'NC_023032.1',\n", |
||
| 4135 | " 'name': 'NC_023032.1'},\n", |
||
| 4136 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900475105.1_41975_C01_genomic.fna',\n", |
||
| 4137 | " 'description': 'NZ_LS483353.1 Streptococcus pyogenes strain NCTC4001 genome assembly, chromosome: 1',\n", |
||
| 4138 | " 'id': 'NZ_LS483353.1',\n", |
||
| 4139 | " 'name': 'NZ_LS483353.1'},\n", |
||
| 4140 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003994575.1_ASM399457v1_genomic.fna',\n", |
||
| 4141 | " 'description': 'NZ_CP034713.1 Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 chromosome, complete genome',\n", |
||
| 4142 | " 'id': 'NZ_CP034713.1',\n", |
||
| 4143 | " 'name': 'NZ_CP034713.1'},\n", |
||
| 4144 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003347075.1_ASM334707v1_genomic.fna',\n", |
||
| 4145 | " 'description': 'NZ_CP018219.1 Salmonella enterica subsp. enterica strain LSP 389/97, complete genome',\n", |
||
| 4146 | " 'id': 'NZ_CP018219.1',\n", |
||
| 4147 | " 'name': 'NZ_CP018219.1'},\n", |
||
| 4148 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002760935.1_ASM276093v1_genomic.fna',\n", |
||
| 4149 | " 'description': 'NZ_CP018640.1 Salmonella enterica subsp. enterica serovar Enteritidis strain 70-1605, complete sequence',\n", |
||
| 4150 | " 'id': 'NZ_CP018640.1',\n", |
||
| 4151 | " 'name': 'NZ_CP018640.1'},\n", |
||
| 4152 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001559195.1_ASM155919v2_genomic.fna',\n", |
||
| 4153 | " 'description': 'NZ_CP014028.1 Achromobacter xylosoxidans strain FDAARGOS_150, complete genome',\n", |
||
| 4154 | " 'id': 'NZ_CP014028.1',\n", |
||
| 4155 | " 'name': 'NZ_CP014028.1'},\n", |
||
| 4156 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001750405.1_ASM175040v1_genomic.fna',\n", |
||
| 4157 | " 'description': 'NZ_CP015413.1 Pseudoalteromonas luteoviolacea strain S40542 chromosome 1, complete sequence',\n", |
||
| 4158 | " 'id': 'NZ_CP015413.1',\n", |
||
| 4159 | " 'name': 'NZ_CP015413.1'},\n", |
||
| 4160 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001750405.1_ASM175040v1_genomic.fna',\n", |
||
| 4161 | " 'description': 'NZ_CP015414.1 Pseudoalteromonas luteoviolacea strain S40542 chromosome 2, complete sequence',\n", |
||
| 4162 | " 'id': 'NZ_CP015414.1',\n", |
||
| 4163 | " 'name': 'NZ_CP015414.1'},\n", |
||
| 4164 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003031995.1_ASM303199v1_genomic.fna',\n", |
||
| 4165 | " 'description': 'NZ_CP025554.1 Salmonella enterica subsp. enterica serovar Enteritidis strain ATCC BAA-708 chromosome, complete genome',\n", |
||
| 4166 | " 'id': 'NZ_CP025554.1',\n", |
||
| 4167 | " 'name': 'NZ_CP025554.1'},\n", |
||
| 4168 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002998235.1_ASM299823v1_genomic.fna',\n", |
||
| 4169 | " 'description': 'NZ_CP027214.1 Chlamydia muridarum str. Nigg isolate CM004 chromosome, complete genome',\n", |
||
| 4170 | " 'id': 'NZ_CP027214.1',\n", |
||
| 4171 | " 'name': 'NZ_CP027214.1'},\n", |
||
| 4172 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004101425.1_ASM410142v1_genomic.fna',\n", |
||
| 4173 | " 'description': 'NZ_CP035164.1 Bacillus subtilis strain SRCM104005 chromosome, complete genome',\n", |
||
| 4174 | " 'id': 'NZ_CP035164.1',\n", |
||
| 4175 | " 'name': 'NZ_CP035164.1'},\n", |
||
| 4176 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003515585.1_ASM351558v1_genomic.fna',\n", |
||
| 4177 | " 'description': 'NZ_CP022778.1 Ralstonia solanacearum strain SL3882 chromosome, complete genome',\n", |
||
| 4178 | " 'id': 'NZ_CP022778.1',\n", |
||
| 4179 | " 'name': 'NZ_CP022778.1'},\n", |
||
| 4180 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003326015.1_ASM332601v1_genomic.fna',\n", |
||
| 4181 | " 'description': 'NZ_CP023860.1 Candidatus Thioglobus singularis strain NP1 chromosome, complete genome',\n", |
||
| 4182 | " 'id': 'NZ_CP023860.1',\n", |
||
| 4183 | " 'name': 'NZ_CP023860.1'},\n", |
||
| 4184 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000016145.1_ASM1614v1_genomic.fna',\n", |
||
| 4185 | " 'description': 'NC_009525.1 Mycobacterium tuberculosis H37Ra, complete genome',\n", |
||
| 4186 | " 'id': 'NC_009525.1',\n", |
||
| 4187 | " 'name': 'NC_009525.1'},\n", |
||
| 4188 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000619905.2_ASM61990v2_genomic.fna',\n", |
||
| 4189 | " 'description': 'NZ_CP012371.1 Nitrosospira briensis C-128, complete genome',\n", |
||
| 4190 | " 'id': 'NZ_CP012371.1',\n", |
||
| 4191 | " 'name': 'NZ_CP012371.1'},\n", |
||
| 4192 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004116995.1_ASM411699v1_genomic.fna',\n", |
||
| 4193 | " 'description': 'NZ_CP026365.1 Bacillus thermocopriae strain DUT50_236 chromosome, complete genome',\n", |
||
| 4194 | " 'id': 'NZ_CP026365.1',\n", |
||
| 4195 | " 'name': 'NZ_CP026365.1'},\n", |
||
| 4196 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003515145.1_ASM351514v1_genomic.fna',\n", |
||
| 4197 | " 'description': 'NZ_CP022770.1 Ralstonia solanacearum strain T51 chromosome, complete genome',\n", |
||
| 4198 | " 'id': 'NZ_CP022770.1',\n", |
||
| 4199 | " 'name': 'NZ_CP022770.1'},\n", |
||
| 4200 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003060845.1_ASM306084v1_genomic.fna',\n", |
||
| 4201 | " 'description': 'NZ_CP028917.1 Pseudomonas aeruginosa strain JB2 chromosome, complete genome',\n", |
||
| 4202 | " 'id': 'NZ_CP028917.1',\n", |
||
| 4203 | " 'name': 'NZ_CP028917.1'},\n", |
||
| 4204 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000010085.1_ASM1008v1_genomic.fna',\n", |
||
| 4205 | " 'description': \"NC_007712.1 Sodalis glossinidius str. 'morsitans' DNA, complete genome\",\n", |
||
| 4206 | " 'id': 'NC_007712.1',\n", |
||
| 4207 | " 'name': 'NC_007712.1'},\n", |
||
| 4208 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001936295.1_ASM193629v1_genomic.fna',\n", |
||
| 4209 | " 'description': 'NZ_CP015796.1 Borrelia mayonii strain MN14-1539 chromosome, complete genome',\n", |
||
| 4210 | " 'id': 'NZ_CP015796.1',\n", |
||
| 4211 | " 'name': 'NZ_CP015796.1'},\n", |
||
| 4212 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000828835.1_ASM82883v1_genomic.fna',\n", |
||
| 4213 | " 'description': 'NZ_AP014633.1 Thioploca ingrica DNA, complete genome',\n", |
||
| 4214 | " 'id': 'NZ_AP014633.1',\n", |
||
| 4215 | " 'name': 'NZ_AP014633.1'},\n", |
||
| 4216 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001831475.1_ASM183147v1_genomic.fna',\n", |
||
| 4217 | " 'description': 'NZ_CP017688.1 Flavobacterium crassostreae strain LPB0076 chromosome, complete genome',\n", |
||
| 4218 | " 'id': 'NZ_CP017688.1',\n", |
||
| 4219 | " 'name': 'NZ_CP017688.1'},\n", |
||
| 4220 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000092505.1_ASM9250v1_genomic.fna',\n", |
||
| 4221 | " 'description': 'NC_014136.1 Leuconostoc kimchii IMSNU 11154, complete genome',\n", |
||
| 4222 | " 'id': 'NC_014136.1',\n", |
||
| 4223 | " 'name': 'NC_014136.1'},\n", |
||
| 4224 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002741415.1_ASM274141v1_genomic.fna',\n", |
||
| 4225 | " 'description': 'NZ_CP024418.1 Acinetobacter baumannii strain A388 chromosome, complete genome',\n", |
||
| 4226 | " 'id': 'NZ_CP024418.1',\n", |
||
| 4227 | " 'name': 'NZ_CP024418.1'},\n", |
||
| 4228 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000306905.1_ASM30690v1_genomic.fna',\n", |
||
| 4229 | " 'description': 'NC_018586.1 Listeria monocytogenes strain SLCC2540, serotype 3b',\n", |
||
| 4230 | " 'id': 'NC_018586.1',\n", |
||
| 4231 | " 'name': 'NC_018586.1'},\n", |
||
| 4232 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001511835.1_XM-1_genomic.fna',\n", |
||
| 4233 | " 'description': 'NZ_LN997848.1 Magnetospirillum sp. XM-1 genome assembly XM-1, chromosome : I',\n", |
||
| 4234 | " 'id': 'NZ_LN997848.1',\n", |
||
| 4235 | " 'name': 'NZ_LN997848.1'},\n", |
||
| 4236 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001509405.1_ASM150940v1_genomic.fna',\n", |
||
| 4237 | " 'description': 'NZ_CP011502.1 Aeromicrobium erythreum strain AR18, complete genome',\n", |
||
| 4238 | " 'id': 'NZ_CP011502.1',\n", |
||
| 4239 | " 'name': 'NZ_CP011502.1'},\n", |
||
| 4240 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000521525.1_ASM52152v1_genomic.fna',\n", |
||
| 4241 | " 'description': 'NZ_CP002697.1 Buchnera aphidicola str. USDA (Myzus persicae), complete genome',\n", |
||
| 4242 | " 'id': 'NZ_CP002697.1',\n", |
||
| 4243 | " 'name': 'NZ_CP002697.1'},\n", |
||
| 4244 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003971445.1_ASM397144v1_genomic.fna',\n", |
||
| 4245 | " 'description': 'NZ_CP033902.1 Trueperella pyogenes strain TP1 chromosome, complete genome',\n", |
||
| 4246 | " 'id': 'NZ_CP033902.1',\n", |
||
| 4247 | " 'name': 'NZ_CP033902.1'},\n", |
||
| 4248 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001922185.1_ASM192218v1_genomic.fna',\n", |
||
| 4249 | " 'description': 'NZ_CP013702.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961, complete genome',\n", |
||
| 4250 | " 'id': 'NZ_CP013702.1',\n", |
||
| 4251 | " 'name': 'NZ_CP013702.1'},\n", |
||
| 4252 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000014725.1_ASM1472v1_genomic.fna',\n", |
||
| 4253 | " 'description': 'NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete genome',\n", |
||
| 4254 | " 'id': 'NC_008346.1',\n", |
||
| 4255 | " 'name': 'NC_008346.1'},\n", |
||
| 4256 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000284255.1_ASM28425v1_genomic.fna',\n", |
||
| 4257 | " 'description': 'NC_017075.1 Rubrivivax gelatinosus IL144 DNA, complete genome',\n", |
||
| 4258 | " 'id': 'NC_017075.1',\n", |
||
| 4259 | " 'name': 'NC_017075.1'},\n", |
||
| 4260 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004008995.1_ASM400899v1_genomic.fna',\n", |
||
| 4261 | " 'description': 'NZ_CP025372.1 Bordetella pertussis strain I372 chromosome, complete genome',\n", |
||
| 4262 | " 'id': 'NZ_CP025372.1',\n", |
||
| 4263 | " 'name': 'NZ_CP025372.1'},\n", |
||
| 4264 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003226795.1_ASM322679v1_genomic.fna',\n", |
||
| 4265 | " 'description': 'NZ_CP029813.1 Blattabacterium punctulatus strain CPUbt chromosome, complete genome',\n", |
||
| 4266 | " 'id': 'NZ_CP029813.1',\n", |
||
| 4267 | " 'name': 'NZ_CP029813.1'},\n", |
||
| 4268 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000023885.1_ASM2388v1_genomic.fna',\n", |
||
| 4269 | " 'description': 'NC_013165.1 Slackia heliotrinireducens DSM 20476, complete genome',\n", |
||
| 4270 | " 'id': 'NC_013165.1',\n", |
||
| 4271 | " 'name': 'NC_013165.1'},\n", |
||
| 4272 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001506925.1_ASM150692v1_genomic.fna',\n", |
||
| 4273 | " 'description': 'NZ_CP010457.1 Campylobacter jejuni strain CJ677CC539, complete genome',\n", |
||
| 4274 | " 'id': 'NZ_CP010457.1',\n", |
||
| 4275 | " 'name': 'NZ_CP010457.1'},\n", |
||
| 4276 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000740295.1_ASM74029v1_genomic.fna',\n", |
||
| 4277 | " 'description': 'NZ_CP007663.1 Brucella abortus strain 63 75 chromosome 1, complete sequence',\n", |
||
| 4278 | " 'id': 'NZ_CP007663.1',\n", |
||
| 4279 | " 'name': 'NZ_CP007663.1'},\n", |
||
| 4280 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000740295.1_ASM74029v1_genomic.fna',\n", |
||
| 4281 | " 'description': 'NZ_CP007662.1 Brucella abortus strain 63 75 chromosome 2, complete sequence',\n", |
||
| 4282 | " 'id': 'NZ_CP007662.1',\n", |
||
| 4283 | " 'name': 'NZ_CP007662.1'},\n", |
||
| 4284 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001987535.1_ASM198753v1_genomic.fna',\n", |
||
| 4285 | " 'description': 'NZ_CP011744.1 Bordetella pertussis strain I755, complete genome',\n", |
||
| 4286 | " 'id': 'NZ_CP011744.1',\n", |
||
| 4287 | " 'name': 'NZ_CP011744.1'},\n", |
||
| 4288 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900638055.1_55147_A01_genomic.fna',\n", |
||
| 4289 | " 'description': 'NZ_LR134484.1 Gemella haemolysans strain NCTC10459 genome assembly, chromosome: 1',\n", |
||
| 4290 | " 'id': 'NZ_LR134484.1',\n", |
||
| 4291 | " 'name': 'NZ_LR134484.1'},\n", |
||
| 4292 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002786535.1_ASM278653v1_genomic.fna',\n", |
||
| 4293 | " 'description': 'NZ_CP022291.1 Staphylococcus aureus subsp. aureus strain EDCC5464 chromosome, complete genome',\n", |
||
| 4294 | " 'id': 'NZ_CP022291.1',\n", |
||
| 4295 | " 'name': 'NZ_CP022291.1'},\n", |
||
| 4296 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002859825.1_ASM285982v1_genomic.fna',\n", |
||
| 4297 | " 'description': 'NZ_CP018042.1 Bordetella pertussis strain J313 chromosome, complete genome',\n", |
||
| 4298 | " 'id': 'NZ_CP018042.1',\n", |
||
| 4299 | " 'name': 'NZ_CP018042.1'},\n", |
||
| 4300 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004114735.1_ASM411473v1_genomic.fna',\n", |
||
| 4301 | " 'description': 'NZ_CP035306.1 Streptococcus thermophilus strain IDCC2201 chromosome, complete genome',\n", |
||
| 4302 | " 'id': 'NZ_CP035306.1',\n", |
||
| 4303 | " 'name': 'NZ_CP035306.1'},\n", |
||
| 4304 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003324975.1_ASM332497v1_genomic.fna',\n", |
||
| 4305 | " 'description': 'NZ_CP030209.1 Salmonella enterica strain SA20044414 chromosome, complete genome',\n", |
||
| 4306 | " 'id': 'NZ_CP030209.1',\n", |
||
| 4307 | " 'name': 'NZ_CP030209.1'},\n", |
||
| 4308 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001586195.1_ASM158619v1_genomic.fna',\n", |
||
| 4309 | " 'description': 'NZ_CP014609.1 Solibacillus silvestris strain DSM 12223, complete genome',\n", |
||
| 4310 | " 'id': 'NZ_CP014609.1',\n", |
||
| 4311 | " 'name': 'NZ_CP014609.1'},\n", |
||
| 4312 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002736065.1_ASM273606v1_genomic.fna',\n", |
||
| 4313 | " 'description': 'NZ_CP024159.1 Pseudomonas mosselii strain PtA1 chromosome, complete genome',\n", |
||
| 4314 | " 'id': 'NZ_CP024159.1',\n", |
||
| 4315 | " 'name': 'NZ_CP024159.1'},\n", |
||
| 4316 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002082215.1_ASM208221v1_genomic.fna',\n", |
||
| 4317 | " 'description': 'NZ_CP017581.1 Pantoea stewartii subsp. stewartii DC283, complete genome',\n", |
||
| 4318 | " 'id': 'NZ_CP017581.1',\n", |
||
| 4319 | " 'name': 'NZ_CP017581.1'},\n", |
||
| 4320 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001988755.1_ASM198875v1_genomic.fna',\n", |
||
| 4321 | " 'description': 'NZ_CP013878.1 Bordetella pertussis strain H361, complete genome',\n", |
||
| 4322 | " 'id': 'NZ_CP013878.1',\n", |
||
| 4323 | " 'name': 'NZ_CP013878.1'},\n", |
||
| 4324 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002192515.1_ASM219251v1_genomic.fna',\n", |
||
| 4325 | " 'description': 'NZ_CP020723.1 Bacillus thuringiensis strain BM-BT15426 chromosome, complete genome',\n", |
||
| 4326 | " 'id': 'NZ_CP020723.1',\n", |
||
| 4327 | " 'name': 'NZ_CP020723.1'},\n", |
||
| 4328 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001985525.1_ASM198552v1_genomic.fna',\n", |
||
| 4329 | " 'description': 'NZ_CP011197.1 Bordetella pertussis strain H812, complete genome',\n", |
||
| 4330 | " 'id': 'NZ_CP011197.1',\n", |
||
| 4331 | " 'name': 'NZ_CP011197.1'},\n", |
||
| 4332 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003515225.1_ASM351522v1_genomic.fna',\n", |
||
| 4333 | " 'description': 'NZ_CP022794.1 Ralstonia solanacearum strain SL2330 chromosome, complete genome',\n", |
||
| 4334 | " 'id': 'NZ_CP022794.1',\n", |
||
| 4335 | " 'name': 'NZ_CP022794.1'},\n", |
||
| 4336 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001683315.1_ASM168331v1_genomic.fna',\n", |
||
| 4337 | " 'description': 'NZ_CP013980.1 Staphylococcus equorum strain KM1031, complete genome',\n", |
||
| 4338 | " 'id': 'NZ_CP013980.1',\n", |
||
| 4339 | " 'name': 'NZ_CP013980.1'},\n", |
||
| 4340 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002091395.1_ASM209139v1_genomic.fna',\n", |
||
| 4341 | " 'description': 'NZ_AP017913.1 Candidatus Azobacteroides pseudotrichonymphae DNA, chromosome: I, complete genome, phylotype ProJPt-1',\n", |
||
| 4342 | " 'id': 'NZ_AP017913.1',\n", |
||
| 4343 | " 'name': 'NZ_AP017913.1'},\n", |
||
| 4344 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002091395.1_ASM209139v1_genomic.fna',\n", |
||
| 4345 | " 'description': 'NZ_AP017914.1 Candidatus Azobacteroides pseudotrichonymphae DNA, chromosome: II, complete genome, phylotype ProJPt-1',\n", |
||
| 4346 | " 'id': 'NZ_AP017914.1',\n", |
||
| 4347 | " 'name': 'NZ_AP017914.1'},\n", |
||
| 4348 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004328765.1_ASM432876v1_genomic.fna',\n", |
||
| 4349 | " 'description': 'NZ_CP025280.1 Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60983 chromosome, complete genome',\n", |
||
| 4350 | " 'id': 'NZ_CP025280.1',\n", |
||
| 4351 | " 'name': 'NZ_CP025280.1'},\n", |
||
| 4352 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003994655.1_ASM399465v1_genomic.fna',\n", |
||
| 4353 | " 'description': 'NZ_CP034719.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RSE04 chromosome, complete genome',\n", |
||
| 4354 | " 'id': 'NZ_CP034719.1',\n", |
||
| 4355 | " 'name': 'NZ_CP034719.1'},\n", |
||
| 4356 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003628675.1_ASM362867v1_genomic.fna',\n", |
||
| 4357 | " 'description': 'NZ_CP026982.1 Pectobacterium parmentieri strain IFB5486 chromosome, complete genome',\n", |
||
| 4358 | " 'id': 'NZ_CP026982.1',\n", |
||
| 4359 | " 'name': 'NZ_CP026982.1'},\n", |
||
| 4360 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001596055.1_ASM159605v1_genomic.fna',\n", |
||
| 4361 | " 'description': 'NZ_CP014781.1 Bacillus licheniformis strain HRBL-15TDI7 chromosome, complete genome',\n", |
||
| 4362 | " 'id': 'NZ_CP014781.1',\n", |
||
| 4363 | " 'name': 'NZ_CP014781.1'},\n", |
||
| 4364 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001267435.1_ASM126743v1_genomic.fna',\n", |
||
| 4365 | " 'description': 'NZ_CP012370.1 Moorella thermoacetica strain DSM 2955, complete genome',\n", |
||
| 4366 | " 'id': 'NZ_CP012370.1',\n", |
||
| 4367 | " 'name': 'NZ_CP012370.1'},\n", |
||
| 4368 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000265465.1_ASM26546v1_genomic.fna',\n", |
||
| 4369 | " 'description': 'NC_018016.1 Ornithobacterium rhinotracheale DSM 15997, complete genome',\n", |
||
| 4370 | " 'id': 'NC_018016.1',\n", |
||
| 4371 | " 'name': 'NC_018016.1'},\n", |
||
| 4372 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000525675.1_ASM52567v1_genomic.fna',\n", |
||
| 4373 | " 'description': 'NZ_CP002190.1 Bdellovibrio bacteriovorus W, complete genome',\n", |
||
| 4374 | " 'id': 'NZ_CP002190.1',\n", |
||
| 4375 | " 'name': 'NZ_CP002190.1'},\n", |
||
| 4376 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000007025.1_ASM702v1_genomic.fna',\n", |
||
| 4377 | " 'description': 'NC_003103.1 Rickettsia conorii str. Malish 7, complete genome',\n", |
||
| 4378 | " 'id': 'NC_003103.1',\n", |
||
| 4379 | " 'name': 'NC_003103.1'},\n", |
||
| 4380 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000012825.1_ASM1282v1_genomic.fna',\n", |
||
| 4381 | " 'description': 'NC_009614.1 Bacteroides vulgatus ATCC 8482, complete genome',\n", |
||
| 4382 | " 'id': 'NC_009614.1',\n", |
||
| 4383 | " 'name': 'NC_009614.1'},\n", |
||
| 4384 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002088355.1_ASM208835v1_genomic.fna',\n", |
||
| 4385 | " 'description': 'NZ_CP020537.1 Chlamydia trachomatis strain chxRP1H1, complete genome',\n", |
||
| 4386 | " 'id': 'NZ_CP020537.1',\n", |
||
| 4387 | " 'name': 'NZ_CP020537.1'},\n", |
||
| 4388 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002741035.1_ASM274103v1_genomic.fna',\n", |
||
| 4389 | " 'description': 'NZ_CP016808.1 Paenibacillus sp. BIHB4019, complete genome',\n", |
||
| 4390 | " 'id': 'NZ_CP016808.1',\n", |
||
| 4391 | " 'name': 'NZ_CP016808.1'},\n", |
||
| 4392 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002949695.1_ASM294969v1_genomic.fna',\n", |
||
| 4393 | " 'description': 'NZ_CP026776.1 Shigella flexneri strain 98-3193 chromosome, complete genome',\n", |
||
| 4394 | " 'id': 'NZ_CP026776.1',\n", |
||
| 4395 | " 'name': 'NZ_CP026776.1'},\n", |
||
| 4396 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900478325.1_33962_G01_genomic.fna',\n", |
||
| 4397 | " 'description': 'NZ_LS483486.1 Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1',\n", |
||
| 4398 | " 'id': 'NZ_LS483486.1',\n", |
||
| 4399 | " 'name': 'NZ_LS483486.1'},\n", |
||
| 4400 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001766315.1_ASM176631v1_genomic.fna',\n", |
||
| 4401 | " 'description': 'NZ_CP016872.1 Legionella pneumophila subsp. pneumophila strain FFI104 chromosome, complete genome',\n", |
||
| 4402 | " 'id': 'NZ_CP016872.1',\n", |
||
| 4403 | " 'name': 'NZ_CP016872.1'},\n", |
||
| 4404 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000941055.1_ASM94105v1_genomic.fna',\n", |
||
| 4405 | " 'description': 'NZ_CP007202.1 Siansivirga zeaxanthinifaciens CC-SAMT-1, complete genome',\n", |
||
| 4406 | " 'id': 'NZ_CP007202.1',\n", |
||
| 4407 | " 'name': 'NZ_CP007202.1'},\n", |
||
| 4408 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002072655.1_ASM207265v1_genomic.fna',\n", |
||
| 4409 | " 'description': 'NZ_CP020358.1 Klebsiella oxytoca strain AR_0147, complete genome',\n", |
||
| 4410 | " 'id': 'NZ_CP020358.1',\n", |
||
| 4411 | " 'name': 'NZ_CP020358.1'},\n", |
||
| 4412 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637945.1_53421_E01_genomic.fna',\n", |
||
| 4413 | " 'description': 'NZ_LR134475.1 Klebsiella aerogenes strain NCTC9735 genome assembly, chromosome: 1',\n", |
||
| 4414 | " 'id': 'NZ_LR134475.1',\n", |
||
| 4415 | " 'name': 'NZ_LR134475.1'},\n", |
||
| 4416 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002796585.1_ASM279658v1_genomic.fna',\n", |
||
| 4417 | " 'description': 'NZ_CP024886.1 Escherichia coli strain AR_0017 chromosome, complete genome',\n", |
||
| 4418 | " 'id': 'NZ_CP024886.1',\n", |
||
| 4419 | " 'name': 'NZ_CP024886.1'},\n", |
||
| 4420 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000023585.1_ASM2358v1_genomic.fna',\n", |
||
| 4421 | " 'description': 'NC_012914.1 Paenibacillus sp. JDR-2, complete genome',\n", |
||
| 4422 | " 'id': 'NC_012914.1',\n", |
||
| 4423 | " 'name': 'NC_012914.1'},\n", |
||
| 4424 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000934325.3_ASM93432v3_genomic.fna',\n", |
||
| 4425 | " 'description': 'NZ_CP015773.2 Mycobacterium bovis strain SP38, complete genome',\n", |
||
| 4426 | " 'id': 'NZ_CP015773.2',\n", |
||
| 4427 | " 'name': 'NZ_CP015773.2'},\n", |
||
| 4428 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002859985.1_ASM285998v1_genomic.fna',\n", |
||
| 4429 | " 'description': 'NZ_CP018899.1 Bordetella holmesii isolate F615 chromosome, complete genome',\n", |
||
| 4430 | " 'id': 'NZ_CP018899.1',\n", |
||
| 4431 | " 'name': 'NZ_CP018899.1'},\n", |
||
| 4432 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002213785.1_ASM221378v1_genomic.fna',\n", |
||
| 4433 | " 'description': 'NZ_CP007196.1 Listeria monocytogenes serotype 3c str. 10-5027, complete genome',\n", |
||
| 4434 | " 'id': 'NZ_CP007196.1',\n", |
||
| 4435 | " 'name': 'NZ_CP007196.1'},\n", |
||
| 4436 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002950235.1_ASM295023v1_genomic.fna',\n", |
||
| 4437 | " 'description': 'NZ_CP026792.1 Shigella flexneri strain 61-4982 chromosome, complete genome',\n", |
||
| 4438 | " 'id': 'NZ_CP026792.1',\n", |
||
| 4439 | " 'name': 'NZ_CP026792.1'},\n", |
||
| 4440 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001558875.2_ASM155887v2_genomic.fna',\n", |
||
| 4441 | " 'description': 'NZ_CP014067.2 Enterococcus gallinarum strain FDAARGOS_163 chromosome, complete genome',\n", |
||
| 4442 | " 'id': 'NZ_CP014067.2',\n", |
||
| 4443 | " 'name': 'NZ_CP014067.2'},\n", |
||
| 4444 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001932635.1_ASM193263v1_genomic.fna',\n", |
||
| 4445 | " 'description': 'NZ_CP009769.1 Pectobacterium carotovorum subsp. brasiliense strain BC1, complete genome',\n", |
||
| 4446 | " 'id': 'NZ_CP009769.1',\n", |
||
| 4447 | " 'name': 'NZ_CP009769.1'},\n", |
||
| 4448 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000988655.1_ASM98865v1_genomic.fna',\n", |
||
| 4449 | " 'description': 'NZ_CP011377.1 Moraxella bovoculi strain 23343, complete genome',\n", |
||
| 4450 | " 'id': 'NZ_CP011377.1',\n", |
||
| 4451 | " 'name': 'NZ_CP011377.1'},\n", |
||
| 4452 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000815105.2_ASM81510v2_genomic.fna',\n", |
||
| 4453 | " 'description': 'NZ_CP010310.2 Pandoraea pulmonicola strain DSM 16583, complete genome',\n", |
||
| 4454 | " 'id': 'NZ_CP010310.2',\n", |
||
| 4455 | " 'name': 'NZ_CP010310.2'},\n", |
||
| 4456 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001183845.1_ASM118384v1_genomic.fna',\n", |
||
| 4457 | " 'description': 'NZ_CP010571.1 Chlamydia trachomatis strain Ia/CS190/96, complete genome',\n", |
||
| 4458 | " 'id': 'NZ_CP010571.1',\n", |
||
| 4459 | " 'name': 'NZ_CP010571.1'},\n", |
||
| 4460 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001183845.1_ASM118384v1_genomic.fna',\n", |
||
| 4461 | " 'description': 'NZ_CP010572.1 Chlamydia trachomatis strain Ia/CS190/96 plasmid, complete sequence',\n", |
||
| 4462 | " 'id': 'NZ_CP010572.1',\n", |
||
| 4463 | " 'name': 'NZ_CP010572.1'},\n", |
||
| 4464 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004119755.1_ASM411975v1_genomic.fna',\n", |
||
| 4465 | " 'description': 'NZ_CP035404.1 Bacillus licheniformis strain SRCM103583 chromosome, complete genome',\n", |
||
| 4466 | " 'id': 'NZ_CP035404.1',\n", |
||
| 4467 | " 'name': 'NZ_CP035404.1'},\n", |
||
| 4468 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003522845.1_ASM352284v1_genomic.fna',\n", |
||
| 4469 | " 'description': 'NZ_CP023029.1 Acinetobacter baumannii strain 9102 chromosome, complete genome',\n", |
||
| 4470 | " 'id': 'NZ_CP023029.1',\n", |
||
| 4471 | " 'name': 'NZ_CP023029.1'},\n", |
||
| 4472 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002000845.1_ASM200084v1_genomic.fna',\n", |
||
| 4473 | " 'description': 'NZ_CP014441.1 Staphylococcus aureus strain USA300-SUR23, complete genome',\n", |
||
| 4474 | " 'id': 'NZ_CP014441.1',\n", |
||
| 4475 | " 'name': 'NZ_CP014441.1'},\n", |
||
| 4476 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003312545.2_ASM331254v2_genomic.fna',\n", |
||
| 4477 | " 'description': 'NZ_CP030787.2 Escherichia albertii strain 2013C-4143 chromosome, complete genome',\n", |
||
| 4478 | " 'id': 'NZ_CP030787.2',\n", |
||
| 4479 | " 'name': 'NZ_CP030787.2'},\n", |
||
| 4480 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003347095.1_ASM334709v1_genomic.fna',\n", |
||
| 4481 | " 'description': 'NZ_CP022375.1 Francisella sp. 14-2155 chromosome, complete genome',\n", |
||
| 4482 | " 'id': 'NZ_CP022375.1',\n", |
||
| 4483 | " 'name': 'NZ_CP022375.1'},\n", |
||
| 4484 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001558775.1_ASM155877v1_genomic.fna',\n", |
||
| 4485 | " 'description': 'NZ_CP014022.1 Staphylococcus lugdunensis strain FDAARGOS_141, complete genome',\n", |
||
| 4486 | " 'id': 'NZ_CP014022.1',\n", |
||
| 4487 | " 'name': 'NZ_CP014022.1'},\n", |
||
| 4488 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003491425.1_ASM349142v1_genomic.fna',\n", |
||
| 4489 | " 'description': 'NZ_CP030364.1 Salinibacter ruber strain M1 chromosome, complete genome',\n", |
||
| 4490 | " 'id': 'NZ_CP030364.1',\n", |
||
| 4491 | " 'name': 'NZ_CP030364.1'},\n", |
||
| 4492 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000347635.1_ASM34763v1_genomic.fna',\n", |
||
| 4493 | " 'description': 'NC_020514.1 Paraglaciecola psychrophila 170, complete genome',\n", |
||
| 4494 | " 'id': 'NC_020514.1',\n", |
||
| 4495 | " 'name': 'NC_020514.1'},\n", |
||
| 4496 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000300295.4_ASM30029v4_genomic.fna',\n", |
||
| 4497 | " 'description': 'NZ_CP011849.2 Piscirickettsia salmonis strain LF-89, complete genome',\n", |
||
| 4498 | " 'id': 'NZ_CP011849.2',\n", |
||
| 4499 | " 'name': 'NZ_CP011849.2'},\n", |
||
| 4500 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001509915.1_ASM150991v1_genomic.fna',\n", |
||
| 4501 | " 'description': 'NZ_CP010966.1 Bordetella pertussis strain I979, complete genome',\n", |
||
| 4502 | " 'id': 'NZ_CP010966.1',\n", |
||
| 4503 | " 'name': 'NZ_CP010966.1'},\n", |
||
| 4504 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001931595.1_ASM193159v1_genomic.fna',\n", |
||
| 4505 | " 'description': 'NZ_CP016410.1 Salmonella enterica subsp. enterica serovar Infantis strain N55391, complete genome',\n", |
||
| 4506 | " 'id': 'NZ_CP016410.1',\n", |
||
| 4507 | " 'name': 'NZ_CP016410.1'},\n", |
||
| 4508 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900636785.1_44257_F01_genomic.fna',\n", |
||
| 4509 | " 'description': 'NZ_LR134311.1 Escherichia coli strain NCTC9113 genome assembly, chromosome: 1',\n", |
||
| 4510 | " 'id': 'NZ_LR134311.1',\n", |
||
| 4511 | " 'name': 'NZ_LR134311.1'},\n", |
||
| 4512 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000015185.1_ASM1518v1_genomic.fna',\n", |
||
| 4513 | " 'description': 'NC_008750.1 Shewanella sp. W3-18-1, complete genome',\n", |
||
| 4514 | " 'id': 'NC_008750.1',\n", |
||
| 4515 | " 'name': 'NC_008750.1'},\n", |
||
| 4516 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001652505.2_ASM165250v2_genomic.fna',\n", |
||
| 4517 | " 'description': 'NZ_CP015774.2 Lelliottia amnigena strain ZB04, complete genome',\n", |
||
| 4518 | " 'id': 'NZ_CP015774.2',\n", |
||
| 4519 | " 'name': 'NZ_CP015774.2'},\n", |
||
| 4520 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004009775.1_ASM400977v1_genomic.fna',\n", |
||
| 4521 | " 'description': 'NZ_CP025525.1 Bordetella pertussis strain I420 chromosome, complete genome',\n", |
||
| 4522 | " 'id': 'NZ_CP025525.1',\n", |
||
| 4523 | " 'name': 'NZ_CP025525.1'},\n", |
||
| 4524 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003589945.1_ASM358994v1_genomic.fna',\n", |
||
| 4525 | " 'description': 'NZ_CP032400.1 Streptococcus iniae strain YM011 chromosome, complete genome',\n", |
||
| 4526 | " 'id': 'NZ_CP032400.1',\n", |
||
| 4527 | " 'name': 'NZ_CP032400.1'},\n", |
||
| 4528 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000204135.1_ASM20413v1_genomic.fna',\n", |
||
| 4529 | " 'description': 'NC_015408.1 Chlamydophila pecorum E58, complete genome',\n", |
||
| 4530 | " 'id': 'NC_015408.1',\n", |
||
| 4531 | " 'name': 'NC_015408.1'},\n", |
||
| 4532 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000441755.1_ASM44175v1_genomic.fna',\n", |
||
| 4533 | " 'description': 'NC_021898.1 Chlamydia trachomatis RC-J/966, complete genome',\n", |
||
| 4534 | " 'id': 'NC_021898.1',\n", |
||
| 4535 | " 'name': 'NC_021898.1'},\n", |
||
| 4536 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002327185.1_ASM232718v1_genomic.fna',\n", |
||
| 4537 | " 'description': 'NZ_CP018624.1 Clostridium chauvoei strain DSM 7528 chromosome, complete genome',\n", |
||
| 4538 | " 'id': 'NZ_CP018624.1',\n", |
||
| 4539 | " 'name': 'NZ_CP018624.1'},\n", |
||
| 4540 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001506825.1_ASM150682v1_genomic.fna',\n", |
||
| 4541 | " 'description': 'NZ_CP010507.1 Campylobacter jejuni strain CJ677CC078, complete genome',\n", |
||
| 4542 | " 'id': 'NZ_CP010507.1',\n", |
||
| 4543 | " 'name': 'NZ_CP010507.1'},\n", |
||
| 4544 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001901025.1_ASM190102v1_genomic.fna',\n", |
||
| 4545 | " 'description': 'NZ_CP010180.1 Escherichia coli strain M1, complete genome',\n", |
||
| 4546 | " 'id': 'NZ_CP010180.1',\n", |
||
| 4547 | " 'name': 'NZ_CP010180.1'},\n", |
||
| 4548 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002224585.2_ASM222458v2_genomic.fna',\n", |
||
| 4549 | " 'description': 'NZ_CP022427.1 Pantoea ananatis strain YJ76 chromosome, complete genome',\n", |
||
| 4550 | " 'id': 'NZ_CP022427.1',\n", |
||
| 4551 | " 'name': 'NZ_CP022427.1'},\n", |
||
| 4552 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001506465.1_ASM150646v1_genomic.fna',\n", |
||
| 4553 | " 'description': 'NZ_CP010489.1 Campylobacter jejuni strain CJ677CC530, complete genome',\n", |
||
| 4554 | " 'id': 'NZ_CP010489.1',\n", |
||
| 4555 | " 'name': 'NZ_CP010489.1'},\n", |
||
| 4556 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000147055.1_ASM14705v1_genomic.fna',\n", |
||
| 4557 | " 'description': 'NC_014500.1 Dickeya dadantii 3937, complete genome',\n", |
||
| 4558 | " 'id': 'NC_014500.1',\n", |
||
| 4559 | " 'name': 'NC_014500.1'},\n", |
||
| 4560 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002077195.1_ASM207719v1_genomic.fna',\n", |
||
| 4561 | " 'description': 'NZ_CP017220.1 Escherichia coli strain FAM21845 chromosome, complete genome',\n", |
||
| 4562 | " 'id': 'NZ_CP017220.1',\n", |
||
| 4563 | " 'name': 'NZ_CP017220.1'},\n", |
||
| 4564 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004007475.1_ASM400747v1_genomic.fna',\n", |
||
| 4565 | " 'description': 'NZ_CP025342.1 Bordetella pertussis strain F580 chromosome, complete genome',\n", |
||
| 4566 | " 'id': 'NZ_CP025342.1',\n", |
||
| 4567 | " 'name': 'NZ_CP025342.1'},\n", |
||
| 4568 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000024385.1_ASM2438v1_genomic.fna',\n", |
||
| 4569 | " 'description': 'NC_013510.1 Thermomonospora curvata DSM 43183, complete genome',\n", |
||
| 4570 | " 'id': 'NC_013510.1',\n", |
||
| 4571 | " 'name': 'NC_013510.1'},\n", |
||
| 4572 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002080415.1_ASM208041v1_genomic.fna',\n", |
||
| 4573 | " 'description': 'NZ_CP020474.1 Roseovarius mucosus strain SMR3 chromosome, complete genome',\n", |
||
| 4574 | " 'id': 'NZ_CP020474.1',\n", |
||
| 4575 | " 'name': 'NZ_CP020474.1'},\n", |
||
| 4576 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003609975.1_ASM360997v1_genomic.fna',\n", |
||
| 4577 | " 'description': 'NZ_AP018400.1 Streptococcus ruminantium GUT187T DNA, complete genome',\n", |
||
| 4578 | " 'id': 'NZ_AP018400.1',\n", |
||
| 4579 | " 'name': 'NZ_AP018400.1'},\n", |
||
| 4580 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900636875.1_44927_D01_genomic.fna',\n", |
||
| 4581 | " 'description': 'NZ_LR134322.1 Lactobacillus rhamnosus strain NCTC13710 genome assembly, chromosome: 1',\n", |
||
| 4582 | " 'id': 'NZ_LR134322.1',\n", |
||
| 4583 | " 'name': 'NZ_LR134322.1'},\n", |
||
| 4584 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635815.1_34347_B01_genomic.fna',\n", |
||
| 4585 | " 'description': 'NZ_LR134173.1 Legionella cherrii strain NCTC11976 genome assembly, chromosome: 1',\n", |
||
| 4586 | " 'id': 'NZ_LR134173.1',\n", |
||
| 4587 | " 'name': 'NZ_LR134173.1'},\n", |
||
| 4588 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002158885.1_ASM215888v1_genomic.fna',\n", |
||
| 4589 | " 'description': 'NZ_CP021427.1 Lactobacillus gasseri strain 4M13, complete genome',\n", |
||
| 4590 | " 'id': 'NZ_CP021427.1',\n", |
||
| 4591 | " 'name': 'NZ_CP021427.1'},\n", |
||
| 4592 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001558795.2_ASM155879v2_genomic.fna',\n", |
||
| 4593 | " 'description': 'NZ_CP014064.2 Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome',\n", |
||
| 4594 | " 'id': 'NZ_CP014064.2',\n", |
||
| 4595 | " 'name': 'NZ_CP014064.2'},\n", |
||
| 4596 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000009885.1_ASM988v1_genomic.fna',\n", |
||
| 4597 | " 'description': 'NC_012731.1 Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 DNA, complete genome',\n", |
||
| 4598 | " 'id': 'NC_012731.1',\n", |
||
| 4599 | " 'name': 'NC_012731.1'},\n", |
||
| 4600 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900474975.1_41906_B02_genomic.fna',\n", |
||
| 4601 | " 'description': 'NZ_LS483352.1 Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1',\n", |
||
| 4602 | " 'id': 'NZ_LS483352.1',\n", |
||
| 4603 | " 'name': 'NZ_LS483352.1'},\n", |
||
| 4604 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002208665.2_ASM220866v2_genomic.fna',\n", |
||
| 4605 | " 'description': 'NZ_CP022037.2 [Haemophilus] ducreyi strain FDAARGOS_297 chromosome, complete genome',\n", |
||
| 4606 | " 'id': 'NZ_CP022037.2',\n", |
||
| 4607 | " 'name': 'NZ_CP022037.2'},\n", |
||
| 4608 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637195.1_50279_F01_genomic.fna',\n", |
||
| 4609 | " 'description': 'NZ_LR134356.1 Mycolicibacterium aurum strain NCTC10437 genome assembly, chromosome: 1',\n", |
||
| 4610 | " 'id': 'NZ_LR134356.1',\n", |
||
| 4611 | " 'name': 'NZ_LR134356.1'},\n", |
||
| 4612 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003254805.1_ASM325480v1_genomic.fna',\n", |
||
| 4613 | " 'description': 'NZ_CP030007.1 Enterobacter hormaechei subsp. xiangfangensis strain Pb204 chromosome, complete genome',\n", |
||
| 4614 | " 'id': 'NZ_CP030007.1',\n", |
||
| 4615 | " 'name': 'NZ_CP030007.1'},\n", |
||
| 4616 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000016705.1_ASM1670v1_genomic.fna',\n", |
||
| 4617 | " 'description': 'NC_009455.1 Dehalococcoides mccartyi BAV1, complete genome',\n", |
||
| 4618 | " 'id': 'NC_009455.1',\n", |
||
| 4619 | " 'name': 'NC_009455.1'},\n", |
||
| 4620 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000196335.1_ASM19633v1_genomic.fna',\n", |
||
| 4621 | " 'description': 'NC_006958.1 Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome',\n", |
||
| 4622 | " 'id': 'NC_006958.1',\n", |
||
| 4623 | " 'name': 'NC_006958.1'},\n", |
||
| 4624 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003945305.1_ASM394530v1_genomic.fna',\n", |
||
| 4625 | " 'description': 'NZ_AP019314.1 Microcystis viridis NIES-102 DNA, complete genome',\n", |
||
| 4626 | " 'id': 'NZ_AP019314.1',\n", |
||
| 4627 | " 'name': 'NZ_AP019314.1'},\n", |
||
| 4628 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003048375.1_ASM304837v1_genomic.fna',\n", |
||
| 4629 | " 'description': 'NZ_CP021642.1 Campylobacter concisus strain P2CDO4 chromosome, complete genome',\n", |
||
| 4630 | " 'id': 'NZ_CP021642.1',\n", |
||
| 4631 | " 'name': 'NZ_CP021642.1'},\n", |
||
| 4632 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002355995.1_ASM235599v1_genomic.fna',\n", |
||
| 4633 | " 'description': 'NZ_AP017920.1 Thermus thermophilus DNA, complete genome, strain: TMY',\n", |
||
| 4634 | " 'id': 'NZ_AP017920.1',\n", |
||
| 4635 | " 'name': 'NZ_AP017920.1'},\n", |
||
| 4636 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001891125.1_ASM189112v1_genomic.fna',\n", |
||
| 4637 | " 'description': 'NZ_CP015247.1 Leuconostoc mesenteroides subsp. suionicum strain DSM 20241, complete genome',\n", |
||
| 4638 | " 'id': 'NZ_CP015247.1',\n", |
||
| 4639 | " 'name': 'NZ_CP015247.1'},\n", |
||
| 4640 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001891125.1_ASM189112v1_genomic.fna',\n", |
||
| 4641 | " 'description': 'NZ_CP015248.1 Leuconostoc mesenteroides subsp. suionicum strain DSM 20241 plasmid, complete sequence',\n", |
||
| 4642 | " 'id': 'NZ_CP015248.1',\n", |
||
| 4643 | " 'name': 'NZ_CP015248.1'},\n", |
||
| 4644 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002447055.1_ASM244705v1_genomic.fna',\n", |
||
| 4645 | " 'description': 'NZ_CP023582.1 Mycobacterium tuberculosis strain LN3756 chromosome, complete genome',\n", |
||
| 4646 | " 'id': 'NZ_CP023582.1',\n", |
||
| 4647 | " 'name': 'NZ_CP023582.1'},\n", |
||
| 4648 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000016765.1_ASM1676v1_genomic.fna',\n", |
||
| 4649 | " 'description': 'NC_009511.1 Sphingomonas wittichii RW1, complete genome',\n", |
||
| 4650 | " 'id': 'NC_009511.1',\n", |
||
| 4651 | " 'name': 'NC_009511.1'},\n", |
||
| 4652 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002080475.1_ASM208047v1_genomic.fna',\n", |
||
| 4653 | " 'description': 'NZ_CP020559.1 Clostridium formicaceticum strain DSM 92 chromosome, complete genome',\n", |
||
| 4654 | " 'id': 'NZ_CP020559.1',\n", |
||
| 4655 | " 'name': 'NZ_CP020559.1'},\n", |
||
| 4656 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001007025.1_Wien1_genomic.fna',\n", |
||
| 4657 | " 'description': 'NZ_LN846980.1 Chlamydia pneumoniae genome assembly Wien1, chromosome : 1',\n", |
||
| 4658 | " 'id': 'NZ_LN846980.1',\n", |
||
| 4659 | " 'name': 'NZ_LN846980.1'},\n", |
||
| 4660 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000681515.1_ASM68151v1_genomic.fna',\n", |
||
| 4661 | " 'description': 'NZ_CP007600.1 Listeria monocytogenes strain CFSAN006122, complete genome',\n", |
||
| 4662 | " 'id': 'NZ_CP007600.1',\n", |
||
| 4663 | " 'name': 'NZ_CP007600.1'},\n", |
||
| 4664 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004193675.1_ASM419367v1_genomic.fna',\n", |
||
| 4665 | " 'description': 'NZ_CP035717.1 Corynebacterium pseudotuberculosis strain CAPMI03 chromosome, complete genome',\n", |
||
| 4666 | " 'id': 'NZ_CP035717.1',\n", |
||
| 4667 | " 'name': 'NZ_CP035717.1'},\n", |
||
| 4668 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000755725.1_ASM75572v1_genomic.fna',\n", |
||
| 4669 | " 'description': 'NZ_CP007783.1 Burkholderia cenocepacia strain DDS 22E-1 chromosome 1, complete sequence',\n", |
||
| 4670 | " 'id': 'NZ_CP007783.1',\n", |
||
| 4671 | " 'name': 'NZ_CP007783.1'},\n", |
||
| 4672 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000755725.1_ASM75572v1_genomic.fna',\n", |
||
| 4673 | " 'description': 'NZ_CP007784.1 Burkholderia cenocepacia strain DDS 22E-1 chromosome 2, complete sequence',\n", |
||
| 4674 | " 'id': 'NZ_CP007784.1',\n", |
||
| 4675 | " 'name': 'NZ_CP007784.1'},\n", |
||
| 4676 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000755725.1_ASM75572v1_genomic.fna',\n", |
||
| 4677 | " 'description': 'NZ_CP007782.1 Burkholderia cenocepacia strain DDS 22E-1 chromosome 3, complete sequence',\n", |
||
| 4678 | " 'id': 'NZ_CP007782.1',\n", |
||
| 4679 | " 'name': 'NZ_CP007782.1'},\n", |
||
| 4680 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900092615.1_PRJEB14041_genomic.fna',\n", |
||
| 4681 | " 'description': 'NZ_LT601384.1 Escherichia coli isolate NCTC86EC genome assembly, chromosome: I',\n", |
||
| 4682 | " 'id': 'NZ_LT601384.1',\n", |
||
| 4683 | " 'name': 'NZ_LT601384.1'},\n", |
||
| 4684 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900564155.1_PRJEB26455_genomic.fna',\n", |
||
| 4685 | " 'description': 'NZ_LS999839.1 Pedobacter sp. eg genome assembly, chromosome: contig00001',\n", |
||
| 4686 | " 'id': 'NZ_LS999839.1',\n", |
||
| 4687 | " 'name': 'NZ_LS999839.1'},\n", |
||
| 4688 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000014065.1_ASM1406v1_genomic.fna',\n", |
||
| 4689 | " 'description': 'NC_008044.1 Ruegeria sp. TM1040, complete genome',\n", |
||
| 4690 | " 'id': 'NC_008044.1',\n", |
||
| 4691 | " 'name': 'NC_008044.1'},\n", |
||
| 4692 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000014065.1_ASM1406v1_genomic.fna',\n", |
||
| 4693 | " 'description': 'NC_008043.1 Ruegeria sp. TM1040 mega plasmid, complete sequence',\n", |
||
| 4694 | " 'id': 'NC_008043.1',\n", |
||
| 4695 | " 'name': 'NC_008043.1'},\n", |
||
| 4696 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000767055.1_ASM76705v1_genomic.fna',\n", |
||
| 4697 | " 'description': 'NZ_CP006764.1 Corynebacterium doosanense CAU 212 = DSM 45436, complete genome',\n", |
||
| 4698 | " 'id': 'NZ_CP006764.1',\n", |
||
| 4699 | " 'name': 'NZ_CP006764.1'},\n", |
||
| 4700 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001266635.1_ASM126663v1_genomic.fna',\n", |
||
| 4701 | " 'description': 'NZ_CP010319.1 Streptococcus agalactiae strain GBS85147, complete genome',\n", |
||
| 4702 | " 'id': 'NZ_CP010319.1',\n", |
||
| 4703 | " 'name': 'NZ_CP010319.1'},\n", |
||
| 4704 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003018855.1_ASM301885v1_genomic.fna',\n", |
||
| 4705 | " 'description': 'NZ_CP027373.1 Escherichia coli strain 05-3629 chromosome, complete genome',\n", |
||
| 4706 | " 'id': 'NZ_CP027373.1',\n", |
||
| 4707 | " 'name': 'NZ_CP027373.1'},\n", |
||
| 4708 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900607245.1_JKD6009_genomic.fna',\n", |
||
| 4709 | " 'description': 'NZ_LR027876.1 Staphylococcus aureus strain JKD6009 genome assembly, chromosome: 1',\n", |
||
| 4710 | " 'id': 'NZ_LR027876.1',\n", |
||
| 4711 | " 'name': 'NZ_LR027876.1'},\n", |
||
| 4712 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001887535.1_ASM188753v1_genomic.fna',\n", |
||
| 4713 | " 'description': 'NZ_CP016554.1 Ralstonia solanacearum FJAT-1458 chromosome, complete genome',\n", |
||
| 4714 | " 'id': 'NZ_CP016554.1',\n", |
||
| 4715 | " 'name': 'NZ_CP016554.1'},\n", |
||
| 4716 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000258405.1_ASM25840v1_genomic.fna',\n", |
||
| 4717 | " 'description': 'NC_017464.1 Ignavibacterium album JCM 16511, complete genome',\n", |
||
| 4718 | " 'id': 'NC_017464.1',\n", |
||
| 4719 | " 'name': 'NC_017464.1'},\n", |
||
| 4720 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003073275.1_ASM307327v1_genomic.fna',\n", |
||
| 4721 | " 'description': 'NZ_CP027225.1 Phytobacter sp. SCO41 chromosome, complete genome',\n", |
||
| 4722 | " 'id': 'NZ_CP027225.1',\n", |
||
| 4723 | " 'name': 'NZ_CP027225.1'},\n", |
||
| 4724 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000039765.1_ASM3976v1_genomic.fna',\n", |
||
| 4725 | " 'description': 'NC_004459.3 Vibrio vulnificus CMCP6 chromosome I, complete sequence',\n", |
||
| 4726 | " 'id': 'NC_004459.3',\n", |
||
| 4727 | " 'name': 'NC_004459.3'},\n", |
||
| 4728 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000039765.1_ASM3976v1_genomic.fna',\n", |
||
| 4729 | " 'description': 'NC_004460.2 Vibrio vulnificus CMCP6 chromosome II, complete sequence',\n", |
||
| 4730 | " 'id': 'NC_004460.2',\n", |
||
| 4731 | " 'name': 'NC_004460.2'},\n", |
||
| 4732 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000091725.1_ASM9172v1_genomic.fna',\n", |
||
| 4733 | " 'description': 'NC_014215.1 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome',\n", |
||
| 4734 | " 'id': 'NC_014215.1',\n", |
||
| 4735 | " 'name': 'NC_014215.1'},\n", |
||
| 4736 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001723525.1_ASM172352v1_genomic.fna',\n", |
||
| 4737 | " 'description': 'NZ_CP017107.1 Lactobacillus salivarius strain CICC 23174 chromosome, complete genome',\n", |
||
| 4738 | " 'id': 'NZ_CP017107.1',\n", |
||
| 4739 | " 'name': 'NZ_CP017107.1'},\n", |
||
| 4740 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000626355.1_ASM62635v1_genomic.fna',\n", |
||
| 4741 | " 'description': 'NZ_CP007253.1 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20111174, complete genome',\n", |
||
| 4742 | " 'id': 'NZ_CP007253.1',\n", |
||
| 4743 | " 'name': 'NZ_CP007253.1'},\n", |
||
| 4744 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003627055.1_ASM362705v1_genomic.fna',\n", |
||
| 4745 | " 'description': 'NZ_CP032624.1 Gryllotalpicola sp. 2DFW10M-5 chromosome, complete genome',\n", |
||
| 4746 | " 'id': 'NZ_CP032624.1',\n", |
||
| 4747 | " 'name': 'NZ_CP032624.1'},\n", |
||
| 4748 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002162055.1_ASM216205v1_genomic.fna',\n", |
||
| 4749 | " 'description': 'NZ_CP020858.1 Lactobacillus salivarius strain ZLS006 chromosome, complete genome',\n", |
||
| 4750 | " 'id': 'NZ_CP020858.1',\n", |
||
| 4751 | " 'name': 'NZ_CP020858.1'},\n", |
||
| 4752 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002848645.1_ASM284864v1_genomic.fna',\n", |
||
| 4753 | " 'description': 'NZ_CP023784.1 Enterococcus faecium strain Efaecium_ER04120.3A chromosome, complete genome',\n", |
||
| 4754 | " 'id': 'NZ_CP023784.1',\n", |
||
| 4755 | " 'name': 'NZ_CP023784.1'},\n", |
||
| 4756 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002900385.1_ASM290038v1_genomic.fna',\n", |
||
| 4757 | " 'description': 'NZ_CP025420.1 Streptococcus parauberis strain SPOF3K chromosome, complete genome',\n", |
||
| 4758 | " 'id': 'NZ_CP025420.1',\n", |
||
| 4759 | " 'name': 'NZ_CP025420.1'},\n", |
||
| 4760 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000212975.1_ASM21297v1_genomic.fna',\n", |
||
| 4761 | " 'description': 'NC_017223.1 Bordetella pertussis CS, complete genome',\n", |
||
| 4762 | " 'id': 'NC_017223.1',\n", |
||
| 4763 | " 'name': 'NC_017223.1'},\n", |
||
| 4764 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003860465.1_ASM386046v1_genomic.fna',\n", |
||
| 4765 | " 'description': 'NZ_CP034183.1 Deinococcus sp. S14-83 strain S14-83T chromosome 1, complete sequence',\n", |
||
| 4766 | " 'id': 'NZ_CP034183.1',\n", |
||
| 4767 | " 'name': 'NZ_CP034183.1'},\n", |
||
| 4768 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003860465.1_ASM386046v1_genomic.fna',\n", |
||
| 4769 | " 'description': 'NZ_CP034184.1 Deinococcus sp. S14-83 strain S14-83T chromosome 2, complete sequence',\n", |
||
| 4770 | " 'id': 'NZ_CP034184.1',\n", |
||
| 4771 | " 'name': 'NZ_CP034184.1'},\n", |
||
| 4772 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003076555.1_ASM307655v1_genomic.fna',\n", |
||
| 4773 | " 'description': 'NZ_CP026495.1 Klebsiella pneumoniae strain 616 chromosome, complete genome',\n", |
||
| 4774 | " 'id': 'NZ_CP026495.1',\n", |
||
| 4775 | " 'name': 'NZ_CP026495.1'},\n", |
||
| 4776 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000007245.1_ASM724v1_genomic.fna',\n", |
||
| 4777 | " 'description': 'NC_004556.1 Xylella fastidiosa Temecula1, complete genome',\n", |
||
| 4778 | " 'id': 'NC_004556.1',\n", |
||
| 4779 | " 'name': 'NC_004556.1'},\n", |
||
| 4780 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000196835.1_ASM19683v1_genomic.fna',\n", |
||
| 4781 | " 'description': 'NC_014318.1 Amycolatopsis mediterranei U32 chromosome, complete genome',\n", |
||
| 4782 | " 'id': 'NC_014318.1',\n", |
||
| 4783 | " 'name': 'NC_014318.1'},\n", |
||
| 4784 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000257275.1_ASM25727v1_genomic.fna',\n", |
||
| 4785 | " 'description': 'NC_017663.1 Escherichia coli P12b, complete genome',\n", |
||
| 4786 | " 'id': 'NC_017663.1',\n", |
||
| 4787 | " 'name': 'NC_017663.1'},\n", |
||
| 4788 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000023285.1_ASM2328v1_genomic.fna',\n", |
||
| 4789 | " 'description': 'NC_013162.1 Capnocytophaga ochracea DSM 7271, complete genome',\n", |
||
| 4790 | " 'id': 'NC_013162.1',\n", |
||
| 4791 | " 'name': 'NC_013162.1'},\n", |
||
| 4792 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000816365.1_ASM81636v1_genomic.fna',\n", |
||
| 4793 | " 'description': 'NZ_CP007775.1 Campylobacter lari NCTC 11845 chromosome, complete genome',\n", |
||
| 4794 | " 'id': 'NZ_CP007775.1',\n", |
||
| 4795 | " 'name': 'NZ_CP007775.1'},\n", |
||
| 4796 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001543105.1_ASM154310v1_genomic.fna',\n", |
||
| 4797 | " 'description': 'NZ_CP014159.1 Aerococcus christensenii strain CCUG28831, complete genome',\n", |
||
| 4798 | " 'id': 'NZ_CP014159.1',\n", |
||
| 4799 | " 'name': 'NZ_CP014159.1'},\n", |
||
| 4800 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001987755.1_ASM198775v1_genomic.fna',\n", |
||
| 4801 | " 'description': 'NZ_CP011755.1 Bordetella pertussis strain J023, complete genome',\n", |
||
| 4802 | " 'id': 'NZ_CP011755.1',\n", |
||
| 4803 | " 'name': 'NZ_CP011755.1'},\n", |
||
| 4804 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001721865.1_ASM172186v1_genomic.fna',\n", |
||
| 4805 | " 'description': 'NZ_CP013136.1 Herbaspirillum seropedicae strain AU14040, complete genome',\n", |
||
| 4806 | " 'id': 'NZ_CP013136.1',\n", |
||
| 4807 | " 'name': 'NZ_CP013136.1'},\n", |
||
| 4808 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001119245.2_76_1292_genomic.fna',\n", |
||
| 4809 | " 'description': 'NZ_LT904887.1 Salmonella enterica subsp. enterica serovar Typhi strain 76-1292 genome assembly, chromosome: 1',\n", |
||
| 4810 | " 'id': 'NZ_LT904887.1',\n", |
||
| 4811 | " 'name': 'NZ_LT904887.1'},\n", |
||
| 4812 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004114755.1_ASM411475v1_genomic.fna',\n", |
||
| 4813 | " 'description': 'NZ_CP035307.1 Lactobacillus helveticus strain IDCC3801 chromosome, complete genome',\n", |
||
| 4814 | " 'id': 'NZ_CP035307.1',\n", |
||
| 4815 | " 'name': 'NZ_CP035307.1'},\n", |
||
| 4816 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000961415.1_ASM96141v1_genomic.fna',\n", |
||
| 4817 | " 'description': 'NZ_CP009028.1 Xanthomonas citri subsp. citri strain 5208, complete genome',\n", |
||
| 4818 | " 'id': 'NZ_CP009028.1',\n", |
||
| 4819 | " 'name': 'NZ_CP009028.1'},\n", |
||
| 4820 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000758645.1_ASM75864v1_genomic.fna',\n", |
||
| 4821 | " 'description': 'NZ_CP009284.1 Paenibacillus sp. FSL R7-0331, complete genome',\n", |
||
| 4822 | " 'id': 'NZ_CP009284.1',\n", |
||
| 4823 | " 'name': 'NZ_CP009284.1'},\n", |
||
| 4824 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000019045.1_ASM1904v1_genomic.fna',\n", |
||
| 4825 | " 'description': 'NC_011567.1 Anoxybacillus flavithermus WK1, complete genome',\n", |
||
| 4826 | " 'id': 'NC_011567.1',\n", |
||
| 4827 | " 'name': 'NC_011567.1'},\n", |
||
| 4828 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000832785.1_ASM83278v1_genomic.fna',\n", |
||
| 4829 | " 'description': 'NZ_CP009598.1 Bacillus anthracis str. V770-NP-1R, complete genome',\n", |
||
| 4830 | " 'id': 'NZ_CP009598.1',\n", |
||
| 4831 | " 'name': 'NZ_CP009598.1'},\n", |
||
| 4832 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001983995.1_ASM198399v1_genomic.fna',\n", |
||
| 4833 | " 'description': 'NZ_CP019450.1 Halioglobus japonicus strain NBRC 107739 chromosome, complete genome',\n", |
||
| 4834 | " 'id': 'NZ_CP019450.1',\n", |
||
| 4835 | " 'name': 'NZ_CP019450.1'},\n", |
||
| 4836 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000019705.1_ASM1970v1_genomic.fna',\n", |
||
| 4837 | " 'description': 'NC_011244.1 Borrelia recurrentis A1, complete genome',\n", |
||
| 4838 | " 'id': 'NC_011244.1',\n", |
||
| 4839 | " 'name': 'NC_011244.1'},\n", |
||
| 4840 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660745.1_57728_G01-3_genomic.fna',\n", |
||
| 4841 | " 'description': 'NZ_LR215048.1 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1',\n", |
||
| 4842 | " 'id': 'NZ_LR215048.1',\n", |
||
| 4843 | " 'name': 'NZ_LR215048.1'},\n", |
||
| 4844 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900095215.1_PPGSP_Ewo1_chr_genomic.fna',\n", |
||
| 4845 | " 'description': 'NZ_LT606949.1 Polynucleobacter necessarius isolate PPGSP7 genome assembly, chromosome: I',\n", |
||
| 4846 | " 'id': 'NZ_LT606949.1',\n", |
||
| 4847 | " 'name': 'NZ_LT606949.1'},\n", |
||
| 4848 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002156805.1_ASM215680v1_genomic.fna',\n", |
||
| 4849 | " 'description': 'NZ_CP021252.1 Corynebacterium striatum strain KC-Na-01 chromosome, complete genome',\n", |
||
| 4850 | " 'id': 'NZ_CP021252.1',\n", |
||
| 4851 | " 'name': 'NZ_CP021252.1'},\n", |
||
| 4852 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003967115.1_ASM396711v1_genomic.fna',\n", |
||
| 4853 | " 'description': 'NZ_AP018562.1 Staphylococcus argenteus 58113 DNA, complete genome',\n", |
||
| 4854 | " 'id': 'NZ_AP018562.1',\n", |
||
| 4855 | " 'name': 'NZ_AP018562.1'},\n", |
||
| 4856 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002073975.1_ASM207397v1_genomic.fna',\n", |
||
| 4857 | " 'description': 'NZ_CP020384.1 Rhodovulum sp. MB263 chromosome, complete genome',\n", |
||
| 4858 | " 'id': 'NZ_CP020384.1',\n", |
||
| 4859 | " 'name': 'NZ_CP020384.1'},\n", |
||
| 4860 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003606365.1_ASM360636v1_genomic.fna',\n", |
||
| 4861 | " 'description': 'NZ_CP031933.1 Lactobacillus sp. HBUAS52074 chromosome, complete genome',\n", |
||
| 4862 | " 'id': 'NZ_CP031933.1',\n", |
||
| 4863 | " 'name': 'NZ_CP031933.1'},\n", |
||
| 4864 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003369735.1_ASM336973v1_genomic.fna',\n", |
||
| 4865 | " 'description': 'NZ_CP030913.1 Pseudomonas aeruginosa strain Y89 chromosome, complete genome',\n", |
||
| 4866 | " 'id': 'NZ_CP030913.1',\n", |
||
| 4867 | " 'name': 'NZ_CP030913.1'},\n", |
||
| 4868 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001506525.1_ASM150652v1_genomic.fna',\n", |
||
| 4869 | " 'description': 'NZ_CP010492.1 Campylobacter jejuni strain CJ677CC531, complete genome',\n", |
||
| 4870 | " 'id': 'NZ_CP010492.1',\n", |
||
| 4871 | " 'name': 'NZ_CP010492.1'},\n", |
||
| 4872 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003003815.1_ASM300381v1_genomic.fna',\n", |
||
| 4873 | " 'description': 'NZ_CP021269.1 Legionella pneumophila subsp. pneumophila strain Bellingham 1 (D-7473) chromosome, complete genome',\n", |
||
| 4874 | " 'id': 'NZ_CP021269.1',\n", |
||
| 4875 | " 'name': 'NZ_CP021269.1'},\n", |
||
| 4876 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000441615.1_ASM44161v1_genomic.fna',\n", |
||
| 4877 | " 'description': 'NC_021887.1 Chlamydia trachomatis RC-L2(s)/46, complete genome',\n", |
||
| 4878 | " 'id': 'NC_021887.1',\n", |
||
| 4879 | " 'name': 'NC_021887.1'},\n", |
||
| 4880 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000185905.1_ASM18590v1_genomic.fna',\n", |
||
| 4881 | " 'description': 'NC_014923.1 Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete genome',\n", |
||
| 4882 | " 'id': 'NC_014923.1',\n", |
||
| 4883 | " 'name': 'NC_014923.1'},\n", |
||
| 4884 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000800255.1_ASM80025v1_genomic.fna',\n", |
||
| 4885 | " 'description': 'NZ_CP009747.1 Pseudomonas parafulva strain CRS01-1, complete genome',\n", |
||
| 4886 | " 'id': 'NZ_CP009747.1',\n", |
||
| 4887 | " 'name': 'NZ_CP009747.1'},\n", |
||
| 4888 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003955905.1_ASM395590v1_genomic.fna',\n", |
||
| 4889 | " 'description': 'NZ_CP034410.1 Corynebacterium pseudotuberculosis strain OVIAF1 chromosome, complete genome',\n", |
||
| 4890 | " 'id': 'NZ_CP034410.1',\n", |
||
| 4891 | " 'name': 'NZ_CP034410.1'},\n", |
||
| 4892 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635625.1_31436_B01_genomic.fna',\n", |
||
| 4893 | " 'description': 'NZ_LR134151.1 Serratia plymuthica strain NCTC8900 genome assembly, chromosome: 1',\n", |
||
| 4894 | " 'id': 'NZ_LR134151.1',\n", |
||
| 4895 | " 'name': 'NZ_LR134151.1'},\n", |
||
| 4896 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000283655.1_ASM28365v1_genomic.fna',\n", |
||
| 4897 | " 'description': 'NC_016622.1 Azospirillum lipoferum 4B main chromosome, complete genome',\n", |
||
| 4898 | " 'id': 'NC_016622.1',\n", |
||
| 4899 | " 'name': 'NC_016622.1'},\n", |
||
| 4900 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004015065.1_ASM401506v1_genomic.fna',\n", |
||
| 4901 | " 'description': 'NZ_CP025829.1 Akkermansia muciniphila strain AMDK-14 chromosome, complete genome',\n", |
||
| 4902 | " 'id': 'NZ_CP025829.1',\n", |
||
| 4903 | " 'name': 'NZ_CP025829.1'},\n", |
||
| 4904 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000724625.1_ASM72462v1_genomic.fna',\n", |
||
| 4905 | " 'description': 'NZ_CP007139.1 Fimbriimonas ginsengisoli Gsoil 348, complete genome',\n", |
||
| 4906 | " 'id': 'NZ_CP007139.1',\n", |
||
| 4907 | " 'name': 'NZ_CP007139.1'},\n", |
||
| 4908 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002208905.1_ASM220890v2_genomic.fna',\n", |
||
| 4909 | " 'description': 'NZ_CP022056.1 Staphylococcus saprophyticus strain FDAARGOS_336 chromosome, complete genome',\n", |
||
| 4910 | " 'id': 'NZ_CP022056.1',\n", |
||
| 4911 | " 'name': 'NZ_CP022056.1'},\n", |
||
| 4912 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000283975.1_ASM28397v1_genomic.fna',\n", |
||
| 4913 | " 'description': 'NC_016938.1 Melissococcus plutonius DAT561 DNA, complete genome',\n", |
||
| 4914 | " 'id': 'NC_016938.1',\n", |
||
| 4915 | " 'name': 'NC_016938.1'},\n", |
||
| 4916 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000191525.1_ASM19152v1_genomic.fna',\n", |
||
| 4917 | " 'description': 'NC_017518.1 Neisseria meningitidis NZ-05/33, complete genome',\n", |
||
| 4918 | " 'id': 'NC_017518.1',\n", |
||
| 4919 | " 'name': 'NC_017518.1'},\n", |
||
| 4920 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003798285.1_ASM379828v1_genomic.fna',\n", |
||
| 4921 | " 'description': 'NZ_CP033709.1 Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome',\n", |
||
| 4922 | " 'id': 'NZ_CP033709.1',\n", |
||
| 4923 | " 'name': 'NZ_CP033709.1'},\n", |
||
| 4924 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001610935.1_ASM161093v1_genomic.fna',\n", |
||
| 4925 | " 'description': 'NZ_CP012731.1 Streptococcus suis strain 90-1330, complete genome',\n", |
||
| 4926 | " 'id': 'NZ_CP012731.1',\n", |
||
| 4927 | " 'name': 'NZ_CP012731.1'},\n", |
||
| 4928 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637275.1_50465_C02_genomic.fna',\n", |
||
| 4929 | " 'description': 'NZ_LR134362.1 [Pasteurella] aerogenes strain NCTC13378 genome assembly, chromosome: 1',\n", |
||
| 4930 | " 'id': 'NZ_LR134362.1',\n", |
||
| 4931 | " 'name': 'NZ_LR134362.1'},\n", |
||
| 4932 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001596115.1_ASM159611v1_genomic.fna',\n", |
||
| 4933 | " 'description': 'NZ_CP014768.1 Shigella sp. PAMC 28760 chromosome, complete genome',\n", |
||
| 4934 | " 'id': 'NZ_CP014768.1',\n", |
||
| 4935 | " 'name': 'NZ_CP014768.1'},\n", |
||
| 4936 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000067165.1_ASM6716v1_genomic.fna',\n", |
||
| 4937 | " 'description': \"NC_010162.1 Sorangium cellulosum 'So ce 56' complete genome\",\n", |
||
| 4938 | " 'id': 'NC_010162.1',\n", |
||
| 4939 | " 'name': 'NC_010162.1'},\n", |
||
| 4940 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002117485.1_ASM211748v1_genomic.fna',\n", |
||
| 4941 | " 'description': 'NZ_CP021030.1 Rhizobium sp. NXC14 chromosome, complete genome',\n", |
||
| 4942 | " 'id': 'NZ_CP021030.1',\n", |
||
| 4943 | " 'name': 'NZ_CP021030.1'},\n", |
||
| 4944 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002968655.1_ASM296865v1_genomic.fna',\n", |
||
| 4945 | " 'description': 'NZ_CP027172.1 Pseudomonas aeruginosa strain AR_0353 chromosome, complete genome',\n", |
||
| 4946 | " 'id': 'NZ_CP027172.1',\n", |
||
| 4947 | " 'name': 'NZ_CP027172.1'},\n", |
||
| 4948 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003718515.1_ASM371851v1_genomic.fna',\n", |
||
| 4949 | " 'description': 'NZ_CP029855.1 Salmonella enterica subsp. enterica serovar Typhi strain 343077_292148 chromosome, complete genome',\n", |
||
| 4950 | " 'id': 'NZ_CP029855.1',\n", |
||
| 4951 | " 'name': 'NZ_CP029855.1'},\n", |
||
| 4952 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000019325.1_ASM1932v1_genomic.fna',\n", |
||
| 4953 | " 'description': 'NC_010513.1 Xylella fastidiosa M12, complete genome',\n", |
||
| 4954 | " 'id': 'NC_010513.1',\n", |
||
| 4955 | " 'name': 'NC_010513.1'},\n", |
||
| 4956 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003687485.1_ASM368748v1_genomic.fna',\n", |
||
| 4957 | " 'description': 'NZ_CP032050.1 Euzebyella marina strain RN62 chromosome, complete genome',\n", |
||
| 4958 | " 'id': 'NZ_CP032050.1',\n", |
||
| 4959 | " 'name': 'NZ_CP032050.1'},\n", |
||
| 4960 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001518875.1_ASM151887v1_genomic.fna',\n", |
||
| 4961 | " 'description': 'NZ_CP011145.1 Bacillus cereus strain FORC_013, complete sequence',\n", |
||
| 4962 | " 'id': 'NZ_CP011145.1',\n", |
||
| 4963 | " 'name': 'NZ_CP011145.1'},\n", |
||
| 4964 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004089895.1_ASM408989v1_genomic.fna',\n", |
||
| 4965 | " 'description': 'NZ_CP035129.1 Kosakonia cowanii strain FBS 223 chromosome, complete genome',\n", |
||
| 4966 | " 'id': 'NZ_CP035129.1',\n", |
||
| 4967 | " 'name': 'NZ_CP035129.1'},\n", |
||
| 4968 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002269385.1_ASM226938v1_genomic.fna',\n", |
||
| 4969 | " 'description': 'NZ_CP022957.1 Maribacter cobaltidurans strain B1 chromosome, complete genome',\n", |
||
| 4970 | " 'id': 'NZ_CP022957.1',\n", |
||
| 4971 | " 'name': 'NZ_CP022957.1'},\n", |
||
| 4972 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900474715.1_41004_D01_genomic.fna',\n", |
||
| 4973 | " 'description': 'NZ_LS483311.1 Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1',\n", |
||
| 4974 | " 'id': 'NZ_LS483311.1',\n", |
||
| 4975 | " 'name': 'NZ_LS483311.1'},\n", |
||
| 4976 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000025585.1_ASM2558v1_genomic.fna',\n", |
||
| 4977 | " 'description': 'NC_013890.1 Dehalococcoides mccartyi GT, complete genome',\n", |
||
| 4978 | " 'id': 'NC_013890.1',\n", |
||
| 4979 | " 'name': 'NC_013890.1'},\n", |
||
| 4980 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003408515.1_ASM340851v1_genomic.fna',\n", |
||
| 4981 | " 'description': 'NZ_CP030865.1 Micromonospora sp. B006 chromosome, complete genome',\n", |
||
| 4982 | " 'id': 'NZ_CP030865.1',\n", |
||
| 4983 | " 'name': 'NZ_CP030865.1'},\n", |
||
| 4984 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000750315.1_ASM75031v1_genomic.fna',\n", |
||
| 4985 | " 'description': 'NZ_CP008943.1 Yersinia pseudotuberculosis strain ATCC 6904, complete genome',\n", |
||
| 4986 | " 'id': 'NZ_CP008943.1',\n", |
||
| 4987 | " 'name': 'NZ_CP008943.1'},\n", |
||
| 4988 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000217615.1_ASM21761v1_genomic.fna',\n", |
||
| 4989 | " 'description': 'NC_017535.1 Propionibacterium acnes 6609, complete genome',\n", |
||
| 4990 | " 'id': 'NC_017535.1',\n", |
||
| 4991 | " 'name': 'NC_017535.1'},\n", |
||
| 4992 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003971565.1_ASM397156v1_genomic.fna',\n", |
||
| 4993 | " 'description': 'NZ_CP026503.1 Lactobacillus crispatus strain AB70 chromosome, complete genome',\n", |
||
| 4994 | " 'id': 'NZ_CP026503.1',\n", |
||
| 4995 | " 'name': 'NZ_CP026503.1'},\n", |
||
| 4996 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900607285.1_BPH3244_genomic.fna',\n", |
||
| 4997 | " 'description': 'NZ_LR027877.1 Staphylococcus aureus isolate BPH3244 genome assembly, chromosome: 1',\n", |
||
| 4998 | " 'id': 'NZ_LR027877.1',\n", |
||
| 4999 | " 'name': 'NZ_LR027877.1'},\n", |
||
| 5000 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001986995.1_ASM198699v1_genomic.fna',\n", |
||
| 5001 | " 'description': 'NZ_CP011717.1 Bordetella pertussis strain I089, complete genome',\n", |
||
| 5002 | " 'id': 'NZ_CP011717.1',\n", |
||
| 5003 | " 'name': 'NZ_CP011717.1'},\n", |
||
| 5004 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001275565.2_ASM127556v2_genomic.fna',\n", |
||
| 5005 | " 'description': 'NZ_CP012506.2 Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome',\n", |
||
| 5006 | " 'id': 'NZ_CP012506.2',\n", |
||
| 5007 | " 'name': 'NZ_CP012506.2'},\n", |
||
| 5008 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003323815.1_ASM332381v1_genomic.fna',\n", |
||
| 5009 | " 'description': 'NZ_CP030880.1 Acinetobacter haemolyticus strain HW-2A chromosome, complete genome',\n", |
||
| 5010 | " 'id': 'NZ_CP030880.1',\n", |
||
| 5011 | " 'name': 'NZ_CP030880.1'},\n", |
||
| 5012 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002009275.1_ASM200927v1_genomic.fna',\n", |
||
| 5013 | " 'description': 'NZ_CP019639.1 Mycoplasma bovis strain 08M, complete genome',\n", |
||
| 5014 | " 'id': 'NZ_CP019639.1',\n", |
||
| 5015 | " 'name': 'NZ_CP019639.1'},\n", |
||
| 5016 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002850675.3_ASM285067v4_genomic.fna',\n", |
||
| 5017 | " 'description': 'NZ_CP025950.2 Escherichia coli strain SCEC020023 chromosome, complete genome',\n", |
||
| 5018 | " 'id': 'NZ_CP025950.2',\n", |
||
| 5019 | " 'name': 'NZ_CP025950.2'},\n", |
||
| 5020 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003855535.1_ASM385553v1_genomic.fna',\n", |
||
| 5021 | " 'description': 'NZ_CP034076.1 Klebsiella pneumoniae strain KP17-15 chromosome, complete genome',\n", |
||
| 5022 | " 'id': 'NZ_CP034076.1',\n", |
||
| 5023 | " 'name': 'NZ_CP034076.1'},\n", |
||
| 5024 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000147775.2_ASM14777v3_genomic.fna',\n", |
||
| 5025 | " 'description': 'NC_017322.1 Sinorhizobium meliloti BL225C, complete genome',\n", |
||
| 5026 | " 'id': 'NC_017322.1',\n", |
||
| 5027 | " 'name': 'NC_017322.1'},\n", |
||
| 5028 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000772185.1_ASM77218v1_genomic.fna',\n", |
||
| 5029 | " 'description': 'NZ_CP009612.1 Streptococcus pyogenes strain HKU360, complete genome',\n", |
||
| 5030 | " 'id': 'NZ_CP009612.1',\n", |
||
| 5031 | " 'name': 'NZ_CP009612.1'},\n", |
||
| 5032 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004117035.1_ASM411703v1_genomic.fna',\n", |
||
| 5033 | " 'description': 'NZ_CP026367.1 Sulfitobacter donghicola strain SB1155 chromosome, complete genome',\n", |
||
| 5034 | " 'id': 'NZ_CP026367.1',\n", |
||
| 5035 | " 'name': 'NZ_CP026367.1'},\n", |
||
| 5036 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002286335.1_ASM228633v1_genomic.fna',\n", |
||
| 5037 | " 'description': 'NZ_CP017121.1 Bordetella pertussis strain J172 chromosome, complete genome',\n", |
||
| 5038 | " 'id': 'NZ_CP017121.1',\n", |
||
| 5039 | " 'name': 'NZ_CP017121.1'},\n", |
||
| 5040 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002763925.1_ASM276392v1_genomic.fna',\n", |
||
| 5041 | " 'description': 'NZ_CP024705.1 Fusobacterium periodonticum strain KCOM 2653 chromosome, complete genome',\n", |
||
| 5042 | " 'id': 'NZ_CP024705.1',\n", |
||
| 5043 | " 'name': 'NZ_CP024705.1'},\n", |
||
| 5044 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002021775.1_ASM202177v1_genomic.fna',\n", |
||
| 5045 | " 'description': 'NZ_CP019946.1 Dehalococcoides mccartyi strain KBDCA3 chromosome, complete genome',\n", |
||
| 5046 | " 'id': 'NZ_CP019946.1',\n", |
||
| 5047 | " 'name': 'NZ_CP019946.1'},\n", |
||
| 5048 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637205.1_50279_G01_genomic.fna',\n", |
||
| 5049 | " 'description': 'NZ_LR134355.1 Mycolicibacterium chitae strain NCTC10485 genome assembly, chromosome: 1',\n", |
||
| 5050 | " 'id': 'NZ_LR134355.1',\n", |
||
| 5051 | " 'name': 'NZ_LR134355.1'},\n", |
||
| 5052 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000696505.1_ASM69650v1_genomic.fna',\n", |
||
| 5053 | " 'description': 'NZ_CP006770.1 Streptococcus equi subsp. zooepidemicus CY, complete genome',\n", |
||
| 5054 | " 'id': 'NZ_CP006770.1',\n", |
||
| 5055 | " 'name': 'NZ_CP006770.1'},\n", |
||
| 5056 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000163895.2_ASM16389v2_genomic.fna',\n", |
||
| 5057 | " 'description': 'NC_016630.1 Filifactor alocis ATCC 35896, complete genome',\n", |
||
| 5058 | " 'id': 'NC_016630.1',\n", |
||
| 5059 | " 'name': 'NC_016630.1'},\n", |
||
| 5060 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000317305.3_ASM31730v3_genomic.fna',\n", |
||
| 5061 | " 'description': 'NC_023036.2 Mycobacterium neoaurum VKM Ac-1815D, complete genome',\n", |
||
| 5062 | " 'id': 'NC_023036.2',\n", |
||
| 5063 | " 'name': 'NC_023036.2'},\n", |
||
| 5064 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003864055.1_ASM386405v1_genomic.fna',\n", |
||
| 5065 | " 'description': 'NZ_CP034232.1 Salmonella enterica strain ATCC 8387 chromosome, complete genome',\n", |
||
| 5066 | " 'id': 'NZ_CP034232.1',\n", |
||
| 5067 | " 'name': 'NZ_CP034232.1'},\n", |
||
| 5068 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000091565.1_ASM9156v1_genomic.fna',\n", |
||
| 5069 | " 'description': 'NC_013961.1 Erwinia amylovora CFBP1430 complete genome',\n", |
||
| 5070 | " 'id': 'NC_013961.1',\n", |
||
| 5071 | " 'name': 'NC_013961.1'},\n", |
||
| 5072 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001190865.1_ASM119086v1_genomic.fna',\n", |
||
| 5073 | " 'description': 'NZ_CP011328.1 Streptococcus agalactiae strain GX026, complete genome',\n", |
||
| 5074 | " 'id': 'NZ_CP011328.1',\n", |
||
| 5075 | " 'name': 'NZ_CP011328.1'},\n", |
||
| 5076 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001729245.1_ASM172924v1_genomic.fna',\n", |
||
| 5077 | " 'description': 'NZ_CP015217.1 Leptospira alstonii strain GWTS #1 chromosome 1, complete sequence',\n", |
||
| 5078 | " 'id': 'NZ_CP015217.1',\n", |
||
| 5079 | " 'name': 'NZ_CP015217.1'},\n", |
||
| 5080 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001729245.1_ASM172924v1_genomic.fna',\n", |
||
| 5081 | " 'description': 'NZ_CP015218.1 Leptospira alstonii strain GWTS #1 chromosome 2, complete sequence',\n", |
||
| 5082 | " 'id': 'NZ_CP015218.1',\n", |
||
| 5083 | " 'name': 'NZ_CP015218.1'},\n", |
||
| 5084 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001879565.1_ASM187956v1_genomic.fna',\n", |
||
| 5085 | " 'description': 'NZ_CP009764.1 Ralstonia solanacearum OE1-1, complete genome',\n", |
||
| 5086 | " 'id': 'NZ_CP009764.1',\n", |
||
| 5087 | " 'name': 'NZ_CP009764.1'},\n", |
||
| 5088 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001879565.1_ASM187956v1_genomic.fna',\n", |
||
| 5089 | " 'description': 'NZ_CP009763.1 Ralstonia solanacearum OE1-1 plasmid, complete sequence',\n", |
||
| 5090 | " 'id': 'NZ_CP009763.1',\n", |
||
| 5091 | " 'name': 'NZ_CP009763.1'},\n", |
||
| 5092 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002848345.1_ASM284834v1_genomic.fna',\n", |
||
| 5093 | " 'description': 'NZ_CP025429.1 Chromobacterium sp. ATCC 53434 chromosome, complete genome',\n", |
||
| 5094 | " 'id': 'NZ_CP025429.1',\n", |
||
| 5095 | " 'name': 'NZ_CP025429.1'},\n", |
||
| 5096 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000062885.1_ASM6288v1_genomic.fna',\n", |
||
| 5097 | " 'description': 'NC_009142.1 Saccharopolyspora erythraea NRRL2338 complete genome',\n", |
||
| 5098 | " 'id': 'NC_009142.1',\n", |
||
| 5099 | " 'name': 'NC_009142.1'},\n", |
||
| 5100 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003790525.1_ASM379052v1_genomic.fna',\n", |
||
| 5101 | " 'description': 'NZ_CP033635.1 Escherichia coli isolate ECCNB12-2 chromosome, complete genome',\n", |
||
| 5102 | " 'id': 'NZ_CP033635.1',\n", |
||
| 5103 | " 'name': 'NZ_CP033635.1'},\n", |
||
| 5104 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001900925.1_ASM190092v1_genomic.fna',\n", |
||
| 5105 | " 'description': 'NZ_CP010230.1 Escherichia coli strain S21, complete genome',\n", |
||
| 5106 | " 'id': 'NZ_CP010230.1',\n", |
||
| 5107 | " 'name': 'NZ_CP010230.1'},\n", |
||
| 5108 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001683195.1_ASM168319v1_genomic.fna',\n", |
||
| 5109 | " 'description': 'NZ_CP012723.1 Bacillus anthracis strain PR06, complete genome',\n", |
||
| 5110 | " 'id': 'NZ_CP012723.1',\n", |
||
| 5111 | " 'name': 'NZ_CP012723.1'},\n", |
||
| 5112 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003290405.1_ASM329040v1_genomic.fna',\n", |
||
| 5113 | " 'description': 'NZ_CP030760.1 Rhizobium leguminosarum strain ATCC 14479 chromosome, complete genome',\n", |
||
| 5114 | " 'id': 'NZ_CP030760.1',\n", |
||
| 5115 | " 'name': 'NZ_CP030760.1'},\n", |
||
| 5116 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000520895.1_ASM52089v1_genomic.fna',\n", |
||
| 5117 | " 'description': 'NZ_CP004023.1 Burkholderia pseudomallei MSHR511 chromosome 1, complete sequence',\n", |
||
| 5118 | " 'id': 'NZ_CP004023.1',\n", |
||
| 5119 | " 'name': 'NZ_CP004023.1'},\n", |
||
| 5120 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000520895.1_ASM52089v1_genomic.fna',\n", |
||
| 5121 | " 'description': 'NZ_CP004024.1 Burkholderia pseudomallei MSHR511 chromosome 2, complete sequence',\n", |
||
| 5122 | " 'id': 'NZ_CP004024.1',\n", |
||
| 5123 | " 'name': 'NZ_CP004024.1'},\n", |
||
| 5124 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000803645.1_ASM80364v1_genomic.fna',\n", |
||
| 5125 | " 'description': 'NZ_CP009122.1 Sphingopyxis fribergensis strain Kp5.2, complete genome',\n", |
||
| 5126 | " 'id': 'NZ_CP009122.1',\n", |
||
| 5127 | " 'name': 'NZ_CP009122.1'},\n", |
||
| 5128 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000382905.1_ASM38290v1_genomic.fna',\n", |
||
| 5129 | " 'description': 'NC_020519.1 Corynebacterium glutamicum K051 complete genome, strain ATCC 13032, sub-strain K051',\n", |
||
| 5130 | " 'id': 'NC_020519.1',\n", |
||
| 5131 | " 'name': 'NC_020519.1'},\n", |
||
| 5132 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003444775.1_ASM344477v1_genomic.fna',\n", |
||
| 5133 | " 'description': 'NZ_CP021081.1 Deinococcus ficus strain CC-FR2-10 chromosome, complete genome',\n", |
||
| 5134 | " 'id': 'NZ_CP021081.1',\n", |
||
| 5135 | " 'name': 'NZ_CP021081.1'},\n", |
||
| 5136 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002881865.1_ASM288186v1_genomic.fna',\n", |
||
| 5137 | " 'description': 'NZ_CP019808.1 Streptococcus agalactiae strain SA75, complete genome',\n", |
||
| 5138 | " 'id': 'NZ_CP019808.1',\n", |
||
| 5139 | " 'name': 'NZ_CP019808.1'},\n", |
||
| 5140 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000439555.1_ASM43955v1_genomic.fna',\n", |
||
| 5141 | " 'description': 'NC_021712.1 Alteromonas mediterranea U8, complete genome',\n", |
||
| 5142 | " 'id': 'NC_021712.1',\n", |
||
| 5143 | " 'name': 'NC_021712.1'},\n", |
||
| 5144 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003319235.1_ASM331923v1_genomic.fna',\n", |
||
| 5145 | " 'description': 'NZ_CP030861.1 Pseudomonas aeruginosa strain HS9 chromosome, complete genome',\n", |
||
| 5146 | " 'id': 'NZ_CP030861.1',\n", |
||
| 5147 | " 'name': 'NZ_CP030861.1'},\n", |
||
| 5148 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000737535.1_ASM73753v1_genomic.fna',\n", |
||
| 5149 | " 'description': 'NZ_CP006269.1 Synechococcus sp. KORDI-100, complete genome',\n", |
||
| 5150 | " 'id': 'NZ_CP006269.1',\n", |
||
| 5151 | " 'name': 'NZ_CP006269.1'},\n", |
||
| 5152 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000746505.1_ASM74650v1_genomic.fna',\n", |
||
| 5153 | " 'description': 'NZ_CP007499.1 Staphylococcus aureus strain 2395 USA500, complete genome',\n", |
||
| 5154 | " 'id': 'NZ_CP007499.1',\n", |
||
| 5155 | " 'name': 'NZ_CP007499.1'},\n", |
||
| 5156 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001185215.1_ASM118521v1_genomic.fna',\n", |
||
| 5157 | " 'description': 'NZ_CP011790.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SEE1, complete genome',\n", |
||
| 5158 | " 'id': 'NZ_CP011790.1',\n", |
||
| 5159 | " 'name': 'NZ_CP011790.1'},\n", |
||
| 5160 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002162355.1_ASM216235v1_genomic.fna',\n", |
||
| 5161 | " 'description': 'NZ_CP021434.1 Tumebacillus sp. AR23208 chromosome, complete genome',\n", |
||
| 5162 | " 'id': 'NZ_CP021434.1',\n", |
||
| 5163 | " 'name': 'NZ_CP021434.1'},\n", |
||
| 5164 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000018225.1_ASM1822v1_genomic.fna',\n", |
||
| 5165 | " 'description': \"NC_009882.1 Rickettsia rickettsii str. 'Sheila Smith', complete genome\",\n", |
||
| 5166 | " 'id': 'NC_009882.1',\n", |
||
| 5167 | " 'name': 'NC_009882.1'},\n", |
||
| 5168 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002059225.1_ASM205922v1_genomic.fna',\n", |
||
| 5169 | " 'description': 'NZ_CP020345.1 Pasteurella multocida subsp. multocida strain CIRMBP-0884 chromosome, complete genome',\n", |
||
| 5170 | " 'id': 'NZ_CP020345.1',\n", |
||
| 5171 | " 'name': 'NZ_CP020345.1'},\n", |
||
| 5172 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004135815.1_ASM413581v1_genomic.fna',\n", |
||
| 5173 | " 'description': 'NZ_CP034404.1 Escherichia coli strain CRE10 chromosome, complete genome',\n", |
||
| 5174 | " 'id': 'NZ_CP034404.1',\n", |
||
| 5175 | " 'name': 'NZ_CP034404.1'},\n", |
||
| 5176 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001587155.1_ASM158715v1_genomic.fna',\n", |
||
| 5177 | " 'description': 'NZ_CP012943.1 Ralstonia solanacearum strain IBSBF1503, complete genome',\n", |
||
| 5178 | " 'id': 'NZ_CP012943.1',\n", |
||
| 5179 | " 'name': 'NZ_CP012943.1'},\n", |
||
| 5180 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001587155.1_ASM158715v1_genomic.fna',\n", |
||
| 5181 | " 'description': 'NZ_CP012944.1 Ralstonia solanacearum strain IBSBF1503 plasmid, complete sequence',\n", |
||
| 5182 | " 'id': 'NZ_CP012944.1',\n", |
||
| 5183 | " 'name': 'NZ_CP012944.1'},\n", |
||
| 5184 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003410255.1_ASM341025v1_genomic.fna',\n", |
||
| 5185 | " 'description': 'NZ_CP031642.1 Bacillus anthracis strain MCCC 1A02161 chromosome, complete genome',\n", |
||
| 5186 | " 'id': 'NZ_CP031642.1',\n", |
||
| 5187 | " 'name': 'NZ_CP031642.1'},\n", |
||
| 5188 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002209205.2_ASM220920v2_genomic.fna',\n", |
||
| 5189 | " 'description': 'NZ_CP022069.2 Salmonella enterica strain FDAARGOS_313 chromosome, complete genome',\n", |
||
| 5190 | " 'id': 'NZ_CP022069.2',\n", |
||
| 5191 | " 'name': 'NZ_CP022069.2'},\n", |
||
| 5192 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002944845.1_ASM294484v1_genomic.fna',\n", |
||
| 5193 | " 'description': 'NZ_CP026586.1 Klebsiella pneumoniae strain NUHL30457 chromosome, complete genome',\n", |
||
| 5194 | " 'id': 'NZ_CP026586.1',\n", |
||
| 5195 | " 'name': 'NZ_CP026586.1'},\n", |
||
| 5196 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000734975.2_ASM73497v2_genomic.fna',\n", |
||
| 5197 | " 'description': 'NZ_CP011052.1 Halomonas sp. KO116, complete genome',\n", |
||
| 5198 | " 'id': 'NZ_CP011052.1',\n", |
||
| 5199 | " 'name': 'NZ_CP011052.1'},\n", |
||
| 5200 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900120315.1_HE170_09_genomic.fna',\n", |
||
| 5201 | " 'description': 'NZ_LT635472.1 Helicobacter pylori isolate HE170/09 genome assembly, chromosome: I',\n", |
||
| 5202 | " 'id': 'NZ_LT635472.1',\n", |
||
| 5203 | " 'name': 'NZ_LT635472.1'},\n", |
||
| 5204 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001577305.1_ASM157730v1_genomic.fna',\n", |
||
| 5205 | " 'description': 'NZ_CP014518.1 Sinomonas atrocyanea strain KCTC 3377, complete genome',\n", |
||
| 5206 | " 'id': 'NZ_CP014518.1',\n", |
||
| 5207 | " 'name': 'NZ_CP014518.1'},\n", |
||
| 5208 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002055685.1_ASM205568v1_genomic.fna',\n", |
||
| 5209 | " 'description': 'NZ_CP020052.1 Proteus mirabilis strain AR_0059, complete genome',\n", |
||
| 5210 | " 'id': 'NZ_CP020052.1',\n", |
||
| 5211 | " 'name': 'NZ_CP020052.1'},\n", |
||
| 5212 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002949085.1_ASM294908v1_genomic.fna',\n", |
||
| 5213 | " 'description': 'NZ_CP026747.1 Devosia sp. I507 chromosome, complete genome',\n", |
||
| 5214 | " 'id': 'NZ_CP026747.1',\n", |
||
| 5215 | " 'name': 'NZ_CP026747.1'},\n", |
||
| 5216 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000576085.2_ASM57608v2_genomic.fna',\n", |
||
| 5217 | " 'description': 'NZ_CP003181.2 Granulibacter bethesdensis strain NIH3.1 chromosome, complete genome',\n", |
||
| 5218 | " 'id': 'NZ_CP003181.2',\n", |
||
| 5219 | " 'name': 'NZ_CP003181.2'},\n", |
||
| 5220 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001676825.1_ASM167682v1_genomic.fna',\n", |
||
| 5221 | " 'description': 'NZ_CP016159.1 Klebsiella pneumoniae strain TH1 chromosome, complete genome',\n", |
||
| 5222 | " 'id': 'NZ_CP016159.1',\n", |
||
| 5223 | " 'name': 'NZ_CP016159.1'},\n", |
||
| 5224 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002214625.1_ASM221462v2_genomic.fna',\n", |
||
| 5225 | " 'description': 'NZ_CP015994.1 Anaplasma ovis str. Haibei chromosome, complete genome',\n", |
||
| 5226 | " 'id': 'NZ_CP015994.1',\n", |
||
| 5227 | " 'name': 'NZ_CP015994.1'},\n", |
||
| 5228 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900659665.1_AUSMDU00008332_genomic.fna',\n", |
||
| 5229 | " 'description': 'NZ_LR213455.1 Shigella flexneri strain AUSMDU00008332 genome assembly, chromosome: 1',\n", |
||
| 5230 | " 'id': 'NZ_LR213455.1',\n", |
||
| 5231 | " 'name': 'NZ_LR213455.1'},\n", |
||
| 5232 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900659665.1_AUSMDU00008332_genomic.fna',\n", |
||
| 5233 | " 'description': 'NZ_LR213456.1 Shigella flexneri strain AUSMDU00008332 genome assembly, plasmid: 2',\n", |
||
| 5234 | " 'id': 'NZ_LR213456.1',\n", |
||
| 5235 | " 'name': 'NZ_LR213456.1'},\n", |
||
| 5236 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900659665.1_AUSMDU00008332_genomic.fna',\n", |
||
| 5237 | " 'description': 'NZ_LR213457.1 Shigella flexneri strain AUSMDU00008332 genome assembly, plasmid: 3',\n", |
||
| 5238 | " 'id': 'NZ_LR213457.1',\n", |
||
| 5239 | " 'name': 'NZ_LR213457.1'},\n", |
||
| 5240 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900476255.1_53750_A02_genomic.fna',\n", |
||
| 5241 | " 'description': 'NZ_LS483447.1 Porphyromonas crevioricanis strain NCTC12858 genome assembly, chromosome: 1',\n", |
||
| 5242 | " 'id': 'NZ_LS483447.1',\n", |
||
| 5243 | " 'name': 'NZ_LS483447.1'},\n", |
||
| 5244 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000164965.1_ASM16496v1_genomic.fna',\n", |
||
| 5245 | " 'description': 'NC_014616.1 Bifidobacterium bifidum S17, complete genome',\n", |
||
| 5246 | " 'id': 'NC_014616.1',\n", |
||
| 5247 | " 'name': 'NC_014616.1'},\n", |
||
| 5248 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003019115.1_ASM301911v1_genomic.fna',\n", |
||
| 5249 | " 'description': 'NZ_CP027462.1 Escherichia coli isolate 07-4299 chromosome, complete genome',\n", |
||
| 5250 | " 'id': 'NZ_CP027462.1',\n", |
||
| 5251 | " 'name': 'NZ_CP027462.1'},\n", |
||
| 5252 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000508245.1_ASM50824v1_genomic.fna',\n", |
||
| 5253 | " 'description': 'NC_023062.1 Mycoplasma ovis str. Michigan, complete genome',\n", |
||
| 5254 | " 'id': 'NC_023062.1',\n", |
||
| 5255 | " 'name': 'NC_023062.1'},\n", |
||
| 5256 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003018035.1_ASM301803v1_genomic.fna',\n", |
||
| 5257 | " 'description': 'NZ_CP027390.1 Escherichia coli strain 2015C-4944 chromosome, complete genome',\n", |
||
| 5258 | " 'id': 'NZ_CP027390.1',\n", |
||
| 5259 | " 'name': 'NZ_CP027390.1'},\n", |
||
| 5260 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004296475.1_ASM429647v1_genomic.fna',\n", |
||
| 5261 | " 'description': 'NZ_AP018162.1 Endosymbiont of Sipalinus gigas DNA, complete genome, isolate: NARSGI1',\n", |
||
| 5262 | " 'id': 'NZ_AP018162.1',\n", |
||
| 5263 | " 'name': 'NZ_AP018162.1'},\n", |
||
| 5264 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001548635.1_ASM154863v1_genomic.fna',\n", |
||
| 5265 | " 'description': 'NZ_CP014250.1 Listeria monocytogenes strain CFSAN010068, complete genome',\n", |
||
| 5266 | " 'id': 'NZ_CP014250.1',\n", |
||
| 5267 | " 'name': 'NZ_CP014250.1'},\n", |
||
| 5268 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001889505.1_ASM188950v1_genomic.fna',\n", |
||
| 5269 | " 'description': 'NZ_CP018191.1 Granulibacter bethesdensis strain NIH9.1 chromosome, complete genome',\n", |
||
| 5270 | " 'id': 'NZ_CP018191.1',\n", |
||
| 5271 | " 'name': 'NZ_CP018191.1'},\n", |
||
| 5272 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000006645.1_ASM664v1_genomic.fna',\n", |
||
| 5273 | " 'description': 'NC_004088.1 Yersinia pestis KIM10+, complete genome',\n", |
||
| 5274 | " 'id': 'NC_004088.1',\n", |
||
| 5275 | " 'name': 'NC_004088.1'},\n", |
||
| 5276 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000952035.2_ASM95203v2_genomic.fna',\n", |
||
| 5277 | " 'description': 'NZ_CP007699.2 Streptomyces lydicus strain A02 chromosome, complete genome',\n", |
||
| 5278 | " 'id': 'NZ_CP007699.2',\n", |
||
| 5279 | " 'name': 'NZ_CP007699.2'},\n", |
||
| 5280 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000008425.1_ASM842v1_genomic.fna',\n", |
||
| 5281 | " 'description': 'NC_006322.1 Bacillus licheniformis DSM 13 = ATCC 14580, complete genome',\n", |
||
| 5282 | " 'id': 'NC_006322.1',\n", |
||
| 5283 | " 'name': 'NC_006322.1'},\n", |
||
| 5284 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637765.1_52579_G01_genomic.fna',\n", |
||
| 5285 | " 'description': 'NZ_LR134395.1 Haemophilus aegyptius strain NCTC8134 genome assembly, chromosome: 1',\n", |
||
| 5286 | " 'id': 'NZ_LR134395.1',\n", |
||
| 5287 | " 'name': 'NZ_LR134395.1'},\n", |
||
| 5288 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001709275.1_ASM170927v1_genomic.fna',\n", |
||
| 5289 | " 'description': 'NZ_CP016923.1 Klebsiella pneumoniae isolate 11 chromosome, complete genome',\n", |
||
| 5290 | " 'id': 'NZ_CP016923.1',\n", |
||
| 5291 | " 'name': 'NZ_CP016923.1'},\n", |
||
| 5292 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002310335.1_ASM231033v1_genomic.fna',\n", |
||
| 5293 | " 'description': 'NZ_CP023310.1 Vibrio anguillarum strain VIB12 chromosome 1, complete sequence',\n", |
||
| 5294 | " 'id': 'NZ_CP023310.1',\n", |
||
| 5295 | " 'name': 'NZ_CP023310.1'},\n", |
||
| 5296 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002310335.1_ASM231033v1_genomic.fna',\n", |
||
| 5297 | " 'description': 'NZ_CP023311.1 Vibrio anguillarum strain VIB12 chromosome 2, complete sequence',\n", |
||
| 5298 | " 'id': 'NZ_CP023311.1',\n", |
||
| 5299 | " 'name': 'NZ_CP023311.1'},\n", |
||
| 5300 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000241895.1_ASM24189v1_genomic.fna',\n", |
||
| 5301 | " 'description': 'NC_016782.1 Corynebacterium diphtheriae 241, complete genome',\n", |
||
| 5302 | " 'id': 'NC_016782.1',\n", |
||
| 5303 | " 'name': 'NC_016782.1'},\n", |
||
| 5304 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003177055.1_ASM317705v1_genomic.fna',\n", |
||
| 5305 | " 'description': 'NZ_CP029451.1 Sinorhizobium fredii CCBAU 25509 chromosome, complete genome',\n", |
||
| 5306 | " 'id': 'NZ_CP029451.1',\n", |
||
| 5307 | " 'name': 'NZ_CP029451.1'},\n", |
||
| 5308 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004104505.1_ASM410450v1_genomic.fna',\n", |
||
| 5309 | " 'description': 'NZ_CP028834.1 Streptomyces sp. M2 chromosome, complete genome',\n", |
||
| 5310 | " 'id': 'NZ_CP028834.1',\n", |
||
| 5311 | " 'name': 'NZ_CP028834.1'},\n", |
||
| 5312 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001693275.1_ASM169327v1_genomic.fna',\n", |
||
| 5313 | " 'description': 'NZ_CP016477.1 Synechococcus sp. PCC 7117 chromosome, complete genome',\n", |
||
| 5314 | " 'id': 'NZ_CP016477.1',\n", |
||
| 5315 | " 'name': 'NZ_CP016477.1'},\n", |
||
| 5316 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004214795.1_ASM421479v1_genomic.fna',\n", |
||
| 5317 | " 'description': 'NZ_CP035928.1 Arcobacter pacificus strain LMG 26638 chromosome, complete genome',\n", |
||
| 5318 | " 'id': 'NZ_CP035928.1',\n", |
||
| 5319 | " 'name': 'NZ_CP035928.1'},\n", |
||
| 5320 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000018245.1_ASM1824v1_genomic.fna',\n", |
||
| 5321 | " 'description': 'NC_009883.1 Rickettsia bellii OSU 85-389, complete genome',\n", |
||
| 5322 | " 'id': 'NC_009883.1',\n", |
||
| 5323 | " 'name': 'NC_009883.1'},\n", |
||
| 5324 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000092605.1_ASM9260v1_genomic.fna',\n", |
||
| 5325 | " 'description': 'NC_014153.1 Thiomonas intermedia K12, complete genome',\n", |
||
| 5326 | " 'id': 'NC_014153.1',\n", |
||
| 5327 | " 'name': 'NC_014153.1'},\n", |
||
| 5328 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004328685.1_ASM432868v1_genomic.fna',\n", |
||
| 5329 | " 'description': 'NZ_CP035312.1 Escherichia coli strain D72 chromosome, complete genome',\n", |
||
| 5330 | " 'id': 'NZ_CP035312.1',\n", |
||
| 5331 | " 'name': 'NZ_CP035312.1'},\n", |
||
| 5332 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900475745.1_45532_D01_genomic.fna',\n", |
||
| 5333 | " 'description': 'NZ_LS483412.1 Legionella pneumophila subsp. pascullei strain NCTC12272 genome assembly, chromosome: 1',\n", |
||
| 5334 | " 'id': 'NZ_LS483412.1',\n", |
||
| 5335 | " 'name': 'NZ_LS483412.1'},\n", |
||
| 5336 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900638485.1_57728_B01_genomic.fna',\n", |
||
| 5337 | " 'description': 'NZ_LR134518.1 Helicobacter cholecystus strain NCTC13205 genome assembly, chromosome: 1',\n", |
||
| 5338 | " 'id': 'NZ_LR134518.1',\n", |
||
| 5339 | " 'name': 'NZ_LR134518.1'},\n", |
||
| 5340 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003254065.1_ASM325406v1_genomic.fna',\n", |
||
| 5341 | " 'description': 'NZ_CP029973.1 Escherichia coli strain 51008369SK1 chromosome, complete genome',\n", |
||
| 5342 | " 'id': 'NZ_CP029973.1',\n", |
||
| 5343 | " 'name': 'NZ_CP029973.1'},\n", |
||
| 5344 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002278095.1_ASM227809v1_genomic.fna',\n", |
||
| 5345 | " 'description': 'NZ_CP022988.1 Lactobacillus delbrueckii subsp. lactis DSM 20072 chromosome, complete genome',\n", |
||
| 5346 | " 'id': 'NZ_CP022988.1',\n", |
||
| 5347 | " 'name': 'NZ_CP022988.1'},\n", |
||
| 5348 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003595235.1_ASM359523v1_genomic.fna',\n", |
||
| 5349 | " 'description': 'NZ_CP032427.1 Streptomyces griseorubiginosus strain 3E-1 chromosome, complete genome',\n", |
||
| 5350 | " 'id': 'NZ_CP032427.1',\n", |
||
| 5351 | " 'name': 'NZ_CP032427.1'},\n", |
||
| 5352 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001983955.1_ASM198395v1_genomic.fna',\n", |
||
| 5353 | " 'description': 'NZ_CP019562.1 Streptococcus oralis strain S.MIT/ORALIS-351, complete genome',\n", |
||
| 5354 | " 'id': 'NZ_CP019562.1',\n", |
||
| 5355 | " 'name': 'NZ_CP019562.1'},\n", |
||
| 5356 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000493495.1_TS_genomic.fna',\n", |
||
| 5357 | " 'description': 'NC_022529.1 Campylobacter jejuni 4031 genome sequence',\n", |
||
| 5358 | " 'id': 'NC_022529.1',\n", |
||
| 5359 | " 'name': 'NC_022529.1'},\n", |
||
| 5360 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001729265.1_ASM172926v1_genomic.fna',\n", |
||
| 5361 | " 'description': 'NZ_CP016044.1 Edwardsiella piscicida strain S11-285 chromosome, complete genome',\n", |
||
| 5362 | " 'id': 'NZ_CP016044.1',\n", |
||
| 5363 | " 'name': 'NZ_CP016044.1'},\n", |
||
| 5364 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003063555.1_ASM306355v1_genomic.fna',\n", |
||
| 5365 | " 'description': 'NZ_CP028968.1 Aminobacter sp. MSH1 chromosome, complete genome',\n", |
||
| 5366 | " 'id': 'NZ_CP028968.1',\n", |
||
| 5367 | " 'name': 'NZ_CP028968.1'},\n", |
||
| 5368 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001867085.1_ASM186708v1_genomic.fna',\n", |
||
| 5369 | " 'description': 'NZ_CP015187.1 Corynebacterium pseudotuberculosis strain 38, complete genome',\n", |
||
| 5370 | " 'id': 'NZ_CP015187.1',\n", |
||
| 5371 | " 'name': 'NZ_CP015187.1'},\n", |
||
| 5372 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000832505.1_ASM83250v1_genomic.fna',\n", |
||
| 5373 | " 'description': 'NZ_CP009341.1 Bacillus anthracis strain Ohio ACB, complete genome',\n", |
||
| 5374 | " 'id': 'NZ_CP009341.1',\n", |
||
| 5375 | " 'name': 'NZ_CP009341.1'},\n", |
||
| 5376 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001999985.1_ASM199998v1_genomic.fna',\n", |
||
| 5377 | " 'description': 'NZ_CP019645.1 Helicobacter bilis strain AAQJH, complete genome',\n", |
||
| 5378 | " 'id': 'NZ_CP019645.1',\n", |
||
| 5379 | " 'name': 'NZ_CP019645.1'},\n", |
||
| 5380 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000521685.1_ASM52168v1_genomic.fna',\n", |
||
| 5381 | " 'description': 'NZ_CP006953.1 Mannheimia varigena USDA-ARS-USMARC-1388, complete genome',\n", |
||
| 5382 | " 'id': 'NZ_CP006953.1',\n", |
||
| 5383 | " 'name': 'NZ_CP006953.1'},\n", |
||
| 5384 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000252995.1_ASM25299v1_genomic.fna',\n", |
||
| 5385 | " 'description': 'NC_015761.1 Salmonella bongori NCTC 12419, culture collection SGSC SARC11, complete genome',\n", |
||
| 5386 | " 'id': 'NC_015761.1',\n", |
||
| 5387 | " 'name': 'NC_015761.1'},\n", |
||
| 5388 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004551665.1_ASM455166v1_genomic.fna',\n", |
||
| 5389 | " 'description': 'NZ_CP033936.1 Kerstersia gyiorum strain SWMUKG01 chromosome, complete genome',\n", |
||
| 5390 | " 'id': 'NZ_CP033936.1',\n", |
||
| 5391 | " 'name': 'NZ_CP033936.1'},\n", |
||
| 5392 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002833485.1_ASM283348v1_genomic.fna',\n", |
||
| 5393 | " 'description': 'NZ_CP025122.1 Bacillus sp. HBCD-sjtu chromosome, complete genome',\n", |
||
| 5394 | " 'id': 'NZ_CP025122.1',\n", |
||
| 5395 | " 'name': 'NZ_CP025122.1'},\n", |
||
| 5396 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003515405.1_ASM351540v1_genomic.fna',\n", |
||
| 5397 | " 'description': 'NZ_CP022792.1 Ralstonia solanacearum strain SL2729 chromosome, complete genome',\n", |
||
| 5398 | " 'id': 'NZ_CP022792.1',\n", |
||
| 5399 | " 'name': 'NZ_CP022792.1'},\n", |
||
| 5400 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001697225.1_ASM169722v1_genomic.fna',\n", |
||
| 5401 | " 'description': 'NZ_CP014671.1 Immundisolibacter cernigliae strain TR3.2, complete genome',\n", |
||
| 5402 | " 'id': 'NZ_CP014671.1',\n", |
||
| 5403 | " 'name': 'NZ_CP014671.1'},\n", |
||
| 5404 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900636365.1_41559_G01_genomic.fna',\n", |
||
| 5405 | " 'description': 'NZ_LR134266.1 Streptococcus viridans strain NCTC3166 genome assembly, chromosome: 1',\n", |
||
| 5406 | " 'id': 'NZ_LR134266.1',\n", |
||
| 5407 | " 'name': 'NZ_LR134266.1'},\n", |
||
| 5408 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001922245.1_ASM192224v1_genomic.fna',\n", |
||
| 5409 | " 'description': 'NZ_CP016300.1 Acinetobacter baumannii strain CMC-CR-MDR-Ab66 chromosome, complete genome',\n", |
||
| 5410 | " 'id': 'NZ_CP016300.1',\n", |
||
| 5411 | " 'name': 'NZ_CP016300.1'},\n", |
||
| 5412 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001704275.1_ASM170427v1_genomic.fna',\n", |
||
| 5413 | " 'description': 'NZ_CP011533.1 Streptomyces noursei ATCC 11455, complete genome',\n", |
||
| 5414 | " 'id': 'NZ_CP011533.1',\n", |
||
| 5415 | " 'name': 'NZ_CP011533.1'},\n", |
||
| 5416 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002838605.1_ASM283860v1_genomic.fna',\n", |
||
| 5417 | " 'description': 'NZ_CP023193.1 Bifidobacterium breve strain NRBB18 chromosome, complete genome',\n", |
||
| 5418 | " 'id': 'NZ_CP023193.1',\n", |
||
| 5419 | " 'name': 'NZ_CP023193.1'},\n", |
||
| 5420 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003288195.1_ASM328819v1_genomic.fna',\n", |
||
| 5421 | " 'description': 'NZ_CP025136.1 Lactobacillus sakei strain WiKim0072 chromosome, complete genome',\n", |
||
| 5422 | " 'id': 'NZ_CP025136.1',\n", |
||
| 5423 | " 'name': 'NZ_CP025136.1'},\n", |
||
| 5424 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003717135.1_ASM371713v1_genomic.fna',\n", |
||
| 5425 | " 'description': 'NZ_CP029936.1 Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 chromosome, complete genome',\n", |
||
| 5426 | " 'id': 'NZ_CP029936.1',\n", |
||
| 5427 | " 'name': 'NZ_CP029936.1'},\n", |
||
| 5428 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000445405.1_ASM44540v1_genomic.fna',\n", |
||
| 5429 | " 'description': 'NC_022082.1 Klebsiella pneumoniae JM45, complete genome',\n", |
||
| 5430 | " 'id': 'NC_022082.1',\n", |
||
| 5431 | " 'name': 'NC_022082.1'},\n", |
||
| 5432 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002023665.2_ASM202366v2_genomic.fna',\n", |
||
| 5433 | " 'description': 'NZ_CP023401.1 Elizabethkingia anophelis R26 chromosome, complete genome',\n", |
||
| 5434 | " 'id': 'NZ_CP023401.1',\n", |
||
| 5435 | " 'name': 'NZ_CP023401.1'},\n", |
||
| 5436 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000967155.2_HUSEC2011CHR1_genomic.fna',\n", |
||
| 5437 | " 'description': 'NZ_HF572917.1 Escherichia coli HUSEC2011 complete genome',\n", |
||
| 5438 | " 'id': 'NZ_HF572917.1',\n", |
||
| 5439 | " 'name': 'NZ_HF572917.1'},\n", |
||
| 5440 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000262205.1_ASM26220v1_genomic.fna',\n", |
||
| 5441 | " 'description': 'NC_017909.1 Francisella noatunensis subsp. orientalis str. Toba 04, complete genome',\n", |
||
| 5442 | " 'id': 'NC_017909.1',\n", |
||
| 5443 | " 'name': 'NC_017909.1'},\n", |
||
| 5444 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001683295.1_ASM168329v1_genomic.fna',\n", |
||
| 5445 | " 'description': 'NZ_CP012728.1 Bacillus anthracis strain PR10-4, complete genome',\n", |
||
| 5446 | " 'id': 'NZ_CP012728.1',\n", |
||
| 5447 | " 'name': 'NZ_CP012728.1'},\n", |
||
| 5448 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900489555.1_MMC68_genomic.fna',\n", |
||
| 5449 | " 'description': 'NZ_LS483503.1 Mycoplasma mycoides subsp. capri strain GM12 genome assembly, chromosome: omosome',\n", |
||
| 5450 | " 'id': 'NZ_LS483503.1',\n", |
||
| 5451 | " 'name': 'NZ_LS483503.1'},\n", |
||
| 5452 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000023185.1_ASM2318v1_genomic.fna',\n", |
||
| 5453 | " 'description': 'NC_012850.1 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome',\n", |
||
| 5454 | " 'id': 'NC_012850.1',\n", |
||
| 5455 | " 'name': 'NC_012850.1'},\n", |
||
| 5456 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004193895.1_ASM419389v1_genomic.fna',\n", |
||
| 5457 | " 'description': 'NZ_CP020959.1 Staphylococcus aureus strain H489 chromosome, complete genome',\n", |
||
| 5458 | " 'id': 'NZ_CP020959.1',\n", |
||
| 5459 | " 'name': 'NZ_CP020959.1'},\n", |
||
| 5460 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003345255.1_ASM334525v1_genomic.fna',\n", |
||
| 5461 | " 'description': 'NZ_CP029331.1 Bacterium GD-2, complete genome',\n", |
||
| 5462 | " 'id': 'NZ_CP029331.1',\n", |
||
| 5463 | " 'name': 'NZ_CP029331.1'},\n", |
||
| 5464 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001018725.2_ASM101872v2_genomic.fna',\n", |
||
| 5465 | " 'description': 'NZ_CP026961.1 Staphylococcus aureus strain FDAARGOS_10 chromosome, complete genome',\n", |
||
| 5466 | " 'id': 'NZ_CP026961.1',\n", |
||
| 5467 | " 'name': 'NZ_CP026961.1'},\n", |
||
| 5468 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900489575.1_MMC-glpU_genomic.fna',\n", |
||
| 5469 | " 'description': 'NZ_LS483501.1 Mycoplasma mycoides subsp. capri strain GM12 genome assembly, chromosome: omosome',\n", |
||
| 5470 | " 'id': 'NZ_LS483501.1',\n", |
||
| 5471 | " 'name': 'NZ_LS483501.1'},\n", |
||
| 5472 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001043135.1_ASM104313v1_genomic.fna',\n", |
||
| 5473 | " 'description': 'NZ_CP011348.1 Mycoplasma bovis strain NM2012, complete genome',\n", |
||
| 5474 | " 'id': 'NZ_CP011348.1',\n", |
||
| 5475 | " 'name': 'NZ_CP011348.1'},\n", |
||
| 5476 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001987815.1_ASM198781v1_genomic.fna',\n", |
||
| 5477 | " 'description': 'NZ_CP011758.1 Bordetella pertussis strain J039, complete genome',\n", |
||
| 5478 | " 'id': 'NZ_CP011758.1',\n", |
||
| 5479 | " 'name': 'NZ_CP011758.1'},\n", |
||
| 5480 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000988465.1_ASM98846v1_genomic.fna',\n", |
||
| 5481 | " 'description': 'NZ_CP011324.1 Escherichia coli strain SQ2203, complete genome',\n", |
||
| 5482 | " 'id': 'NZ_CP011324.1',\n", |
||
| 5483 | " 'name': 'NZ_CP011324.1'},\n", |
||
| 5484 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003351945.1_ASM335194v1_genomic.fna',\n", |
||
| 5485 | " 'description': 'NZ_CP022615.1 Gemella sp. ND 6198 chromosome, complete genome',\n", |
||
| 5486 | " 'id': 'NZ_CP022615.1',\n", |
||
| 5487 | " 'name': 'NZ_CP022615.1'},\n", |
||
| 5488 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000026285.1_ASM2628v2_genomic.fna',\n", |
||
| 5489 | " 'description': 'NC_011742.1 Escherichia coli S88 chromosome, complete genome',\n", |
||
| 5490 | " 'id': 'NC_011742.1',\n", |
||
| 5491 | " 'name': 'NC_011742.1'},\n", |
||
| 5492 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000699025.1_ASM69902v1_genomic.fna',\n", |
||
| 5493 | " 'description': 'NZ_CP007695.1 Brucella suis bv. 2 strain Bs143CITA chromosome I, complete sequence',\n", |
||
| 5494 | " 'id': 'NZ_CP007695.1',\n", |
||
| 5495 | " 'name': 'NZ_CP007695.1'},\n", |
||
| 5496 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000699025.1_ASM69902v1_genomic.fna',\n", |
||
| 5497 | " 'description': 'NZ_CP007696.1 Brucella suis bv. 2 strain Bs143CITA chromosome II, complete sequence',\n", |
||
| 5498 | " 'id': 'NZ_CP007696.1',\n", |
||
| 5499 | " 'name': 'NZ_CP007696.1'},\n", |
||
| 5500 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000143145.1_ASM14314v1_genomic.fna',\n", |
||
| 5501 | " 'description': 'NC_014313.1 Hyphomicrobium denitrificans ATCC 51888, complete genome',\n", |
||
| 5502 | " 'id': 'NC_014313.1',\n", |
||
| 5503 | " 'name': 'NC_014313.1'},\n", |
||
| 5504 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000012885.1_ASM1288v1_genomic.fna',\n", |
||
| 5505 | " 'description': 'NC_007498.2 Pelobacter carbinolicus DSM 2380, complete genome',\n", |
||
| 5506 | " 'id': 'NC_007498.2',\n", |
||
| 5507 | " 'name': 'NC_007498.2'},\n", |
||
| 5508 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000967325.1_ASM96732v1_genomic.fna',\n", |
||
| 5509 | " 'description': 'NC_020529.1 Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 10388',\n", |
||
| 5510 | " 'id': 'NC_020529.1',\n", |
||
| 5511 | " 'name': 'NC_020529.1'},\n", |
||
| 5512 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003402955.1_ASM340295v1_genomic.fna',\n", |
||
| 5513 | " 'description': 'NZ_CP031546.1 Escherichia coli strain cq9 chromosome, complete genome',\n", |
||
| 5514 | " 'id': 'NZ_CP031546.1',\n", |
||
| 5515 | " 'name': 'NZ_CP031546.1'},\n", |
||
| 5516 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000195995.1_ASM19599v1_genomic.fna',\n", |
||
| 5517 | " 'description': 'NC_003198.1 Salmonella enterica subsp. enterica serovar Typhi str. CT18, complete genome',\n", |
||
| 5518 | " 'id': 'NC_003198.1',\n", |
||
| 5519 | " 'name': 'NC_003198.1'},\n", |
||
| 5520 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900095805.1_PA14Or_genomic.fna',\n", |
||
| 5521 | " 'description': 'NZ_LT608330.1 Pseudomonas aeruginosa isolate PA14Or_reads genome assembly, chromosome: PA14OR',\n", |
||
| 5522 | " 'id': 'NZ_LT608330.1',\n", |
||
| 5523 | " 'name': 'NZ_LT608330.1'},\n", |
||
| 5524 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001277995.1_ASM127799v1_genomic.fna',\n", |
||
| 5525 | " 'description': 'NZ_CP009220.1 Corynebacterium deserti GIMN1.010, complete genome',\n", |
||
| 5526 | " 'id': 'NZ_CP009220.1',\n", |
||
| 5527 | " 'name': 'NZ_CP009220.1'},\n", |
||
| 5528 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003966505.1_ASM396650v1_genomic.fna',\n", |
||
| 5529 | " 'description': 'NZ_AP018937.1 Streptococcus pneumoniae HU-OH DNA, complete genome',\n", |
||
| 5530 | " 'id': 'NZ_AP018937.1',\n", |
||
| 5531 | " 'name': 'NZ_AP018937.1'},\n", |
||
| 5532 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000626675.1_ASM62667v1_genomic.fna',\n", |
||
| 5533 | " 'description': 'NZ_CP006842.1 Corynebacterium glyciniphilum AJ 3170, complete genome',\n", |
||
| 5534 | " 'id': 'NZ_CP006842.1',\n", |
||
| 5535 | " 'name': 'NZ_CP006842.1'},\n", |
||
| 5536 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002549795.1_ASM254979v1_genomic.fna',\n", |
||
| 5537 | " 'description': 'NZ_CP021435.1 Halomonas beimenensis strain NTU-111 chromosome, complete genome',\n", |
||
| 5538 | " 'id': 'NZ_CP021435.1',\n", |
||
| 5539 | " 'name': 'NZ_CP021435.1'},\n", |
||
| 5540 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001017435.1_ASM101743v1_genomic.fna',\n", |
||
| 5541 | " 'description': 'NZ_CP011371.1 [Polyangium] brachysporum strain DSM 7029, complete genome',\n", |
||
| 5542 | " 'id': 'NZ_CP011371.1',\n", |
||
| 5543 | " 'name': 'NZ_CP011371.1'},\n", |
||
| 5544 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000210435.1_ASM21043v1_genomic.fna',\n", |
||
| 5545 | " 'description': 'NC_017174.1 Clostridium difficile complete genome, strain M120',\n", |
||
| 5546 | " 'id': 'NC_017174.1',\n", |
||
| 5547 | " 'name': 'NC_017174.1'},\n", |
||
| 5548 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003342735.1_ASM334273v1_genomic.fna',\n", |
||
| 5549 | " 'description': 'NZ_CP031131.1 Staphylococcus aureus strain E16SA093 chromosome, complete genome',\n", |
||
| 5550 | " 'id': 'NZ_CP031131.1',\n", |
||
| 5551 | " 'name': 'NZ_CP031131.1'},\n", |
||
| 5552 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000283295.1_ASM28329v1_genomic.fna',\n", |
||
| 5553 | " 'description': 'NC_018289.1 Mycobacterium smegmatis str. MC2 155, complete genome',\n", |
||
| 5554 | " 'id': 'NC_018289.1',\n", |
||
| 5555 | " 'name': 'NC_018289.1'},\n", |
||
| 5556 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002288075.1_ASM228807v1_genomic.fna',\n", |
||
| 5557 | " 'description': 'NZ_CP021118.1 Streptomyces sp. CLI2509, complete genome',\n", |
||
| 5558 | " 'id': 'NZ_CP021118.1',\n", |
||
| 5559 | " 'name': 'NZ_CP021118.1'},\n", |
||
| 5560 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000632475.1_ASM63247v2_genomic.fna',\n", |
||
| 5561 | " 'description': 'NZ_CP007793.1 Azospirillum brasilense strain Az39, complete genome',\n", |
||
| 5562 | " 'id': 'NZ_CP007793.1',\n", |
||
| 5563 | " 'name': 'NZ_CP007793.1'},\n", |
||
| 5564 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002804225.1_ASM280422v1_genomic.fna',\n", |
||
| 5565 | " 'description': 'NZ_CP024967.1 Mesoplasma lactucae ATCC 49193 strain 831-C4 chromosome, complete genome',\n", |
||
| 5566 | " 'id': 'NZ_CP024967.1',\n", |
||
| 5567 | " 'name': 'NZ_CP024967.1'},\n", |
||
| 5568 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000507225.1_ASM50722v1_genomic.fna',\n", |
||
| 5569 | " 'description': 'NC_023060.1 Chlamydia trachomatis C/TW-3, complete genome',\n", |
||
| 5570 | " 'id': 'NC_023060.1',\n", |
||
| 5571 | " 'name': 'NC_023060.1'},\n", |
||
| 5572 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002354895.1_ASM235489v1_genomic.fna',\n", |
||
| 5573 | " 'description': 'NZ_CP023439.1 Thauera sp. K11 chromosome, complete genome',\n", |
||
| 5574 | " 'id': 'NZ_CP023439.1',\n", |
||
| 5575 | " 'name': 'NZ_CP023439.1'},\n", |
||
| 5576 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001593395.2_ASM159339v2_genomic.fna',\n", |
||
| 5577 | " 'description': 'NZ_CP015443.1 Bacillus velezensis strain CC09, complete genome',\n", |
||
| 5578 | " 'id': 'NZ_CP015443.1',\n", |
||
| 5579 | " 'name': 'NZ_CP015443.1'},\n", |
||
| 5580 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900324425.1_48853_H01_genomic.fna',\n", |
||
| 5581 | " 'description': 'NZ_LT992488.1 Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 1',\n", |
||
| 5582 | " 'id': 'NZ_LT992488.1',\n", |
||
| 5583 | " 'name': 'NZ_LT992488.1'},\n", |
||
| 5584 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900324425.1_48853_H01_genomic.fna',\n", |
||
| 5585 | " 'description': 'NZ_LT992489.1 Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 2',\n", |
||
| 5586 | " 'id': 'NZ_LT992489.1',\n", |
||
| 5587 | " 'name': 'NZ_LT992489.1'},\n", |
||
| 5588 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900638665.1_58798_E01_genomic.fna',\n", |
||
| 5589 | " 'description': 'NZ_LR134532.1 Pasteurella multocida strain NCTC10323 genome assembly, chromosome: 1',\n", |
||
| 5590 | " 'id': 'NZ_LR134532.1',\n", |
||
| 5591 | " 'name': 'NZ_LR134532.1'},\n", |
||
| 5592 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003627355.1_ASM362735v1_genomic.fna',\n", |
||
| 5593 | " 'description': 'NZ_CP032648.1 Lactobacillus plantarum strain ZFM4 chromosome, complete genome',\n", |
||
| 5594 | " 'id': 'NZ_CP032648.1',\n", |
||
| 5595 | " 'name': 'NZ_CP032648.1'},\n", |
||
| 5596 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003722195.1_ASM372219v1_genomic.fna',\n", |
||
| 5597 | " 'description': 'NZ_CP033605.1 Escherichia coli O157:H7 strain TR01 chromosome, complete genome',\n", |
||
| 5598 | " 'id': 'NZ_CP033605.1',\n", |
||
| 5599 | " 'name': 'NZ_CP033605.1'},\n", |
||
| 5600 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003718235.1_ASM371823v1_genomic.fna',\n", |
||
| 5601 | " 'description': 'NZ_CP029918.1 Salmonella enterica subsp. enterica serovar Typhi strain 311189_232103 chromosome, complete genome',\n", |
||
| 5602 | " 'id': 'NZ_CP029918.1',\n", |
||
| 5603 | " 'name': 'NZ_CP029918.1'},\n", |
||
| 5604 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001885275.1_ASM188527v1_genomic.fna',\n", |
||
| 5605 | " 'description': 'NZ_CP018051.1 Francisella noatunensis subsp. orientalis strain F1, complete genome',\n", |
||
| 5606 | " 'id': 'NZ_CP018051.1',\n", |
||
| 5607 | " 'name': 'NZ_CP018051.1'},\n", |
||
| 5608 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001887635.1_ASM188763v1_genomic.fna',\n", |
||
| 5609 | " 'description': 'NZ_CP013315.1 Vibrio cholerae strain M2140 chromosome 1, complete sequence',\n", |
||
| 5610 | " 'id': 'NZ_CP013315.1',\n", |
||
| 5611 | " 'name': 'NZ_CP013315.1'},\n", |
||
| 5612 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001887635.1_ASM188763v1_genomic.fna',\n", |
||
| 5613 | " 'description': 'NZ_CP013316.1 Vibrio cholerae strain M2140 chromosome 2, complete sequence',\n", |
||
| 5614 | " 'id': 'NZ_CP013316.1',\n", |
||
| 5615 | " 'name': 'NZ_CP013316.1'},\n", |
||
| 5616 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635425.1_28869_C01_genomic.fna',\n", |
||
| 5617 | " 'description': 'NZ_LR134118.1 Citrobacter freundii strain NCTC9750 genome assembly, chromosome: 1',\n", |
||
| 5618 | " 'id': 'NZ_LR134118.1',\n", |
||
| 5619 | " 'name': 'NZ_LR134118.1'},\n", |
||
| 5620 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003589905.1_ASM358990v1_genomic.fna',\n", |
||
| 5621 | " 'description': 'NZ_CP032401.1 Streptococcus iniae strain GX005 chromosome, complete genome',\n", |
||
| 5622 | " 'id': 'NZ_CP032401.1',\n", |
||
| 5623 | " 'name': 'NZ_CP032401.1'},\n", |
||
| 5624 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000418475.1_ASM41847v1_genomic.fna',\n", |
||
| 5625 | " 'description': 'NC_021723.1 Lactobacillus rhamnosus LOCK900, complete genome',\n", |
||
| 5626 | " 'id': 'NC_021723.1',\n", |
||
| 5627 | " 'name': 'NC_021723.1'},\n", |
||
| 5628 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003429325.1_ASM342932v1_genomic.fna',\n", |
||
| 5629 | " 'description': 'NZ_CP031761.1 Pseudoalteromonas piscicida strain DE2-A chromosome 1, complete sequence',\n", |
||
| 5630 | " 'id': 'NZ_CP031761.1',\n", |
||
| 5631 | " 'name': 'NZ_CP031761.1'},\n", |
||
| 5632 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003429325.1_ASM342932v1_genomic.fna',\n", |
||
| 5633 | " 'description': 'NZ_CP031762.1 Pseudoalteromonas piscicida strain DE2-A chromosome 2, complete sequence',\n", |
||
| 5634 | " 'id': 'NZ_CP031762.1',\n", |
||
| 5635 | " 'name': 'NZ_CP031762.1'},\n", |
||
| 5636 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003285105.1_ASM328510v1_genomic.fna',\n", |
||
| 5637 | " 'description': 'NZ_CP030158.1 Rhodothermaceae bacterium strain MEBiC09517 chromosome, complete genome',\n", |
||
| 5638 | " 'id': 'NZ_CP030158.1',\n", |
||
| 5639 | " 'name': 'NZ_CP030158.1'},\n", |
||
| 5640 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002381305.1_ASM238130v1_genomic.fna',\n", |
||
| 5641 | " 'description': 'NZ_CP010588.1 Phaeobacter gallaeciensis strain P11 chromosome, complete genome',\n", |
||
| 5642 | " 'id': 'NZ_CP010588.1',\n", |
||
| 5643 | " 'name': 'NZ_CP010588.1'},\n", |
||
| 5644 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000168875.3_ASM16887v3_genomic.fna',\n", |
||
| 5645 | " 'description': \"NZ_CP018150.1 Coxiella burnetii 'MSU Goat Q177' chromosome, complete genome\",\n", |
||
| 5646 | " 'id': 'NZ_CP018150.1',\n", |
||
| 5647 | " 'name': 'NZ_CP018150.1'},\n", |
||
| 5648 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000020105.1_ASM2010v1_genomic.fna',\n", |
||
| 5649 | " 'description': 'NC_011035.1 Neisseria gonorrhoeae NCCP11945, complete genome',\n", |
||
| 5650 | " 'id': 'NC_011035.1',\n", |
||
| 5651 | " 'name': 'NC_011035.1'},\n", |
||
| 5652 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000320385.2_ASM32038v2_genomic.fna',\n", |
||
| 5653 | " 'description': 'NC_019845.2 Sinorhizobium meliloti GR4, complete genome',\n", |
||
| 5654 | " 'id': 'NC_019845.2',\n", |
||
| 5655 | " 'name': 'NC_019845.2'},\n", |
||
| 5656 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002216795.1_ASM221679v1_genomic.fna',\n", |
||
| 5657 | " 'description': 'NZ_CP022316.1 Brachybacterium sp. VR2415 chromosome, complete genome',\n", |
||
| 5658 | " 'id': 'NZ_CP022316.1',\n", |
||
| 5659 | " 'name': 'NZ_CP022316.1'},\n", |
||
| 5660 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002949975.1_ASM294997v1_genomic.fna',\n", |
||
| 5661 | " 'description': 'NZ_CP026880.1 Pseudomonas sp. LH1G9 chromosome, complete genome',\n", |
||
| 5662 | " 'id': 'NZ_CP026880.1',\n", |
||
| 5663 | " 'name': 'NZ_CP026880.1'},\n", |
||
| 5664 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002109405.1_ASM210940v1_genomic.fna',\n", |
||
| 5665 | " 'description': 'NZ_CP020861.1 Lactobacillus plantarum strain JBE490 chromosome, complete genome',\n", |
||
| 5666 | " 'id': 'NZ_CP020861.1',\n", |
||
| 5667 | " 'name': 'NZ_CP020861.1'},\n", |
||
| 5668 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004008415.1_ASM400841v1_genomic.fna',\n", |
||
| 5669 | " 'description': 'NZ_CP025073.1 Bordetella pertussis strain J384 chromosome, complete genome',\n", |
||
| 5670 | " 'id': 'NZ_CP025073.1',\n", |
||
| 5671 | " 'name': 'NZ_CP025073.1'},\n", |
||
| 5672 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001360555.2_2010_7898_genomic.fna',\n", |
||
| 5673 | " 'description': 'NZ_LT905139.1 Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 genome assembly, chromosome: 1',\n", |
||
| 5674 | " 'id': 'NZ_LT905139.1',\n", |
||
| 5675 | " 'name': 'NZ_LT905139.1'},\n", |
||
| 5676 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000008285.1_ASM828v1_genomic.fna',\n", |
||
| 5677 | " 'description': 'NC_002973.6 Listeria monocytogenes str. 4b F2365, complete genome',\n", |
||
| 5678 | " 'id': 'NC_002973.6',\n", |
||
| 5679 | " 'name': 'NC_002973.6'},\n", |
||
| 5680 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000023665.1_ASM2366v1_genomic.fna',\n", |
||
| 5681 | " 'description': \"NC_012947.1 Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete genome\",\n", |
||
| 5682 | " 'id': 'NC_012947.1',\n", |
||
| 5683 | " 'name': 'NC_012947.1'},\n", |
||
| 5684 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900079785.1_CITRO86_PRJEB13532_v1_genomic.fna',\n", |
||
| 5685 | " 'description': 'NZ_LT556084.1 Citrobacter sp. 86 genome assembly, chromosome: CITRO86',\n", |
||
| 5686 | " 'id': 'NZ_LT556084.1',\n", |
||
| 5687 | " 'name': 'NZ_LT556084.1'},\n", |
||
| 5688 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001886695.1_ASM188669v1_genomic.fna',\n", |
||
| 5689 | " 'description': 'NZ_CP018097.1 Erythrobacter gangjinensis strain CGMCC1.15024 chromosome I, complete sequence',\n", |
||
| 5690 | " 'id': 'NZ_CP018097.1',\n", |
||
| 5691 | " 'name': 'NZ_CP018097.1'},\n", |
||
| 5692 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001886695.1_ASM188669v1_genomic.fna',\n", |
||
| 5693 | " 'description': 'NZ_CP018098.1 Erythrobacter gangjinensis strain CGMCC1.15024 chromosome II, complete sequence',\n", |
||
| 5694 | " 'id': 'NZ_CP018098.1',\n", |
||
| 5695 | " 'name': 'NZ_CP018098.1'},\n", |
||
| 5696 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002763745.1_ASM276374v1_genomic.fna',\n", |
||
| 5697 | " 'description': 'NZ_CP024723.1 Prevotella intermedia strain KCOM 2837 chromosome 1, complete sequence',\n", |
||
| 5698 | " 'id': 'NZ_CP024723.1',\n", |
||
| 5699 | " 'name': 'NZ_CP024723.1'},\n", |
||
| 5700 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002763745.1_ASM276374v1_genomic.fna',\n", |
||
| 5701 | " 'description': 'NZ_CP024724.1 Prevotella intermedia strain KCOM 2837 chromosome 2, complete sequence',\n", |
||
| 5702 | " 'id': 'NZ_CP024724.1',\n", |
||
| 5703 | " 'name': 'NZ_CP024724.1'},\n", |
||
| 5704 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900699785.1_B91_SC_genomic.fna',\n", |
||
| 5705 | " 'description': 'NZ_LR535679.1 Campylobacter showae isolate B91_SC genome assembly, chromosome: 1',\n", |
||
| 5706 | " 'id': 'NZ_LR535679.1',\n", |
||
| 5707 | " 'name': 'NZ_LR535679.1'},\n", |
||
| 5708 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001932935.1_ASM193293v1_genomic.fna',\n", |
||
| 5709 | " 'description': 'NZ_CP013811.1 Piscirickettsia salmonis strain AY3864B, complete genome',\n", |
||
| 5710 | " 'id': 'NZ_CP013811.1',\n", |
||
| 5711 | " 'name': 'NZ_CP013811.1'},\n", |
||
| 5712 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003071305.1_ASM307130v1_genomic.fna',\n", |
||
| 5713 | " 'description': 'NZ_CP028953.1 Klebsiella pneumoniae strain AR_0141 chromosome, complete genome',\n", |
||
| 5714 | " 'id': 'NZ_CP028953.1',\n", |
||
| 5715 | " 'name': 'NZ_CP028953.1'},\n", |
||
| 5716 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002119685.1_ASM211968v1_genomic.fna',\n", |
||
| 5717 | " 'description': 'NZ_CP021108.1 Bordetella genomosp. 8 strain AU19157 chromosome, complete genome',\n", |
||
| 5718 | " 'id': 'NZ_CP021108.1',\n", |
||
| 5719 | " 'name': 'NZ_CP021108.1'},\n", |
||
| 5720 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000316175.1_ASM31617v1_genomic.fna',\n", |
||
| 5721 | " 'description': 'NC_019670.1 Pseudomonas sp. UW4, complete genome',\n", |
||
| 5722 | " 'id': 'NC_019670.1',\n", |
||
| 5723 | " 'name': 'NC_019670.1'},\n", |
||
| 5724 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004353865.1_ASM435386v1_genomic.fna',\n", |
||
| 5725 | " 'description': 'NZ_CP037867.1 Hydrogenophaga pseudoflava strain DSM 1084 chromosome, complete genome',\n", |
||
| 5726 | " 'id': 'NZ_CP037867.1',\n", |
||
| 5727 | " 'name': 'NZ_CP037867.1'},\n", |
||
| 5728 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000550785.1_ASM55078v1_genomic.fna',\n", |
||
| 5729 | " 'description': 'NZ_CP004350.1 Corynebacterium casei LMG S-19264, complete genome',\n", |
||
| 5730 | " 'id': 'NZ_CP004350.1',\n", |
||
| 5731 | " 'name': 'NZ_CP004350.1'},\n", |
||
| 5732 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004141875.1_ASM414187v1_genomic.fna',\n", |
||
| 5733 | " 'description': 'NZ_CP035566.1 Lactobacillus plantarum strain SRCM103300 chromosome, complete genome',\n", |
||
| 5734 | " 'id': 'NZ_CP035566.1',\n", |
||
| 5735 | " 'name': 'NZ_CP035566.1'},\n", |
||
| 5736 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003205535.1_ASM320553v1_genomic.fna',\n", |
||
| 5737 | " 'description': 'NZ_CP029756.1 Brucella melitensis strain CIIMS-NV-1 chromosome I, complete sequence',\n", |
||
| 5738 | " 'id': 'NZ_CP029756.1',\n", |
||
| 5739 | " 'name': 'NZ_CP029756.1'},\n", |
||
| 5740 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003205535.1_ASM320553v1_genomic.fna',\n", |
||
| 5741 | " 'description': 'NZ_CP029757.1 Brucella melitensis strain CIIMS-NV-1 chromosome II, complete sequence',\n", |
||
| 5742 | " 'id': 'NZ_CP029757.1',\n", |
||
| 5743 | " 'name': 'NZ_CP029757.1'},\n", |
||
| 5744 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002952055.1_ASM295205v1_genomic.fna',\n", |
||
| 5745 | " 'description': 'NZ_CP021255.1 Desulfobulbus sp. ORNL chromosome, complete genome',\n", |
||
| 5746 | " 'id': 'NZ_CP021255.1',\n", |
||
| 5747 | " 'name': 'NZ_CP021255.1'},\n", |
||
| 5748 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002220775.1_ASM222077v1_genomic.fna',\n", |
||
| 5749 | " 'description': 'NZ_CP019685.1 Campylobacter sputorum strain RM8705, complete genome',\n", |
||
| 5750 | " 'id': 'NZ_CP019685.1',\n", |
||
| 5751 | " 'name': 'NZ_CP019685.1'},\n", |
||
| 5752 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000009265.1_ASM926v1_genomic.fna',\n", |
||
| 5753 | " 'description': 'NC_008380.1 Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841',\n", |
||
| 5754 | " 'id': 'NC_008380.1',\n", |
||
| 5755 | " 'name': 'NC_008380.1'},\n", |
||
| 5756 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003204115.1_ASM320411v1_genomic.fna',\n", |
||
| 5757 | " 'description': 'NZ_CP029725.1 Proteus mirabilis strain AR_0029 chromosome, complete genome',\n", |
||
| 5758 | " 'id': 'NZ_CP029725.1',\n", |
||
| 5759 | " 'name': 'NZ_CP029725.1'},\n", |
||
| 5760 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000331165.2_ASM33116v2_genomic.fna',\n", |
||
| 5761 | " 'description': 'NZ_CP027541.1 Mycolicibacterium smegmatis MKD8 chromosome, complete genome',\n", |
||
| 5762 | " 'id': 'NZ_CP027541.1',\n", |
||
| 5763 | " 'name': 'NZ_CP027541.1'},\n", |
||
| 5764 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002966815.1_ASM296681v1_genomic.fna',\n", |
||
| 5765 | " 'description': 'NZ_CP023271.1 Stenotrophomonas sp. MYb57 chromosome, complete genome',\n", |
||
| 5766 | " 'id': 'NZ_CP023271.1',\n", |
||
| 5767 | " 'name': 'NZ_CP023271.1'},\n", |
||
| 5768 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002209265.1_ASM220926v2_genomic.fna',\n", |
||
| 5769 | " 'description': 'NZ_CP022093.1 Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome',\n", |
||
| 5770 | " 'id': 'NZ_CP022093.1',\n", |
||
| 5771 | " 'name': 'NZ_CP022093.1'},\n", |
||
| 5772 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000441715.1_ASM44171v1_genomic.fna',\n", |
||
| 5773 | " 'description': 'NC_021890.1 Chlamydia trachomatis RC-F(s)/342, complete genome',\n", |
||
| 5774 | " 'id': 'NC_021890.1',\n", |
||
| 5775 | " 'name': 'NC_021890.1'},\n", |
||
| 5776 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001596075.2_ASM159607v2_genomic.fna',\n", |
||
| 5777 | " 'description': 'NZ_CP014696.2 Klebsiella quasipneumoniae strain ATCC 700603, complete genome',\n", |
||
| 5778 | " 'id': 'NZ_CP014696.2',\n", |
||
| 5779 | " 'name': 'NZ_CP014696.2'},\n", |
||
| 5780 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002302355.1_ASM230235v1_genomic.fna',\n", |
||
| 5781 | " 'description': 'NZ_CP019485.1 Sinorhizobium meliloti strain B401 chromosome, complete genome',\n", |
||
| 5782 | " 'id': 'NZ_CP019485.1',\n", |
||
| 5783 | " 'name': 'NZ_CP019485.1'},\n", |
||
| 5784 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000271325.1_ASM27132v1_genomic.fna',\n", |
||
| 5785 | " 'description': 'NC_018065.1 Solibacillus silvestris StLB046 DNA, complete genome',\n", |
||
| 5786 | " 'id': 'NC_018065.1',\n", |
||
| 5787 | " 'name': 'NC_018065.1'},\n", |
||
| 5788 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001753525.1_ASM175352v1_genomic.fna',\n", |
||
| 5789 | " 'description': 'NZ_CP017446.1 Escherichia coli O157:H7 strain 9234 chromosome, complete genome',\n", |
||
| 5790 | " 'id': 'NZ_CP017446.1',\n", |
||
| 5791 | " 'name': 'NZ_CP017446.1'},\n", |
||
| 5792 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001580455.1_ASM158045v1_genomic.fna',\n", |
||
| 5793 | " 'description': 'NZ_CP010951.1 Ramlibacter tataouinensis strain 5-10, complete genome',\n", |
||
| 5794 | " 'id': 'NZ_CP010951.1',\n", |
||
| 5795 | " 'name': 'NZ_CP010951.1'},\n", |
||
| 5796 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000832145.1_ASM83214v1_genomic.fna',\n", |
||
| 5797 | " 'description': 'NZ_CP007633.1 Thermotoga sp. RQ7, complete genome',\n", |
||
| 5798 | " 'id': 'NZ_CP007633.1',\n", |
||
| 5799 | " 'name': 'NZ_CP007633.1'},\n", |
||
| 5800 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002868775.1_ASM286877v1_genomic.fna',\n", |
||
| 5801 | " 'description': 'NZ_CP025590.1 Lactobacillus plantarum strain K259 chromosome, complete genome',\n", |
||
| 5802 | " 'id': 'NZ_CP025590.1',\n", |
||
| 5803 | " 'name': 'NZ_CP025590.1'},\n", |
||
| 5804 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001703595.1_ASM170359v1_genomic.fna',\n", |
||
| 5805 | " 'description': 'NZ_CP016849.1 Pseudomonas sp. TMW 2.1634 chromosome, complete genome',\n", |
||
| 5806 | " 'id': 'NZ_CP016849.1',\n", |
||
| 5807 | " 'name': 'NZ_CP016849.1'},\n", |
||
| 5808 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003966915.1_ASM396691v1_genomic.fna',\n", |
||
| 5809 | " 'description': 'NZ_AP018150.1 Mycoavidus cysteinexigens DNA, complete genome, strain: B1-EB',\n", |
||
| 5810 | " 'id': 'NZ_AP018150.1',\n", |
||
| 5811 | " 'name': 'NZ_AP018150.1'},\n", |
||
| 5812 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002028345.1_ASM202834v1_genomic.fna',\n", |
||
| 5813 | " 'description': 'NZ_CP001973.1 Spiroplasma eriocheiris CCTCC M 207170, complete genome',\n", |
||
| 5814 | " 'id': 'NZ_CP001973.1',\n", |
||
| 5815 | " 'name': 'NZ_CP001973.1'},\n", |
||
| 5816 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001887615.1_ASM188761v1_genomic.fna',\n", |
||
| 5817 | " 'description': 'NZ_CP013319.1 Vibrio cholerae strain NCTC9420 chromosome 1, complete sequence',\n", |
||
| 5818 | " 'id': 'NZ_CP013319.1',\n", |
||
| 5819 | " 'name': 'NZ_CP013319.1'},\n", |
||
| 5820 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001887615.1_ASM188761v1_genomic.fna',\n", |
||
| 5821 | " 'description': 'NZ_CP013320.1 Vibrio cholerae strain NCTC9420 chromosome 2, complete sequence',\n", |
||
| 5822 | " 'id': 'NZ_CP013320.1',\n", |
||
| 5823 | " 'name': 'NZ_CP013320.1'},\n", |
||
| 5824 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5825 | " 'description': 'NZ_LR135243.1 Enterococcus faecium isolate E6988 genome assembly, chromosome: 1',\n", |
||
| 5826 | " 'id': 'NZ_LR135243.1',\n", |
||
| 5827 | " 'name': 'NZ_LR135243.1'},\n", |
||
| 5828 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5829 | " 'description': 'NZ_LR135244.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 2',\n", |
||
| 5830 | " 'id': 'NZ_LR135244.1',\n", |
||
| 5831 | " 'name': 'NZ_LR135244.1'},\n", |
||
| 5832 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5833 | " 'description': 'NZ_LR135245.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 3',\n", |
||
| 5834 | " 'id': 'NZ_LR135245.1',\n", |
||
| 5835 | " 'name': 'NZ_LR135245.1'},\n", |
||
| 5836 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5837 | " 'description': 'NZ_LR135246.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 4',\n", |
||
| 5838 | " 'id': 'NZ_LR135246.1',\n", |
||
| 5839 | " 'name': 'NZ_LR135246.1'},\n", |
||
| 5840 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5841 | " 'description': 'NZ_LR135247.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 5',\n", |
||
| 5842 | " 'id': 'NZ_LR135247.1',\n", |
||
| 5843 | " 'name': 'NZ_LR135247.1'},\n", |
||
| 5844 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5845 | " 'description': 'NZ_LR135248.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 6',\n", |
||
| 5846 | " 'id': 'NZ_LR135248.1',\n", |
||
| 5847 | " 'name': 'NZ_LR135248.1'},\n", |
||
| 5848 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5849 | " 'description': 'NZ_LR135249.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 7',\n", |
||
| 5850 | " 'id': 'NZ_LR135249.1',\n", |
||
| 5851 | " 'name': 'NZ_LR135249.1'},\n", |
||
| 5852 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5853 | " 'description': 'NZ_LR135250.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 8',\n", |
||
| 5854 | " 'id': 'NZ_LR135250.1',\n", |
||
| 5855 | " 'name': 'NZ_LR135250.1'},\n", |
||
| 5856 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5857 | " 'description': 'NZ_LR135251.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 9',\n", |
||
| 5858 | " 'id': 'NZ_LR135251.1',\n", |
||
| 5859 | " 'name': 'NZ_LR135251.1'},\n", |
||
| 5860 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5861 | " 'description': 'NZ_LR135252.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 10',\n", |
||
| 5862 | " 'id': 'NZ_LR135252.1',\n", |
||
| 5863 | " 'name': 'NZ_LR135252.1'},\n", |
||
| 5864 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639415.1_E6988_hybrid_assembly_genomic.fna',\n", |
||
| 5865 | " 'description': 'NZ_LR135253.1 Enterococcus faecium isolate E6988 genome assembly, plasmid: 11',\n", |
||
| 5866 | " 'id': 'NZ_LR135253.1',\n", |
||
| 5867 | " 'name': 'NZ_LR135253.1'},\n", |
||
| 5868 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003812905.1_ASM381290v1_genomic.fna',\n", |
||
| 5869 | " 'description': 'NZ_CP033843.1 Pseudomonas aeruginosa strain FDAARGOS_501 chromosome, complete genome',\n", |
||
| 5870 | " 'id': 'NZ_CP033843.1',\n", |
||
| 5871 | " 'name': 'NZ_CP033843.1'},\n", |
||
| 5872 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001578125.1_ASM157812v1_genomic.fna',\n", |
||
| 5873 | " 'description': 'NZ_CP012735.1 Shigella flexneri 1a strain 0228, complete genome',\n", |
||
| 5874 | " 'id': 'NZ_CP012735.1',\n", |
||
| 5875 | " 'name': 'NZ_CP012735.1'},\n", |
||
| 5876 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001578125.1_ASM157812v1_genomic.fna',\n", |
||
| 5877 | " 'description': 'NZ_CP012732.1 Shigella flexneri 1a strain 0228 plasmid, complete sequence',\n", |
||
| 5878 | " 'id': 'NZ_CP012732.1',\n", |
||
| 5879 | " 'name': 'NZ_CP012732.1'},\n", |
||
| 5880 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001578125.1_ASM157812v1_genomic.fna',\n", |
||
| 5881 | " 'description': 'NZ_CP012733.1 Shigella flexneri 1a strain 0228 plasmid, complete sequence',\n", |
||
| 5882 | " 'id': 'NZ_CP012733.1',\n", |
||
| 5883 | " 'name': 'NZ_CP012733.1'},\n", |
||
| 5884 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001578125.1_ASM157812v1_genomic.fna',\n", |
||
| 5885 | " 'description': 'NZ_CP012734.1 Shigella flexneri 1a strain 0228 plasmid, complete sequence',\n", |
||
| 5886 | " 'id': 'NZ_CP012734.1',\n", |
||
| 5887 | " 'name': 'NZ_CP012734.1'},\n", |
||
| 5888 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001578125.1_ASM157812v1_genomic.fna',\n", |
||
| 5889 | " 'description': 'NZ_CP012736.1 Shigella flexneri 1a strain 0228 plasmid, complete sequence',\n", |
||
| 5890 | " 'id': 'NZ_CP012736.1',\n", |
||
| 5891 | " 'name': 'NZ_CP012736.1'},\n", |
||
| 5892 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001483885.1_ASM148388v1_genomic.fna',\n", |
||
| 5893 | " 'description': 'NZ_CP013727.1 Bacillus amyloliquefaciens strain MBE1283, complete genome',\n", |
||
| 5894 | " 'id': 'NZ_CP013727.1',\n", |
||
| 5895 | " 'name': 'NZ_CP013727.1'},\n", |
||
| 5896 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003390755.1_ASM339075v1_genomic.fna',\n", |
||
| 5897 | " 'description': 'NZ_CP022724.1 Bifidobacterium animalis subsp. lactis strain S7 chromosome, complete genome',\n", |
||
| 5898 | " 'id': 'NZ_CP022724.1',\n", |
||
| 5899 | " 'name': 'NZ_CP022724.1'},\n", |
||
| 5900 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002220755.1_ASM222075v1_genomic.fna',\n", |
||
| 5901 | " 'description': 'NZ_CP019684.1 Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589 chromosome, complete genome',\n", |
||
| 5902 | " 'id': 'NZ_CP019684.1',\n", |
||
| 5903 | " 'name': 'NZ_CP019684.1'},\n", |
||
| 5904 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002849955.1_ASM284995v1_genomic.fna',\n", |
||
| 5905 | " 'description': 'NZ_CP015498.1 Lactobacillus helveticus strain FAM22155 chromosome, complete genome',\n", |
||
| 5906 | " 'id': 'NZ_CP015498.1',\n", |
||
| 5907 | " 'name': 'NZ_CP015498.1'},\n", |
||
| 5908 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001507125.1_ASM150712v1_genomic.fna',\n", |
||
| 5909 | " 'description': 'NZ_CP010467.1 Campylobacter jejuni strain CJ677CC024, complete genome',\n", |
||
| 5910 | " 'id': 'NZ_CP010467.1',\n", |
||
| 5911 | " 'name': 'NZ_CP010467.1'},\n", |
||
| 5912 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001698105.1_ASM169810v1_genomic.fna',\n", |
||
| 5913 | " 'description': 'NZ_CP016683.1 Neisseria meningitidis strain M22191, complete genome',\n", |
||
| 5914 | " 'id': 'NZ_CP016683.1',\n", |
||
| 5915 | " 'name': 'NZ_CP016683.1'},\n", |
||
| 5916 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002838645.1_ASM283864v1_genomic.fna',\n", |
||
| 5917 | " 'description': 'NZ_CP023195.1 Bifidobacterium breve strain NRBB20 chromosome, complete genome',\n", |
||
| 5918 | " 'id': 'NZ_CP023195.1',\n", |
||
| 5919 | " 'name': 'NZ_CP023195.1'},\n", |
||
| 5920 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000016545.1_ASM1654v1_genomic.fna',\n", |
||
| 5921 | " 'description': 'NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete genome',\n", |
||
| 5922 | " 'id': 'NC_009437.1',\n", |
||
| 5923 | " 'name': 'NC_009437.1'},\n", |
||
| 5924 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001722045.1_ASM172204v1_genomic.fna',\n", |
||
| 5925 | " 'description': 'NZ_CP012582.1 Pseudomonas aeruginosa strain PA_D21, complete genome',\n", |
||
| 5926 | " 'id': 'NZ_CP012582.1',\n", |
||
| 5927 | " 'name': 'NZ_CP012582.1'},\n", |
||
| 5928 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000230295.1_ASM23029v1_genomic.fna',\n", |
||
| 5929 | " 'description': 'NC_017596.1 Streptococcus pyogenes Alab49, complete genome',\n", |
||
| 5930 | " 'id': 'NC_017596.1',\n", |
||
| 5931 | " 'name': 'NC_017596.1'},\n", |
||
| 5932 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000012665.1_ASM1266v1_genomic.fna',\n", |
||
| 5933 | " 'description': 'NC_007519.1 Desulfovibrio alaskensis G20, complete genome',\n", |
||
| 5934 | " 'id': 'NC_007519.1',\n", |
||
| 5935 | " 'name': 'NC_007519.1'},\n", |
||
| 5936 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002208645.1_ASM220864v1_genomic.fna',\n", |
||
| 5937 | " 'description': 'NZ_CP022001.1 Pseudomonas aeruginosa strain Pa1207 chromosome, complete genome',\n", |
||
| 5938 | " 'id': 'NZ_CP022001.1',\n", |
||
| 5939 | " 'name': 'NZ_CP022001.1'},\n", |
||
| 5940 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001889305.1_ASM188930v1_genomic.fna',\n", |
||
| 5941 | " 'description': 'NZ_CP013074.1 Dehalococcoides mccartyi strain CG3, complete genome',\n", |
||
| 5942 | " 'id': 'NZ_CP013074.1',\n", |
||
| 5943 | " 'name': 'NZ_CP013074.1'},\n", |
||
| 5944 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000497485.1_ASM49748v1_genomic.fna',\n", |
||
| 5945 | " 'description': 'NC_022898.1 Bacillus subtilis PY79, complete genome',\n", |
||
| 5946 | " 'id': 'NC_022898.1',\n", |
||
| 5947 | " 'name': 'NC_022898.1'},\n", |
||
| 5948 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000154785.2_ASM15478v2_genomic.fna',\n", |
||
| 5949 | " 'description': 'NC_015730.1 Roseobacter litoralis Och 149, complete genome',\n", |
||
| 5950 | " 'id': 'NC_015730.1',\n", |
||
| 5951 | " 'name': 'NC_015730.1'},\n", |
||
| 5952 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002104595.1_ASM210459v1_genomic.fna',\n", |
||
| 5953 | " 'description': 'NZ_CP020704.1 Pseudomonas aeruginosa strain PASGNDM699 chromosome, complete genome',\n", |
||
| 5954 | " 'id': 'NZ_CP020704.1',\n", |
||
| 5955 | " 'name': 'NZ_CP020704.1'},\n", |
||
| 5956 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900176205.1_BRAD285_PRJEB202261_v1_genomic.fna',\n", |
||
| 5957 | " 'description': 'NZ_LT859959.1 Bradyrhizobium sp. ORS 285 strain ORS285 genome assembly, chromosome: BRAD285',\n", |
||
| 5958 | " 'id': 'NZ_LT859959.1',\n", |
||
| 5959 | " 'name': 'NZ_LT859959.1'},\n", |
||
| 5960 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000355695.1_ASM35569v1_genomic.fna',\n", |
||
| 5961 | " 'description': 'NC_020891.1 Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 complete genome',\n", |
||
| 5962 | " 'id': 'NC_020891.1',\n", |
||
| 5963 | " 'name': 'NC_020891.1'},\n", |
||
| 5964 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001302645.1_ASM130264v1_genomic.fna',\n", |
||
| 5965 | " 'description': 'NZ_CP012650.1 Lactobacillus plantarum strain HFC8, complete genome',\n", |
||
| 5966 | " 'id': 'NZ_CP012650.1',\n", |
||
| 5967 | " 'name': 'NZ_CP012650.1'},\n", |
||
| 5968 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001506885.1_ASM150688v1_genomic.fna',\n", |
||
| 5969 | " 'description': 'NZ_CP010510.1 Campylobacter jejuni strain CJ677CC040, complete genome',\n", |
||
| 5970 | " 'id': 'NZ_CP010510.1',\n", |
||
| 5971 | " 'name': 'NZ_CP010510.1'},\n", |
||
| 5972 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000026725.1_ASM2672v1_genomic.fna',\n", |
||
| 5973 | " 'description': 'NC_012924.1 Streptococcus suis SC84 complete genome, strain SC84',\n", |
||
| 5974 | " 'id': 'NC_012924.1',\n", |
||
| 5975 | " 'name': 'NC_012924.1'},\n", |
||
| 5976 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002218245.1_ASM221824v1_genomic.fna',\n", |
||
| 5977 | " 'description': 'NZ_CP022263.1 Xanthomonas citri pv. vignicola strain CFBP7111 chromosome, complete genome',\n", |
||
| 5978 | " 'id': 'NZ_CP022263.1',\n", |
||
| 5979 | " 'name': 'NZ_CP022263.1'},\n", |
||
| 5980 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004014695.1_ASM401469v1_genomic.fna',\n", |
||
| 5981 | " 'description': 'NZ_CP034836.1 Hahella sp. KA22 chromosome, complete genome',\n", |
||
| 5982 | " 'id': 'NZ_CP034836.1',\n", |
||
| 5983 | " 'name': 'NZ_CP034836.1'},\n", |
||
| 5984 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001721685.1_ASM172168v1_genomic.fna',\n", |
||
| 5985 | " 'description': 'NZ_CP012502.1 Bacillus beveridgei strain MLTeJB, complete genome',\n", |
||
| 5986 | " 'id': 'NZ_CP012502.1',\n", |
||
| 5987 | " 'name': 'NZ_CP012502.1'},\n", |
||
| 5988 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003966525.1_ASM396652v1_genomic.fna',\n", |
||
| 5989 | " 'description': 'NZ_AP018936.1 Streptococcus pneumoniae NU83127 DNA, complete genome',\n", |
||
| 5990 | " 'id': 'NZ_AP018936.1',\n", |
||
| 5991 | " 'name': 'NZ_AP018936.1'},\n", |
||
| 5992 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001902395.1_ASM190239v1_genomic.fna',\n", |
||
| 5993 | " 'description': 'NZ_CP018458.1 Klebsiella pneumoniae strain Kp_Goe_39795, complete genome',\n", |
||
| 5994 | " 'id': 'NZ_CP018458.1',\n", |
||
| 5995 | " 'name': 'NZ_CP018458.1'},\n", |
||
| 5996 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000189775.2_ASM18977v3_genomic.fna',\n", |
||
| 5997 | " 'description': 'NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11, complete genome',\n", |
||
| 5998 | " 'id': 'NC_015555.1',\n", |
||
| 5999 | " 'name': 'NC_015555.1'},\n", |
||
| 6000 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003813025.1_ASM381302v1_genomic.fna',\n", |
||
| 6001 | " 'description': 'NZ_CP033835.1 Pseudomonas aeruginosa strain FDAARGOS_570 chromosome, complete genome',\n", |
||
| 6002 | " 'id': 'NZ_CP033835.1',\n", |
||
| 6003 | " 'name': 'NZ_CP033835.1'},\n", |
||
| 6004 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001521855.1_ASM152185v1_genomic.fna',\n", |
||
| 6005 | " 'description': 'NZ_CP013998.1 Synechococcus sp. PCC 73109, complete genome',\n", |
||
| 6006 | " 'id': 'NZ_CP013998.1',\n", |
||
| 6007 | " 'name': 'NZ_CP013998.1'},\n", |
||
| 6008 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004136295.1_ASM413629v1_genomic.fna',\n", |
||
| 6009 | " 'description': 'NZ_CP029606.1 Methylibium sp. Pch-M chromosome, complete genome',\n", |
||
| 6010 | " 'id': 'NZ_CP029606.1',\n", |
||
| 6011 | " 'name': 'NZ_CP029606.1'},\n", |
||
| 6012 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001606235.1_ASM160623v1_genomic.fna',\n", |
||
| 6013 | " 'description': 'NZ_CP014952.1 Mycobacterium abscessus strain FLAC005 chromosome, complete genome',\n", |
||
| 6014 | " 'id': 'NZ_CP014952.1',\n", |
||
| 6015 | " 'name': 'NZ_CP014952.1'},\n", |
||
| 6016 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003006155.1_ASM300615v1_genomic.fna',\n", |
||
| 6017 | " 'description': 'NZ_CP023559.1 Salinicola tamaricis strain F01 chromosome, complete genome',\n", |
||
| 6018 | " 'id': 'NZ_CP023559.1',\n", |
||
| 6019 | " 'name': 'NZ_CP023559.1'},\n", |
||
| 6020 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000306805.1_ASM30680v1_genomic.fna',\n", |
||
| 6021 | " 'description': 'NC_018073.1 Streptococcus intermedius JTH08 DNA, complete genome',\n", |
||
| 6022 | " 'id': 'NC_018073.1',\n", |
||
| 6023 | " 'name': 'NC_018073.1'},\n", |
||
| 6024 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003663745.1_ASM366374v1_genomic.fna',\n", |
||
| 6025 | " 'description': 'NZ_CP032848.1 Brevibacillus laterosporus strain Bl-zj chromosome, complete genome',\n", |
||
| 6026 | " 'id': 'NZ_CP032848.1',\n", |
||
| 6027 | " 'name': 'NZ_CP032848.1'},\n", |
||
| 6028 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002386285.1_ASM238628v1_genomic.fna',\n", |
||
| 6029 | " 'description': 'NZ_CP023511.1 Streptococcus gordonii strain FDAARGOS_371 chromosome, complete genome',\n", |
||
| 6030 | " 'id': 'NZ_CP023511.1',\n", |
||
| 6031 | " 'name': 'NZ_CP023511.1'},\n", |
||
| 6032 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001713475.1_ASM171347v1_genomic.fna',\n", |
||
| 6033 | " 'description': 'NZ_CP016499.1 Agrobacterium sp. RAC06 chromosome, complete genome',\n", |
||
| 6034 | " 'id': 'NZ_CP016499.1',\n", |
||
| 6035 | " 'name': 'NZ_CP016499.1'},\n", |
||
| 6036 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002197045.1_ASM219704v1_genomic.fna',\n", |
||
| 6037 | " 'description': 'NZ_CP021808.1 Sinorhizobium meliloti strain Rm41 chromosome, complete genome',\n", |
||
| 6038 | " 'id': 'NZ_CP021808.1',\n", |
||
| 6039 | " 'name': 'NZ_CP021808.1'},\n", |
||
| 6040 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003112225.1_ASM311222v1_genomic.fna',\n", |
||
| 6041 | " 'description': 'NZ_CP028126.1 Escherichia coli O26 str. RM10386 chromosome, complete genome',\n", |
||
| 6042 | " 'id': 'NZ_CP028126.1',\n", |
||
| 6043 | " 'name': 'NZ_CP028126.1'},\n", |
||
| 6044 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003018715.1_ASM301871v1_genomic.fna',\n", |
||
| 6045 | " 'description': 'NZ_CP027331.1 Escherichia coli strain 2013C-3277 chromosome, complete genome',\n", |
||
| 6046 | " 'id': 'NZ_CP027331.1',\n", |
||
| 6047 | " 'name': 'NZ_CP027331.1'},\n", |
||
| 6048 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001026965.1_ASM102696v1_genomic.fna',\n", |
||
| 6049 | " 'description': 'NZ_CP010779.1 Acinetobacter baumannii strain XH386, complete genome',\n", |
||
| 6050 | " 'id': 'NZ_CP010779.1',\n", |
||
| 6051 | " 'name': 'NZ_CP010779.1'},\n", |
||
| 6052 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003586045.1_E.coli_isolate_genomic.fna',\n", |
||
| 6053 | " 'description': 'NZ_CP019953.1 Escherichia coli M8 chromosome, complete genome',\n", |
||
| 6054 | " 'id': 'NZ_CP019953.1',\n", |
||
| 6055 | " 'name': 'NZ_CP019953.1'},\n", |
||
| 6056 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001987455.1_ASM198745v1_genomic.fna',\n", |
||
| 6057 | " 'description': 'NZ_CP011740.1 Bordetella pertussis strain I461, complete genome',\n", |
||
| 6058 | " 'id': 'NZ_CP011740.1',\n", |
||
| 6059 | " 'name': 'NZ_CP011740.1'},\n", |
||
| 6060 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002000585.1_ASM200058v1_genomic.fna',\n", |
||
| 6061 | " 'description': 'NZ_CP014397.1 Staphylococcus aureus strain USA300-SUR10, complete genome',\n", |
||
| 6062 | " 'id': 'NZ_CP014397.1',\n", |
||
| 6063 | " 'name': 'NZ_CP014397.1'},\n", |
||
| 6064 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000590495.2_ASM59049v2_genomic.fna',\n", |
||
| 6065 | " 'description': 'NC_022904.2 Pandoraea pnomenusa 3kgm, complete genome',\n", |
||
| 6066 | " 'id': 'NC_022904.2',\n", |
||
| 6067 | " 'name': 'NC_022904.2'},\n", |
||
| 6068 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002407165.1_ASM240716v1_genomic.fna',\n", |
||
| 6069 | " 'description': 'NZ_CP023539.1 Staphylococcus lugdunensis strain FDAARGOS_377 chromosome, complete genome',\n", |
||
| 6070 | " 'id': 'NZ_CP023539.1',\n", |
||
| 6071 | " 'name': 'NZ_CP023539.1'},\n", |
||
| 6072 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003351665.1_ASM335166v1_genomic.fna',\n", |
||
| 6073 | " 'description': 'NZ_CP031251.1 Neisseria subflava strain M18660 chromosome, complete genome',\n", |
||
| 6074 | " 'id': 'NZ_CP031251.1',\n", |
||
| 6075 | " 'name': 'NZ_CP031251.1'},\n", |
||
| 6076 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001590695.1_ASM159069v1_genomic.fna',\n", |
||
| 6077 | " 'description': 'NZ_CP014257.1 Legionella pneumophila subsp. pascullei strain D-7119, complete genome',\n", |
||
| 6078 | " 'id': 'NZ_CP014257.1',\n", |
||
| 6079 | " 'name': 'NZ_CP014257.1'},\n", |
||
| 6080 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900638365.1_57428_D01_genomic.fna',\n", |
||
| 6081 | " 'description': 'NZ_LR134511.1 Campylobacter jejuni subsp. jejuni strain NCTC10983 genome assembly, chromosome: 1',\n", |
||
| 6082 | " 'id': 'NZ_LR134511.1',\n", |
||
| 6083 | " 'name': 'NZ_LR134511.1'},\n", |
||
| 6084 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000014745.1_ASM1474v1_genomic.fna',\n", |
||
| 6085 | " 'description': 'NC_008347.1 Maricaulis maris MCS10, complete genome',\n", |
||
| 6086 | " 'id': 'NC_008347.1',\n", |
||
| 6087 | " 'name': 'NC_008347.1'},\n", |
||
| 6088 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000341665.1_ASM34166v1_genomic.fna',\n", |
||
| 6089 | " 'description': 'NC_020376.1 Bacillus thuringiensis serovar thuringiensis str. IS5056, complete genome',\n", |
||
| 6090 | " 'id': 'NC_020376.1',\n", |
||
| 6091 | " 'name': 'NC_020376.1'},\n", |
||
| 6092 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004119675.1_ASM411967v1_genomic.fna',\n", |
||
| 6093 | " 'description': 'NZ_CP035397.1 Bacillus subtilis strain SRCM103773 chromosome, complete genome',\n", |
||
| 6094 | " 'id': 'NZ_CP035397.1',\n", |
||
| 6095 | " 'name': 'NZ_CP035397.1'},\n", |
||
| 6096 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004088075.1_ASM408807v1_genomic.fna',\n", |
||
| 6097 | " 'description': 'NZ_CP035106.1 Helicobacter pylori strain Hpbs3 chromosome, complete genome',\n", |
||
| 6098 | " 'id': 'NZ_CP035106.1',\n", |
||
| 6099 | " 'name': 'NZ_CP035106.1'},\n", |
||
| 6100 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000007705.1_ASM770v1_genomic.fna',\n", |
||
| 6101 | " 'description': 'NC_005085.1 Chromobacterium violaceum ATCC 12472, complete genome',\n", |
||
| 6102 | " 'id': 'NC_005085.1',\n", |
||
| 6103 | " 'name': 'NC_005085.1'},\n", |
||
| 6104 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003285045.1_ASM328504v1_genomic.fna',\n", |
||
| 6105 | " 'description': 'NZ_CP030140.1 Mycoplasma anseris strain ATCC 49234 chromosome, complete genome',\n", |
||
| 6106 | " 'id': 'NZ_CP030140.1',\n", |
||
| 6107 | " 'name': 'NZ_CP030140.1'},\n", |
||
| 6108 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000422125.1_ASM42212v1_genomic.fna',\n", |
||
| 6109 | " 'description': 'NC_021740.1 Mycobacterium tuberculosis EAI5, complete genome',\n", |
||
| 6110 | " 'id': 'NC_021740.1',\n", |
||
| 6111 | " 'name': 'NC_021740.1'},\n", |
||
| 6112 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000069965.1_ASM6996v1_genomic.fna',\n", |
||
| 6113 | " 'description': 'NC_010554.1 Proteus mirabilis strain HI4320, complete genome',\n", |
||
| 6114 | " 'id': 'NC_010554.1',\n", |
||
| 6115 | " 'name': 'NC_010554.1'},\n", |
||
| 6116 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000069965.1_ASM6996v1_genomic.fna',\n", |
||
| 6117 | " 'description': 'NC_010555.1 Proteus mirabilis pHI4320 plasmid, complete genome',\n", |
||
| 6118 | " 'id': 'NC_010555.1',\n", |
||
| 6119 | " 'name': 'NC_010555.1'},\n", |
||
| 6120 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000949425.1_ASM94942v1_genomic.fna',\n", |
||
| 6121 | " 'description': 'NZ_CP010976.1 Paenibacillus sp. IHBB 10380, complete genome',\n", |
||
| 6122 | " 'id': 'NZ_CP010976.1',\n", |
||
| 6123 | " 'name': 'NZ_CP010976.1'},\n", |
||
| 6124 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000949425.1_ASM94942v1_genomic.fna',\n", |
||
| 6125 | " 'description': 'NZ_CP010977.1 Paenibacillus sp. IHBB 10380 plasmid, complete sequence',\n", |
||
| 6126 | " 'id': 'NZ_CP010977.1',\n", |
||
| 6127 | " 'name': 'NZ_CP010977.1'},\n", |
||
| 6128 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002334685.1_ASM233468v1_genomic.fna',\n", |
||
| 6129 | " 'description': 'NZ_CP023415.1 Desulfovibrio sp. G11 chromosome, complete genome',\n", |
||
| 6130 | " 'id': 'NZ_CP023415.1',\n", |
||
| 6131 | " 'name': 'NZ_CP023415.1'},\n", |
||
| 6132 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002504285.1_ASM250428v1_genomic.fna',\n", |
||
| 6133 | " 'description': 'NZ_CP023706.1 Edwardsiella tarda strain KC-Pc-HB1 chromosome, complete genome',\n", |
||
| 6134 | " 'id': 'NZ_CP023706.1',\n", |
||
| 6135 | " 'name': 'NZ_CP023706.1'},\n", |
||
| 6136 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002286035.1_ASM228603v1_genomic.fna',\n", |
||
| 6137 | " 'description': 'NZ_CP016960.1 Bordetella pertussis strain D735, complete genome',\n", |
||
| 6138 | " 'id': 'NZ_CP016960.1',\n", |
||
| 6139 | " 'name': 'NZ_CP016960.1'},\n", |
||
| 6140 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001921985.1_ASM192198v1_genomic.fna',\n", |
||
| 6141 | " 'description': 'NZ_CP013707.1 Clostridium botulinum strain F634 chromosome, complete genome',\n", |
||
| 6142 | " 'id': 'NZ_CP013707.1',\n", |
||
| 6143 | " 'name': 'NZ_CP013707.1'},\n", |
||
| 6144 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001908725.1_ASM190872v1_genomic.fna',\n", |
||
| 6145 | " 'description': 'NZ_CP018725.1 Xanthomonas vesicatoria ATCC 35937 strain LMG911 chromosome, complete genome',\n", |
||
| 6146 | " 'id': 'NZ_CP018725.1',\n", |
||
| 6147 | " 'name': 'NZ_CP018725.1'},\n", |
||
| 6148 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003515645.1_ASM351564v1_genomic.fna',\n", |
||
| 6149 | " 'description': 'NZ_CP022927.1 Mycobacterium shigaense strain SCY chromosome, complete genome',\n", |
||
| 6150 | " 'id': 'NZ_CP022927.1',\n", |
||
| 6151 | " 'name': 'NZ_CP022927.1'},\n", |
||
| 6152 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001545155.1_ASM154515v1_genomic.fna',\n", |
||
| 6153 | " 'description': 'NZ_CP014226.1 Halomonas chromatireducens strain AGD 8-3, complete genome',\n", |
||
| 6154 | " 'id': 'NZ_CP014226.1',\n", |
||
| 6155 | " 'name': 'NZ_CP014226.1'},\n", |
||
| 6156 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900478265.1_33962_C02_genomic.fna',\n", |
||
| 6157 | " 'description': 'NZ_LS483485.1 Aggregatibacter aphrophilus strain NCTC11096 genome assembly, chromosome: 1',\n", |
||
| 6158 | " 'id': 'NZ_LS483485.1',\n", |
||
| 6159 | " 'name': 'NZ_LS483485.1'},\n", |
||
| 6160 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000317875.1_ASM31787v1_genomic.fna',\n", |
||
| 6161 | " 'description': 'NC_019563.1 Helicobacter pylori Aklavik86, complete genome',\n", |
||
| 6162 | " 'id': 'NC_019563.1',\n", |
||
| 6163 | " 'name': 'NC_019563.1'},\n", |
||
| 6164 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002240075.1_ASM224007v1_genomic.fna',\n", |
||
| 6165 | " 'description': 'NZ_CP020336.1 Shigella flexneri 4c strain 1602 chromosome, complete genome',\n", |
||
| 6166 | " 'id': 'NZ_CP020336.1',\n", |
||
| 6167 | " 'name': 'NZ_CP020336.1'},\n", |
||
| 6168 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635835.1_34410_B02_genomic.fna',\n", |
||
| 6169 | " 'description': 'NZ_LR134178.1 Legionella sainthelensi strain NCTC12450 genome assembly, chromosome: 1',\n", |
||
| 6170 | " 'id': 'NZ_LR134178.1',\n", |
||
| 6171 | " 'name': 'NZ_LR134178.1'},\n", |
||
| 6172 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003711045.1_ASM371104v1_genomic.fna',\n", |
||
| 6173 | " 'description': 'NZ_CP033401.1 Escherichia coli strain WCHEC020031 chromosome, complete genome',\n", |
||
| 6174 | " 'id': 'NZ_CP033401.1',\n", |
||
| 6175 | " 'name': 'NZ_CP033401.1'},\n", |
||
| 6176 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001941805.1_ASM194180v1_genomic.fna',\n", |
||
| 6177 | " 'description': 'NZ_CP019041.1 Acinetobacter junii strain 65, complete genome',\n", |
||
| 6178 | " 'id': 'NZ_CP019041.1',\n", |
||
| 6179 | " 'name': 'NZ_CP019041.1'},\n", |
||
| 6180 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900683405.1_57566_G01_genomic.fna',\n", |
||
| 6181 | " 'description': 'NZ_LR215967.1 Chryseobacterium indologenes strain 3012STDY6981895 genome assembly, chromosome: 1',\n", |
||
| 6182 | " 'id': 'NZ_LR215967.1',\n", |
||
| 6183 | " 'name': 'NZ_LR215967.1'},\n", |
||
| 6184 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000213135.1_ASM21313v1_genomic.fna',\n", |
||
| 6185 | " 'description': 'NC_017375.1 Helicobacter pylori 83, complete genome',\n", |
||
| 6186 | " 'id': 'NC_017375.1',\n", |
||
| 6187 | " 'name': 'NC_017375.1'},\n", |
||
| 6188 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900478025.1_48128_C02_genomic.fna',\n", |
||
| 6189 | " 'description': 'NZ_LS483462.1 Streptococcus pasteurianus strain NCTC13784 genome assembly, chromosome: 1',\n", |
||
| 6190 | " 'id': 'NZ_LS483462.1',\n", |
||
| 6191 | " 'name': 'NZ_LS483462.1'},\n", |
||
| 6192 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002591075.1_ASM259107v1_genomic.fna',\n", |
||
| 6193 | " 'description': 'NZ_CP023913.1 Klebsiella pneumoniae strain FDAARGOS_439 chromosome, complete genome',\n", |
||
| 6194 | " 'id': 'NZ_CP023913.1',\n", |
||
| 6195 | " 'name': 'NZ_CP023913.1'},\n", |
||
| 6196 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003999315.1_ASM399931v1_genomic.fna',\n", |
||
| 6197 | " 'description': 'NZ_CP025334.1 Brevibacterium aurantiacum strain SMQ-1420 chromosome, complete genome',\n", |
||
| 6198 | " 'id': 'NZ_CP025334.1',\n", |
||
| 6199 | " 'name': 'NZ_CP025334.1'},\n", |
||
| 6200 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000007125.1_ASM712v1_genomic.fna',\n", |
||
| 6201 | " 'description': 'NC_003317.1 Brucella melitensis bv. 1 str. 16M chromosome I, complete sequence',\n", |
||
| 6202 | " 'id': 'NC_003317.1',\n", |
||
| 6203 | " 'name': 'NC_003317.1'},\n", |
||
| 6204 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000007125.1_ASM712v1_genomic.fna',\n", |
||
| 6205 | " 'description': 'NC_003318.1 Brucella melitensis 16M chromosome II, complete sequence',\n", |
||
| 6206 | " 'id': 'NC_003318.1',\n", |
||
| 6207 | " 'name': 'NC_003318.1'},\n", |
||
| 6208 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001610775.1_ASM161077v1_genomic.fna',\n", |
||
| 6209 | " 'description': 'NZ_CP011127.1 Dehalococcoides mccartyi strain 11a5, complete genome',\n", |
||
| 6210 | " 'id': 'NZ_CP011127.1',\n", |
||
| 6211 | " 'name': 'NZ_CP011127.1'},\n", |
||
| 6212 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004154185.1_ASM415418v1_genomic.fna',\n", |
||
| 6213 | " 'description': 'NZ_CP031627.1 Streptococcus pyogenes strain MGAS28360 chromosome, complete genome',\n", |
||
| 6214 | " 'id': 'NZ_CP031627.1',\n", |
||
| 6215 | " 'name': 'NZ_CP031627.1'},\n", |
||
| 6216 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000092245.1_ASM9224v1_genomic.fna',\n", |
||
| 6217 | " 'description': 'NC_014166.1 Arcobacter nitrofigilis DSM 7299, complete genome',\n", |
||
| 6218 | " 'id': 'NC_014166.1',\n", |
||
| 6219 | " 'name': 'NC_014166.1'},\n", |
||
| 6220 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003086355.1_ASM308635v2_genomic.fna',\n", |
||
| 6221 | " 'description': 'NZ_CP031733.1 Streptococcus sp. Z15 chromosome, complete genome',\n", |
||
| 6222 | " 'id': 'NZ_CP031733.1',\n", |
||
| 6223 | " 'name': 'NZ_CP031733.1'},\n", |
||
| 6224 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001019395.2_ASM101939v2_genomic.fna',\n", |
||
| 6225 | " 'description': 'NZ_CP026066.1 Staphylococcus aureus strain NRS484 chromosome, complete genome',\n", |
||
| 6226 | " 'id': 'NZ_CP026066.1',\n", |
||
| 6227 | " 'name': 'NZ_CP026066.1'},\n", |
||
| 6228 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000243115.2_ASM24311v3_genomic.fna',\n", |
||
| 6229 | " 'description': 'NZ_CP007035.1 Niabella soli DSM 19437, complete genome',\n", |
||
| 6230 | " 'id': 'NZ_CP007035.1',\n", |
||
| 6231 | " 'name': 'NZ_CP007035.1'},\n", |
||
| 6232 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002443035.1_ASM244303v1_genomic.fna',\n", |
||
| 6233 | " 'description': 'NZ_CP022547.1 Streptococcus thermophilus strain B59671 chromosome, complete genome',\n", |
||
| 6234 | " 'id': 'NZ_CP022547.1',\n", |
||
| 6235 | " 'name': 'NZ_CP022547.1'},\n", |
||
| 6236 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001559115.2_ASM155911v2_genomic.fna',\n", |
||
| 6237 | " 'description': 'NZ_CP014016.2 Staphylococcus simulans strain FDAARGOS_124, complete genome',\n", |
||
| 6238 | " 'id': 'NZ_CP014016.2',\n", |
||
| 6239 | " 'name': 'NZ_CP014016.2'},\n", |
||
| 6240 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000166775.1_ASM16677v1_genomic.fna',\n", |
||
| 6241 | " 'description': 'NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete genome',\n", |
||
| 6242 | " 'id': 'NC_014720.1',\n", |
||
| 6243 | " 'name': 'NC_014720.1'},\n", |
||
| 6244 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900087375.1_PFRJS12-2_genomic.fna',\n", |
||
| 6245 | " 'description': 'NZ_LT576787.1 Propionibacterium freudenreichii isolate PFRJS12 genome assembly, chromosome: II',\n", |
||
| 6246 | " 'id': 'NZ_LT576787.1',\n", |
||
| 6247 | " 'name': 'NZ_LT576787.1'},\n", |
||
| 6248 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900187045.1_51485_B01_genomic.fna',\n", |
||
| 6249 | " 'description': 'NZ_LT906453.1 Dermatophilus congolensis strain NCTC13039 genome assembly, chromosome: 1',\n", |
||
| 6250 | " 'id': 'NZ_LT906453.1',\n", |
||
| 6251 | " 'name': 'NZ_LT906453.1'},\n", |
||
| 6252 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001039415.1_ASM103941v1_genomic.fna',\n", |
||
| 6253 | " 'description': 'NZ_CP011938.1 Escherichia coli strain C43(DE3), complete genome',\n", |
||
| 6254 | " 'id': 'NZ_CP011938.1',\n", |
||
| 6255 | " 'name': 'NZ_CP011938.1'},\n", |
||
| 6256 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002237535.1_ASM223753v1_genomic.fna',\n", |
||
| 6257 | " 'description': 'NZ_CP022530.1 Bacterioplanes sanyensis strain NV9 chromosome, complete genome',\n", |
||
| 6258 | " 'id': 'NZ_CP022530.1',\n", |
||
| 6259 | " 'name': 'NZ_CP022530.1'},\n", |
||
| 6260 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000834235.1_ASM83423v1_genomic.fna',\n", |
||
| 6261 | " 'description': 'NZ_CP009492.1 Yersinia pestis strain PBM19, complete genome',\n", |
||
| 6262 | " 'id': 'NZ_CP009492.1',\n", |
||
| 6263 | " 'name': 'NZ_CP009492.1'},\n", |
||
| 6264 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002127965.1_ASM212796v1_genomic.fna',\n", |
||
| 6265 | " 'description': 'NZ_CP018787.1 Oxalobacter formigenes strain HC-1, complete genome',\n", |
||
| 6266 | " 'id': 'NZ_CP018787.1',\n", |
||
| 6267 | " 'name': 'NZ_CP018787.1'},\n", |
||
| 6268 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003950235.1_ASM395023v1_genomic.fna',\n", |
||
| 6269 | " 'description': 'NZ_CP034368.1 Pseudomonas aeruginosa strain B41226 chromosome, complete genome',\n", |
||
| 6270 | " 'id': 'NZ_CP034368.1',\n", |
||
| 6271 | " 'name': 'NZ_CP034368.1'},\n", |
||
| 6272 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000746665.1_ASM74666v1_genomic.fna',\n", |
||
| 6273 | " 'description': 'NZ_CP009261.1 Vibrio vulnificus strain 93U204 chromosome I, complete sequence',\n", |
||
| 6274 | " 'id': 'NZ_CP009261.1',\n", |
||
| 6275 | " 'name': 'NZ_CP009261.1'},\n", |
||
| 6276 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000746665.1_ASM74666v1_genomic.fna',\n", |
||
| 6277 | " 'description': 'NZ_CP009262.1 Vibrio vulnificus strain 93U204 chromosome II, complete sequence',\n", |
||
| 6278 | " 'id': 'NZ_CP009262.1',\n", |
||
| 6279 | " 'name': 'NZ_CP009262.1'},\n", |
||
| 6280 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004014895.1_ASM401489v1_genomic.fna',\n", |
||
| 6281 | " 'description': 'NZ_CP032354.1 Klebsiella variicola strain 15WZ-82 chromosome, complete genome',\n", |
||
| 6282 | " 'id': 'NZ_CP032354.1',\n", |
||
| 6283 | " 'name': 'NZ_CP032354.1'},\n", |
||
| 6284 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000212355.1_ASM21235v1_genomic.fna',\n", |
||
| 6285 | " 'description': 'NC_015496.1 Dokdonia sp. 4H-3-7-5, complete genome',\n", |
||
| 6286 | " 'id': 'NC_015496.1',\n", |
||
| 6287 | " 'name': 'NC_015496.1'},\n", |
||
| 6288 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002022145.1_ASM202214v1_genomic.fna',\n", |
||
| 6289 | " 'description': 'NZ_CP016378.1 Elizabethkingia meningoseptica strain G4120, complete genome',\n", |
||
| 6290 | " 'id': 'NZ_CP016378.1',\n", |
||
| 6291 | " 'name': 'NZ_CP016378.1'},\n", |
||
| 6292 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003856735.1_ASM385673v1_genomic.fna',\n", |
||
| 6293 | " 'description': 'NZ_CP024959.1 Bifidobacterium adolescentis strain P2P3 chromosome, complete genome',\n", |
||
| 6294 | " 'id': 'NZ_CP024959.1',\n", |
||
| 6295 | " 'name': 'NZ_CP024959.1'},\n", |
||
| 6296 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001079465.2_STyphi_1553_1_genomic.fna',\n", |
||
| 6297 | " 'description': 'NZ_LT904871.1 Salmonella enterica subsp. enterica serovar Typhi strain 1553 genome assembly, chromosome: 1',\n", |
||
| 6298 | " 'id': 'NZ_LT904871.1',\n", |
||
| 6299 | " 'name': 'NZ_LT904871.1'},\n", |
||
| 6300 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003798345.1_ASM379834v1_genomic.fna',\n", |
||
| 6301 | " 'description': 'NZ_CP033696.1 Yersinia pestis strain FDAARGOS_602 chromosome, complete genome',\n", |
||
| 6302 | " 'id': 'NZ_CP033696.1',\n", |
||
| 6303 | " 'name': 'NZ_CP033696.1'},\n", |
||
| 6304 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000186345.1_ASM18634v1_genomic.fna',\n", |
||
| 6305 | " 'description': 'NC_014962.1 Isosphaera pallida ATCC 43644, complete genome',\n", |
||
| 6306 | " 'id': 'NC_014962.1',\n", |
||
| 6307 | " 'name': 'NC_014962.1'},\n", |
||
| 6308 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000706725.1_ASM70672v1_genomic.fna',\n", |
||
| 6309 | " 'description': 'NZ_CP003923.1 Bacillus lehensis G1, complete genome',\n", |
||
| 6310 | " 'id': 'NZ_CP003923.1',\n", |
||
| 6311 | " 'name': 'NZ_CP003923.1'},\n", |
||
| 6312 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003072605.1_ASM307260v1_genomic.fna',\n", |
||
| 6313 | " 'description': 'NZ_CP026736.1 Bacillus megaterium strain YC4-R4 chromosome, complete genome',\n", |
||
| 6314 | " 'id': 'NZ_CP026736.1',\n", |
||
| 6315 | " 'name': 'NZ_CP026736.1'},\n", |
||
| 6316 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001008015.1_ASM100801v1_genomic.fna',\n", |
||
| 6317 | " 'description': 'NZ_CP010999.1 Streptococcus thermophilus strain MN-BM-A02, complete genome',\n", |
||
| 6318 | " 'id': 'NZ_CP010999.1',\n", |
||
| 6319 | " 'name': 'NZ_CP010999.1'},\n", |
||
| 6320 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003194025.1_ASM319402v1_genomic.fna',\n", |
||
| 6321 | " 'description': 'NZ_CP029680.1 Staphylococcus aureus strain AR_0215 chromosome, complete genome',\n", |
||
| 6322 | " 'id': 'NZ_CP029680.1',\n", |
||
| 6323 | " 'name': 'NZ_CP029680.1'},\n", |
||
| 6324 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003312875.1_ASM331287v1_genomic.fna',\n", |
||
| 6325 | " 'description': 'NZ_CP015163.1 Amycolatopsis albispora strain WP1 chromosome, complete genome',\n", |
||
| 6326 | " 'id': 'NZ_CP015163.1',\n", |
||
| 6327 | " 'name': 'NZ_CP015163.1'},\n", |
||
| 6328 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900636635.1_43721_H02_genomic.fna',\n", |
||
| 6329 | " 'description': 'NZ_LR134300.1 Pseudomonas fluorescens strain NCTC10783 genome assembly, chromosome: 1',\n", |
||
| 6330 | " 'id': 'NZ_LR134300.1',\n", |
||
| 6331 | " 'name': 'NZ_LR134300.1'},\n", |
||
| 6332 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000963555.1_ASM96355v1_genomic.fna',\n", |
||
| 6333 | " 'description': 'NZ_CP009042.1 Vibrio cholerae O1 biovar El Tor strain FJ147 chromosome I, complete sequence',\n", |
||
| 6334 | " 'id': 'NZ_CP009042.1',\n", |
||
| 6335 | " 'name': 'NZ_CP009042.1'},\n", |
||
| 6336 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000963555.1_ASM96355v1_genomic.fna',\n", |
||
| 6337 | " 'description': 'NZ_CP009041.1 Vibrio cholerae O1 biovar El Tor strain FJ147 chromosome II, complete sequence',\n", |
||
| 6338 | " 'id': 'NZ_CP009041.1',\n", |
||
| 6339 | " 'name': 'NZ_CP009041.1'},\n", |
||
| 6340 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000818115.1_ASM81811v1_genomic.fna',\n", |
||
| 6341 | " 'description': 'NZ_CP009559.1 Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC 50503, complete genome',\n", |
||
| 6342 | " 'id': 'NZ_CP009559.1',\n", |
||
| 6343 | " 'name': 'NZ_CP009559.1'},\n", |
||
| 6344 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002749675.1_ASM274967v1_genomic.fna',\n", |
||
| 6345 | " 'description': 'NZ_CP024411.1 Mesoplasma entomophilum strain TAC chromosome, complete genome',\n", |
||
| 6346 | " 'id': 'NZ_CP024411.1',\n", |
||
| 6347 | " 'name': 'NZ_CP024411.1'},\n", |
||
| 6348 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002446895.1_ASM244689v1_genomic.fna',\n", |
||
| 6349 | " 'description': 'NZ_CP023574.1 Mycobacterium tuberculosis strain CSV4644 chromosome, complete genome',\n", |
||
| 6350 | " 'id': 'NZ_CP023574.1',\n", |
||
| 6351 | " 'name': 'NZ_CP023574.1'},\n", |
||
| 6352 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002302395.1_ASM230239v1_genomic.fna',\n", |
||
| 6353 | " 'description': 'NZ_CP022385.1 Capnocytophaga sputigena strain KC1668 chromosome, complete genome',\n", |
||
| 6354 | " 'id': 'NZ_CP022385.1',\n", |
||
| 6355 | " 'name': 'NZ_CP022385.1'},\n", |
||
| 6356 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000341345.1_ASM34134v1_genomic.fna',\n", |
||
| 6357 | " 'description': 'NC_020302.1 Corynebacterium halotolerans YIM 70093 = DSM 44683, complete genome',\n", |
||
| 6358 | " 'id': 'NC_020302.1',\n", |
||
| 6359 | " 'name': 'NC_020302.1'},\n", |
||
| 6360 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003214365.1_ASM321436v1_genomic.fna',\n", |
||
| 6361 | " 'description': 'NZ_CP029016.1 Candidatus Sulcia muelleri isolate SMMOGMIN chromosome, complete genome',\n", |
||
| 6362 | " 'id': 'NZ_CP029016.1',\n", |
||
| 6363 | " 'name': 'NZ_CP029016.1'},\n", |
||
| 6364 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002286155.1_ASM228615v1_genomic.fna',\n", |
||
| 6365 | " 'description': 'NZ_CP016967.1 Bordetella pertussis strain E025, complete genome',\n", |
||
| 6366 | " 'id': 'NZ_CP016967.1',\n", |
||
| 6367 | " 'name': 'NZ_CP016967.1'},\n", |
||
| 6368 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001702045.2_ASM170204v2_genomic.fna',\n", |
||
| 6369 | " 'description': 'NZ_CP027053.1 Klebsiella pneumoniae strain 2_GR_12 chromosome, complete genome',\n", |
||
| 6370 | " 'id': 'NZ_CP027053.1',\n", |
||
| 6371 | " 'name': 'NZ_CP027053.1'},\n", |
||
| 6372 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000767275.2_ASM76727v3_genomic.fna',\n", |
||
| 6373 | " 'description': 'NZ_CP014334.1 Fervidobacterium islandicum strain AW-1, complete genome',\n", |
||
| 6374 | " 'id': 'NZ_CP014334.1',\n", |
||
| 6375 | " 'name': 'NZ_CP014334.1'},\n", |
||
| 6376 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002741495.1_ASM274149v1_genomic.fna',\n", |
||
| 6377 | " 'description': 'NZ_CP024263.1 Escherichia coli O169:H41 strain F6326-C1 chromosome, complete genome',\n", |
||
| 6378 | " 'id': 'NZ_CP024263.1',\n", |
||
| 6379 | " 'name': 'NZ_CP024263.1'},\n", |
||
| 6380 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635905.1_35910_F01_genomic.fna',\n", |
||
| 6381 | " 'description': 'NZ_LR134193.1 Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1',\n", |
||
| 6382 | " 'id': 'NZ_LR134193.1',\n", |
||
| 6383 | " 'name': 'NZ_LR134193.1'},\n", |
||
| 6384 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001854325.1_ASM185432v1_genomic.fna',\n", |
||
| 6385 | " 'description': 'NZ_CP017754.1 Cupriavidus sp. USMAA1020 chromosome 1, complete sequence',\n", |
||
| 6386 | " 'id': 'NZ_CP017754.1',\n", |
||
| 6387 | " 'name': 'NZ_CP017754.1'},\n", |
||
| 6388 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001854325.1_ASM185432v1_genomic.fna',\n", |
||
| 6389 | " 'description': 'NZ_CP017755.1 Cupriavidus sp. USMAA1020 chromosome 2, complete sequence',\n", |
||
| 6390 | " 'id': 'NZ_CP017755.1',\n", |
||
| 6391 | " 'name': 'NZ_CP017755.1'},\n", |
||
| 6392 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001272795.1_ASM127279v1_genomic.fna',\n", |
||
| 6393 | " 'description': 'NZ_CP010544.1 Mycoplasma pneumoniae 85084, complete genome',\n", |
||
| 6394 | " 'id': 'NZ_CP010544.1',\n", |
||
| 6395 | " 'name': 'NZ_CP010544.1'},\n", |
||
| 6396 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002157835.1_ASM215783v1_genomic.fna',\n", |
||
| 6397 | " 'description': 'NZ_CP020809.1 Mycobacterium dioxanotrophicus strain PH-06 chromosome, complete genome',\n", |
||
| 6398 | " 'id': 'NZ_CP020809.1',\n", |
||
| 6399 | " 'name': 'NZ_CP020809.1'},\n", |
||
| 6400 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900231485.1_JF5861_complete_genome_genomic.fna',\n", |
||
| 6401 | " 'description': 'NZ_LT985475.1 Listeria monocytogenes isolate JF5861 complete genome genome assembly, chromosome: 1',\n", |
||
| 6402 | " 'id': 'NZ_LT985475.1',\n", |
||
| 6403 | " 'name': 'NZ_LT985475.1'},\n", |
||
| 6404 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000203935.1_ASM20393v1_genomic.fna',\n", |
||
| 6405 | " 'description': 'NC_008577.1 Shewanella sp. ANA-3 chromosome 1, complete sequence',\n", |
||
| 6406 | " 'id': 'NC_008577.1',\n", |
||
| 6407 | " 'name': 'NC_008577.1'},\n", |
||
| 6408 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000814165.3_ASM81416v3_genomic.fna',\n", |
||
| 6409 | " 'description': 'NZ_CP010368.1 Acinetobacter nosocomialis strain 6411, complete genome',\n", |
||
| 6410 | " 'id': 'NZ_CP010368.1',\n", |
||
| 6411 | " 'name': 'NZ_CP010368.1'},\n", |
||
| 6412 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003432205.1_ASM343220v1_genomic.fna',\n", |
||
| 6413 | " 'description': 'NZ_CP031814.1 Klebsiella pneumoniae strain KSB1_7F-sc-2280268 chromosome, complete genome',\n", |
||
| 6414 | " 'id': 'NZ_CP031814.1',\n", |
||
| 6415 | " 'name': 'NZ_CP031814.1'},\n", |
||
| 6416 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000340925.1_ASM34092v1_genomic.fna',\n", |
||
| 6417 | " 'description': 'NC_020285.1 Candidatus Kinetoplastibacterium blastocrithidii TCC012E, complete genome',\n", |
||
| 6418 | " 'id': 'NC_020285.1',\n", |
||
| 6419 | " 'name': 'NC_020285.1'},\n", |
||
| 6420 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002025125.1_ASM202512v1_genomic.fna',\n", |
||
| 6421 | " 'description': 'NZ_CP020019.1 Staphylococcus aureus strain 08S00974 chromosome, complete genome',\n", |
||
| 6422 | " 'id': 'NZ_CP020019.1',\n", |
||
| 6423 | " 'name': 'NZ_CP020019.1'},\n", |
||
| 6424 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002846135.1_ASM284613v1_genomic.fna',\n", |
||
| 6425 | " 'description': 'NZ_CP025401.1 Escherichia coli strain MS8345 chromosome, complete genome',\n", |
||
| 6426 | " 'id': 'NZ_CP025401.1',\n", |
||
| 6427 | " 'name': 'NZ_CP025401.1'},\n", |
||
| 6428 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003966625.1_ASM396662v1_genomic.fna',\n", |
||
| 6429 | " 'description': 'NZ_AP018587.1 Staphylococcus caprae JMUB898 DNA, complete genome',\n", |
||
| 6430 | " 'id': 'NZ_AP018587.1',\n", |
||
| 6431 | " 'name': 'NZ_AP018587.1'},\n", |
||
| 6432 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900149385.2_4-29b_chromosome_genomic.fna',\n", |
||
| 6433 | " 'description': 'NZ_LT999999.1 Chlamydia suis isolate 4-29b genome assembly, chromosome: I',\n", |
||
| 6434 | " 'id': 'NZ_LT999999.1',\n", |
||
| 6435 | " 'name': 'NZ_LT999999.1'},\n", |
||
| 6436 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001506545.1_ASM150654v1_genomic.fna',\n", |
||
| 6437 | " 'description': 'NZ_CP010493.1 Campylobacter jejuni strain CJ677CC062, complete genome',\n", |
||
| 6438 | " 'id': 'NZ_CP010493.1',\n", |
||
| 6439 | " 'name': 'NZ_CP010493.1'},\n", |
||
| 6440 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001717955.1_ASM171795v1_genomic.fna',\n", |
||
| 6441 | " 'description': 'NZ_CP014168.1 Sphingomonas panacis strain DCY99, complete genome',\n", |
||
| 6442 | " 'id': 'NZ_CP014168.1',\n", |
||
| 6443 | " 'name': 'NZ_CP014168.1'},\n", |
||
| 6444 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001717955.1_ASM171795v1_genomic.fna',\n", |
||
| 6445 | " 'description': 'NZ_CP014169.1 Sphingomonas panacis strain DCY99 plasmid, complete sequence',\n", |
||
| 6446 | " 'id': 'NZ_CP014169.1',\n", |
||
| 6447 | " 'name': 'NZ_CP014169.1'},\n", |
||
| 6448 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001045995.2_ASM104599v2_genomic.fna',\n", |
||
| 6449 | " 'description': 'NZ_CP007676.1 Staphylococcus aureus strain HUV05, complete genome',\n", |
||
| 6450 | " 'id': 'NZ_CP007676.1',\n", |
||
| 6451 | " 'name': 'NZ_CP007676.1'},\n", |
||
| 6452 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002850015.1_ASM285001v1_genomic.fna',\n", |
||
| 6453 | " 'description': 'NZ_CP016491.1 Lactobacillus pentosus strain BGM48 chromosome, complete genome',\n", |
||
| 6454 | " 'id': 'NZ_CP016491.1',\n", |
||
| 6455 | " 'name': 'NZ_CP016491.1'},\n", |
||
| 6456 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001362335.2_Ty2_genomic.fna',\n", |
||
| 6457 | " 'description': 'NZ_LT904886.1 Salmonella enterica subsp. enterica serovar Typhi strain SGB82 genome assembly, chromosome: 1',\n", |
||
| 6458 | " 'id': 'NZ_LT904886.1',\n", |
||
| 6459 | " 'name': 'NZ_LT904886.1'},\n", |
||
| 6460 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003031835.1_ASM303183v1_genomic.fna',\n", |
||
| 6461 | " 'description': 'NZ_CP020565.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC58 chromosome, complete genome',\n", |
||
| 6462 | " 'id': 'NZ_CP020565.1',\n", |
||
| 6463 | " 'name': 'NZ_CP020565.1'},\n", |
||
| 6464 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002082565.1_ASM208256v1_genomic.fna',\n", |
||
| 6465 | " 'description': 'NZ_CP020562.1 Halomonas sp. GT chromosome, complete genome',\n", |
||
| 6466 | " 'id': 'NZ_CP020562.1',\n", |
||
| 6467 | " 'name': 'NZ_CP020562.1'},\n", |
||
| 6468 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000255615.2_ASM25561v3_genomic.fna',\n", |
||
| 6469 | " 'description': 'NZ_CP013828.1 Ruminiclostridium thermocellum AD2, complete genome',\n", |
||
| 6470 | " 'id': 'NZ_CP013828.1',\n", |
||
| 6471 | " 'name': 'NZ_CP013828.1'},\n", |
||
| 6472 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635465.1_28869_F01_genomic.fna',\n", |
||
| 6473 | " 'description': 'NZ_LR134135.1 Lelliottia amnigena strain NCTC12124 genome assembly, chromosome: 1',\n", |
||
| 6474 | " 'id': 'NZ_LR134135.1',\n", |
||
| 6475 | " 'name': 'NZ_LR134135.1'},\n", |
||
| 6476 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000438825.1_ASM43882v1_genomic.fna',\n", |
||
| 6477 | " 'description': 'NC_021659.1 Serratia plymuthica S13, complete genome',\n", |
||
| 6478 | " 'id': 'NC_021659.1',\n", |
||
| 6479 | " 'name': 'NC_021659.1'},\n", |
||
| 6480 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002501585.1_ASM250158v1_genomic.fna',\n", |
||
| 6481 | " 'description': 'NZ_CP023720.1 Rhodococcus sp. H-CA8f chromosome, complete genome',\n", |
||
| 6482 | " 'id': 'NZ_CP023720.1',\n", |
||
| 6483 | " 'name': 'NZ_CP023720.1'},\n", |
||
| 6484 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002850375.1_ASM285037v1_genomic.fna',\n", |
||
| 6485 | " 'description': 'NZ_CP020618.1 Staphylococcus hominis subsp. hominis strain K1 chromosome, complete genome',\n", |
||
| 6486 | " 'id': 'NZ_CP020618.1',\n", |
||
| 6487 | " 'name': 'NZ_CP020618.1'},\n", |
||
| 6488 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000025385.1_ASM2538v1_genomic.fna',\n", |
||
| 6489 | " 'description': 'NC_017503.1 Mycoplasma gallisepticum str. F, complete genome',\n", |
||
| 6490 | " 'id': 'NC_017503.1',\n", |
||
| 6491 | " 'name': 'NC_017503.1'},\n", |
||
| 6492 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001987895.1_ASM198789v1_genomic.fna',\n", |
||
| 6493 | " 'description': 'NZ_CP011762.1 Bordetella pertussis strain J076, complete genome',\n", |
||
| 6494 | " 'id': 'NZ_CP011762.1',\n", |
||
| 6495 | " 'name': 'NZ_CP011762.1'},\n", |
||
| 6496 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003432345.1_ASM343234v1_genomic.fna',\n", |
||
| 6497 | " 'description': 'NZ_CP031839.1 Staphylococcus aureus strain NX-T55 chromosome, complete genome',\n", |
||
| 6498 | " 'id': 'NZ_CP031839.1',\n", |
||
| 6499 | " 'name': 'NZ_CP031839.1'},\n", |
||
| 6500 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000195435.3_ASM19543v4_genomic.fna',\n", |
||
| 6501 | " 'description': 'NC_021830.2 Listeria monocytogenes J1816, complete genome',\n", |
||
| 6502 | " 'id': 'NC_021830.2',\n", |
||
| 6503 | " 'name': 'NC_021830.2'},\n", |
||
| 6504 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002310435.1_ASM231043v1_genomic.fna',\n", |
||
| 6505 | " 'description': 'NZ_CP023390.1 Staphylococcus aureus subsp. aureus str. Newman chromosome, complete genome',\n", |
||
| 6506 | " 'id': 'NZ_CP023390.1',\n", |
||
| 6507 | " 'name': 'NZ_CP023390.1'},\n", |
||
| 6508 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000755705.1_ASM75570v1_genomic.fna',\n", |
||
| 6509 | " 'description': 'NZ_CP009415.1 Candidatus Izimaplasma sp. HR1 chromosome, complete genome',\n", |
||
| 6510 | " 'id': 'NZ_CP009415.1',\n", |
||
| 6511 | " 'name': 'NZ_CP009415.1'},\n", |
||
| 6512 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000756165.1_ASM75616v1_genomic.fna',\n", |
||
| 6513 | " 'description': 'NZ_CP008780.1 Burkholderia pseudomallei strain MSHR1655 chromosome 1, complete sequence',\n", |
||
| 6514 | " 'id': 'NZ_CP008780.1',\n", |
||
| 6515 | " 'name': 'NZ_CP008780.1'},\n", |
||
| 6516 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000756165.1_ASM75616v1_genomic.fna',\n", |
||
| 6517 | " 'description': 'NZ_CP008779.1 Burkholderia pseudomallei strain MSHR1655 chromosome 2, complete sequence',\n", |
||
| 6518 | " 'id': 'NZ_CP008779.1',\n", |
||
| 6519 | " 'name': 'NZ_CP008779.1'},\n", |
||
| 6520 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001272655.2_ASM127265v2_genomic.fna',\n", |
||
| 6521 | " 'description': 'NZ_CP011512.1 Paenibacillus peoriae strain HS311, complete genome',\n", |
||
| 6522 | " 'id': 'NZ_CP011512.1',\n", |
||
| 6523 | " 'name': 'NZ_CP011512.1'},\n", |
||
| 6524 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001272655.2_ASM127265v2_genomic.fna',\n", |
||
| 6525 | " 'description': 'NZ_CP011513.1 Paenibacillus peoriae strain HS311 plasmid, complete sequence',\n", |
||
| 6526 | " 'id': 'NZ_CP011513.1',\n", |
||
| 6527 | " 'name': 'NZ_CP011513.1'},\n", |
||
| 6528 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900618255.1_paerg002_genomic.fna',\n", |
||
| 6529 | " 'description': 'NZ_LR130527.1 Pseudomonas aeruginosa isolate paerg002 genome assembly, chromosome: 0',\n", |
||
| 6530 | " 'id': 'NZ_LR130527.1',\n", |
||
| 6531 | " 'name': 'NZ_LR130527.1'},\n", |
||
| 6532 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000455605.1_GPTSA100-9_genomic.fna',\n", |
||
| 6533 | " 'description': 'NC_017025.1 Flavobacterium indicum GPTSA100-9 complete genome',\n", |
||
| 6534 | " 'id': 'NC_017025.1',\n", |
||
| 6535 | " 'name': 'NC_017025.1'},\n", |
||
| 6536 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000430165.1_ASM43016v1_genomic.fna',\n", |
||
| 6537 | " 'description': 'NC_021820.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736, complete sequence',\n", |
||
| 6538 | " 'id': 'NC_021820.1',\n", |
||
| 6539 | " 'name': 'NC_021820.1'},\n", |
||
| 6540 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001281445.1_ASM128144v1_genomic.fna',\n", |
||
| 6541 | " 'description': 'NZ_CP010818.1 Corynebacterium ulcerans strain 131001, complete genome',\n", |
||
| 6542 | " 'id': 'NZ_CP010818.1',\n", |
||
| 6543 | " 'name': 'NZ_CP010818.1'},\n", |
||
| 6544 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001664425.1_ASM166442v1_genomic.fna',\n", |
||
| 6545 | " 'description': 'NZ_CP013557.1 Rhizobium phaseoli strain N841, complete genome',\n", |
||
| 6546 | " 'id': 'NZ_CP013557.1',\n", |
||
| 6547 | " 'name': 'NZ_CP013557.1'},\n", |
||
| 6548 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004135145.1_ASM413514v1_genomic.fna',\n", |
||
| 6549 | " 'description': 'NZ_CP035484.1 Chlamydia trachomatis strain tet9 chromosome, complete genome',\n", |
||
| 6550 | " 'id': 'NZ_CP035484.1',\n", |
||
| 6551 | " 'name': 'NZ_CP035484.1'},\n", |
||
| 6552 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004154065.1_ASM415406v1_genomic.fna',\n", |
||
| 6553 | " 'description': 'NZ_CP031619.1 Streptococcus pyogenes strain MGAS29284 chromosome, complete genome',\n", |
||
| 6554 | " 'id': 'NZ_CP031619.1',\n", |
||
| 6555 | " 'name': 'NZ_CP031619.1'},\n", |
||
| 6556 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639505.1_E7356_hybrid_assembly_genomic.fna',\n", |
||
| 6557 | " 'description': 'NZ_LR135339.1 Enterococcus faecium isolate E7356 genome assembly, chromosome: 1',\n", |
||
| 6558 | " 'id': 'NZ_LR135339.1',\n", |
||
| 6559 | " 'name': 'NZ_LR135339.1'},\n", |
||
| 6560 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639505.1_E7356_hybrid_assembly_genomic.fna',\n", |
||
| 6561 | " 'description': 'NZ_LR135340.1 Enterococcus faecium isolate E7356 genome assembly, plasmid: 2',\n", |
||
| 6562 | " 'id': 'NZ_LR135340.1',\n", |
||
| 6563 | " 'name': 'NZ_LR135340.1'},\n", |
||
| 6564 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639505.1_E7356_hybrid_assembly_genomic.fna',\n", |
||
| 6565 | " 'description': 'NZ_LR135341.1 Enterococcus faecium isolate E7356 genome assembly, plasmid: 3',\n", |
||
| 6566 | " 'id': 'NZ_LR135341.1',\n", |
||
| 6567 | " 'name': 'NZ_LR135341.1'},\n", |
||
| 6568 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639505.1_E7356_hybrid_assembly_genomic.fna',\n", |
||
| 6569 | " 'description': 'NZ_LR135342.1 Enterococcus faecium isolate E7356 genome assembly, plasmid: 4',\n", |
||
| 6570 | " 'id': 'NZ_LR135342.1',\n", |
||
| 6571 | " 'name': 'NZ_LR135342.1'},\n", |
||
| 6572 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639505.1_E7356_hybrid_assembly_genomic.fna',\n", |
||
| 6573 | " 'description': 'NZ_LR135343.1 Enterococcus faecium isolate E7356 genome assembly, plasmid: 5',\n", |
||
| 6574 | " 'id': 'NZ_LR135343.1',\n", |
||
| 6575 | " 'name': 'NZ_LR135343.1'},\n", |
||
| 6576 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000253255.1_ASM25325v1_genomic.fna',\n", |
||
| 6577 | " 'description': 'NC_015580.1 Novosphingobium sp. PP1Y main chromosome, complete replicon',\n", |
||
| 6578 | " 'id': 'NC_015580.1',\n", |
||
| 6579 | " 'name': 'NC_015580.1'},\n", |
||
| 6580 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000253255.1_ASM25325v1_genomic.fna',\n", |
||
| 6581 | " 'description': 'NC_015579.1 Novosphingobium sp. PP1Y Lpl large plasmid, complete replicon',\n", |
||
| 6582 | " 'id': 'NC_015579.1',\n", |
||
| 6583 | " 'name': 'NC_015579.1'},\n", |
||
| 6584 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000253255.1_ASM25325v1_genomic.fna',\n", |
||
| 6585 | " 'description': 'NC_015583.1 Novosphingobium sp. PP1Y Mpl megaplasmid, complete replicon',\n", |
||
| 6586 | " 'id': 'NC_015583.1',\n", |
||
| 6587 | " 'name': 'NC_015583.1'},\n", |
||
| 6588 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000253255.1_ASM25325v1_genomic.fna',\n", |
||
| 6589 | " 'description': 'NC_015582.1 Novosphingobium sp. PP1Y Spl small plasmid, complete replicon',\n", |
||
| 6590 | " 'id': 'NC_015582.1',\n", |
||
| 6591 | " 'name': 'NC_015582.1'},\n", |
||
| 6592 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001865395.1_ASM186539v1_genomic.fna',\n", |
||
| 6593 | " 'description': 'NZ_CP017862.1 Campylobacter jejuni strain FJ3124 chromosome, complete genome',\n", |
||
| 6594 | " 'id': 'NZ_CP017862.1',\n", |
||
| 6595 | " 'name': 'NZ_CP017862.1'},\n", |
||
| 6596 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000241585.2_ASM24158v3_genomic.fna',\n", |
||
| 6597 | " 'description': 'NZ_AP014881.1 Acetobacter pasteurianus NBRC 101655 DNA, complete genome',\n", |
||
| 6598 | " 'id': 'NZ_AP014881.1',\n", |
||
| 6599 | " 'name': 'NZ_AP014881.1'},\n", |
||
| 6600 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001717685.1_ASM171768v3_genomic.fna',\n", |
||
| 6601 | " 'description': 'NZ_CP016858.1 Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome',\n", |
||
| 6602 | " 'id': 'NZ_CP016858.1',\n", |
||
| 6603 | " 'name': 'NZ_CP016858.1'},\n", |
||
| 6604 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000014645.1_ASM1464v1_genomic.fna',\n", |
||
| 6605 | " 'description': 'NC_008601.1 Francisella tularensis subsp. novicida U112, complete genome',\n", |
||
| 6606 | " 'id': 'NC_008601.1',\n", |
||
| 6607 | " 'name': 'NC_008601.1'},\n", |
||
| 6608 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003971545.1_ASM397154v1_genomic.fna',\n", |
||
| 6609 | " 'description': 'NZ_CP033905.1 Trueperella pyogenes strain TP4 chromosome, complete genome',\n", |
||
| 6610 | " 'id': 'NZ_CP033905.1',\n", |
||
| 6611 | " 'name': 'NZ_CP033905.1'},\n", |
||
| 6612 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000448685.2_ASM44868v2_genomic.fna',\n", |
||
| 6613 | " 'description': 'NZ_CP013216.1 Streptococcus salivarius strain HSISS4, complete genome',\n", |
||
| 6614 | " 'id': 'NZ_CP013216.1',\n", |
||
| 6615 | " 'name': 'NZ_CP013216.1'},\n", |
||
| 6616 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635895.1_35910_C01_genomic.fna',\n", |
||
| 6617 | " 'description': 'NZ_LR134191.1 Escherichia coli strain NCTC5934 genome assembly, chromosome: 1',\n", |
||
| 6618 | " 'id': 'NZ_LR134191.1',\n", |
||
| 6619 | " 'name': 'NZ_LR134191.1'},\n", |
||
| 6620 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002776885.1_ASM277688v1_genomic.fna',\n", |
||
| 6621 | " 'description': 'NZ_CP017733.1 Chlamydia trachomatis strain SQ24 chromosome, complete genome',\n", |
||
| 6622 | " 'id': 'NZ_CP017733.1',\n", |
||
| 6623 | " 'name': 'NZ_CP017733.1'},\n", |
||
| 6624 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001974985.1_ASM197498v1_genomic.fna',\n", |
||
| 6625 | " 'description': 'NZ_CP018762.1 Microbacterium aurum strain KACC 15219 chromosome, complete genome',\n", |
||
| 6626 | " 'id': 'NZ_CP018762.1',\n", |
||
| 6627 | " 'name': 'NZ_CP018762.1'},\n", |
||
| 6628 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900638675.1_58225_E01_genomic.fna',\n", |
||
| 6629 | " 'description': 'NZ_LR134534.1 Campylobacter insulaenigrae strain NCTC12928 genome assembly, chromosome: 1',\n", |
||
| 6630 | " 'id': 'NZ_LR134534.1',\n", |
||
| 6631 | " 'name': 'NZ_LR134534.1'},\n", |
||
| 6632 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001298465.1_ASM129846v1_genomic.fna',\n", |
||
| 6633 | " 'description': 'NZ_CP012541.1 Campylobacter concisus strain ATCC 33237 chromosome, complete genome',\n", |
||
| 6634 | " 'id': 'NZ_CP012541.1',\n", |
||
| 6635 | " 'name': 'NZ_CP012541.1'},\n", |
||
| 6636 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000829215.1_ASM82921v1_genomic.fna',\n", |
||
| 6637 | " 'description': 'NZ_AP014524.1 Vibrio cholerae MS6 DNA, complete genome, chromosome 1',\n", |
||
| 6638 | " 'id': 'NZ_AP014524.1',\n", |
||
| 6639 | " 'name': 'NZ_AP014524.1'},\n", |
||
| 6640 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000829215.1_ASM82921v1_genomic.fna',\n", |
||
| 6641 | " 'description': 'NZ_AP014525.1 Vibrio cholerae MS6 DNA, complete genome, chromosome 2',\n", |
||
| 6642 | " 'id': 'NZ_AP014525.1',\n", |
||
| 6643 | " 'name': 'NZ_AP014525.1'},\n", |
||
| 6644 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001683275.1_ASM168327v1_genomic.fna',\n", |
||
| 6645 | " 'description': 'NZ_CP012727.1 Bacillus anthracis strain PR09-4, complete genome',\n", |
||
| 6646 | " 'id': 'NZ_CP012727.1',\n", |
||
| 6647 | " 'name': 'NZ_CP012727.1'},\n", |
||
| 6648 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000816145.1_ASM81614v1_genomic.fna',\n", |
||
| 6649 | " 'description': 'NZ_CP007141.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 chromosome, complete genome',\n", |
||
| 6650 | " 'id': 'NZ_CP007141.1',\n", |
||
| 6651 | " 'name': 'NZ_CP007141.1'},\n", |
||
| 6652 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003711065.1_ASM371106v1_genomic.fna',\n", |
||
| 6653 | " 'description': 'NZ_CP033405.1 Klebsiella pneumoniae strain WCHKP115069 chromosome, complete genome',\n", |
||
| 6654 | " 'id': 'NZ_CP033405.1',\n", |
||
| 6655 | " 'name': 'NZ_CP033405.1'},\n", |
||
| 6656 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002795825.1_ASM279582v1_genomic.fna',\n", |
||
| 6657 | " 'description': 'NZ_CP018800.1 Mariprofundus ferrinatatus strain CP-8 chromosome, complete genome',\n", |
||
| 6658 | " 'id': 'NZ_CP018800.1',\n", |
||
| 6659 | " 'name': 'NZ_CP018800.1'},\n", |
||
| 6660 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900637325.1_50569_E01_genomic.fna',\n", |
||
| 6661 | " 'description': 'NZ_LR134366.1 Wolinella succinogenes strain NCTC11488 genome assembly, chromosome: 1',\n", |
||
| 6662 | " 'id': 'NZ_LR134366.1',\n", |
||
| 6663 | " 'name': 'NZ_LR134366.1'},\n", |
||
| 6664 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003287245.1_ASM328724v1_genomic.fna',\n", |
||
| 6665 | " 'description': 'NZ_CP029371.1 Escherichia coli strain C chromosome, complete genome',\n", |
||
| 6666 | " 'id': 'NZ_CP029371.1',\n", |
||
| 6667 | " 'name': 'NZ_CP029371.1'},\n", |
||
| 6668 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001038645.1_ASM103864v1_genomic.fna',\n", |
||
| 6669 | " 'description': 'NZ_CP011854.1 Pseudomonas stutzeri strain SLG510A3-8, complete genome',\n", |
||
| 6670 | " 'id': 'NZ_CP011854.1',\n", |
||
| 6671 | " 'name': 'NZ_CP011854.1'},\n", |
||
| 6672 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004355365.1_ASM435536v1_genomic.fna',\n", |
||
| 6673 | " 'description': 'NZ_CP033174.1 Xanthomonas oryzae pv. oryzae strain CFBP7340 chromosome, complete genome',\n", |
||
| 6674 | " 'id': 'NZ_CP033174.1',\n", |
||
| 6675 | " 'name': 'NZ_CP033174.1'},\n", |
||
| 6676 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000022085.1_ASM2208v1_genomic.fna',\n", |
||
| 6677 | " 'description': 'NC_011894.1 Methylobacterium nodulans ORS 2060, complete genome',\n", |
||
| 6678 | " 'id': 'NC_011894.1',\n", |
||
| 6679 | " 'name': 'NC_011894.1'},\n", |
||
| 6680 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000014785.1_ASM1478v1_genomic.fna',\n", |
||
| 6681 | " 'description': 'NC_008340.1 Alkalilimnicola ehrlichii MLHE-1, complete genome',\n", |
||
| 6682 | " 'id': 'NC_008340.1',\n", |
||
| 6683 | " 'name': 'NC_008340.1'},\n", |
||
| 6684 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002865585.1_ASM286558v1_genomic.fna',\n", |
||
| 6685 | " 'description': 'NZ_CP025581.1 Nocardioides sp. 78 chromosome, complete genome',\n", |
||
| 6686 | " 'id': 'NZ_CP025581.1',\n", |
||
| 6687 | " 'name': 'NZ_CP025581.1'},\n", |
||
| 6688 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002024865.1_ASM202486v1_genomic.fna',\n", |
||
| 6689 | " 'description': 'NZ_CP019777.1 Escherichia coli NU14 chromosome, complete genome',\n", |
||
| 6690 | " 'id': 'NZ_CP019777.1',\n", |
||
| 6691 | " 'name': 'NZ_CP019777.1'},\n", |
||
| 6692 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000250925.1_ASM25092v1_genomic.fna',\n", |
||
| 6693 | " 'description': 'NC_017053.1 Streptococcus pyogenes MGAS1882, complete genome',\n", |
||
| 6694 | " 'id': 'NC_017053.1',\n", |
||
| 6695 | " 'name': 'NC_017053.1'},\n", |
||
| 6696 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000317025.1_ASM31702v1_genomic.fna',\n", |
||
| 6697 | " 'description': 'NC_019689.1 Pleurocapsa sp. PCC 7327, complete genome',\n", |
||
| 6698 | " 'id': 'NC_019689.1',\n", |
||
| 6699 | " 'name': 'NC_019689.1'},\n", |
||
| 6700 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000740215.1_ASM74021v1_genomic.fna',\n", |
||
| 6701 | " 'description': 'NZ_CP007709.1 Brucella abortus bv. 6 str. 870 chromosome 1, complete sequence',\n", |
||
| 6702 | " 'id': 'NZ_CP007709.1',\n", |
||
| 6703 | " 'name': 'NZ_CP007709.1'},\n", |
||
| 6704 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000740215.1_ASM74021v1_genomic.fna',\n", |
||
| 6705 | " 'description': 'NZ_CP007710.1 Brucella abortus bv. 6 str. 870 chromosome 2, complete sequence',\n", |
||
| 6706 | " 'id': 'NZ_CP007710.1',\n", |
||
| 6707 | " 'name': 'NZ_CP007710.1'},\n", |
||
| 6708 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003367705.1_ASM336770v1_genomic.fna',\n", |
||
| 6709 | " 'description': 'NZ_CP031425.1 Microbacterium foliorum strain NRRL B-24224 chromosome, complete genome',\n", |
||
| 6710 | " 'id': 'NZ_CP031425.1',\n", |
||
| 6711 | " 'name': 'NZ_CP031425.1'},\n", |
||
| 6712 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236375.1_Bru_genome9_genomic.fna',\n", |
||
| 6713 | " 'description': 'NZ_LT962947.1 Brucella melitensis isolate 1 genome assembly, chromosome: 1',\n", |
||
| 6714 | " 'id': 'NZ_LT962947.1',\n", |
||
| 6715 | " 'name': 'NZ_LT962947.1'},\n", |
||
| 6716 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236375.1_Bru_genome9_genomic.fna',\n", |
||
| 6717 | " 'description': 'NZ_LT962948.1 Brucella melitensis isolate 1 genome assembly, chromosome: 2',\n", |
||
| 6718 | " 'id': 'NZ_LT962948.1',\n", |
||
| 6719 | " 'name': 'NZ_LT962948.1'},\n", |
||
| 6720 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000203915.1_ASM20391v1_genomic.fna',\n", |
||
| 6721 | " 'description': 'NC_008390.1 Burkholderia ambifaria AMMD chromosome 1, complete sequence',\n", |
||
| 6722 | " 'id': 'NC_008390.1',\n", |
||
| 6723 | " 'name': 'NC_008390.1'},\n", |
||
| 6724 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000203915.1_ASM20391v1_genomic.fna',\n", |
||
| 6725 | " 'description': 'NC_008391.1 Burkholderia ambifaria AMMD chromosome 2, complete sequence',\n", |
||
| 6726 | " 'id': 'NC_008391.1',\n", |
||
| 6727 | " 'name': 'NC_008391.1'},\n", |
||
| 6728 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000203915.1_ASM20391v1_genomic.fna',\n", |
||
| 6729 | " 'description': 'NC_008392.1 Burkholderia ambifaria AMMD chromosome 3, complete sequence',\n", |
||
| 6730 | " 'id': 'NC_008392.1',\n", |
||
| 6731 | " 'name': 'NC_008392.1'},\n", |
||
| 6732 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000203915.1_ASM20391v1_genomic.fna',\n", |
||
| 6733 | " 'description': 'NC_008385.1 Burkholderia ambifaria AMMD plasmid1, complete sequence',\n", |
||
| 6734 | " 'id': 'NC_008385.1',\n", |
||
| 6735 | " 'name': 'NC_008385.1'},\n", |
||
| 6736 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000203835.1_ASM20383v1_genomic.fna',\n", |
||
| 6737 | " 'description': 'NC_003888.3 Streptomyces coelicolor A3(2) chromosome, complete genome',\n", |
||
| 6738 | " 'id': 'NC_003888.3',\n", |
||
| 6739 | " 'name': 'NC_003888.3'},\n", |
||
| 6740 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004009335.1_ASM400933v1_genomic.fna',\n", |
||
| 6741 | " 'description': 'NZ_CP025363.1 Bordetella pertussis strain H902 chromosome, complete genome',\n", |
||
| 6742 | " 'id': 'NZ_CP025363.1',\n", |
||
| 6743 | " 'name': 'NZ_CP025363.1'},\n", |
||
| 6744 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003665215.1_ASM366521v1_genomic.fna',\n", |
||
| 6745 | " 'description': 'NZ_CP032855.1 Bacillus subtilis subsp. subtilis strain PJ-7 chromosome, complete genome',\n", |
||
| 6746 | " 'id': 'NZ_CP032855.1',\n", |
||
| 6747 | " 'name': 'NZ_CP032855.1'},\n", |
||
| 6748 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000485905.1_ASM48590v1_genomic.fna',\n", |
||
| 6749 | " 'description': 'NC_022664.1 Spiribacter curvatus strain UAH-SP71, complete genome',\n", |
||
| 6750 | " 'id': 'NC_022664.1',\n", |
||
| 6751 | " 'name': 'NC_022664.1'},\n", |
||
| 6752 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002285755.1_ASM228575v1_genomic.fna',\n", |
||
| 6753 | " 'description': 'NZ_CP021288.1 Escherichia coli strain PA45B chromosome, complete genome',\n", |
||
| 6754 | " 'id': 'NZ_CP021288.1',\n", |
||
| 6755 | " 'name': 'NZ_CP021288.1'},\n", |
||
| 6756 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001676745.1_ASM167674v1_genomic.fna',\n", |
||
| 6757 | " 'description': 'NZ_CP016171.1 Bordetella bronchialis strain AU17976, complete genome',\n", |
||
| 6758 | " 'id': 'NZ_CP016171.1',\n", |
||
| 6759 | " 'name': 'NZ_CP016171.1'},\n", |
||
| 6760 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000233915.3_ASM23391v4_genomic.fna',\n", |
||
| 6761 | " 'description': 'NC_016147.2 Pseudoxanthomonas spadix BD-a59, complete genome',\n", |
||
| 6762 | " 'id': 'NC_016147.2',\n", |
||
| 6763 | " 'name': 'NC_016147.2'},\n", |
||
| 6764 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000253375.1_ASM25337v1_genomic.fna',\n", |
||
| 6765 | " 'description': 'NC_015848.1 Mycobacterium canettii CIPT 140010059 complete genome',\n", |
||
| 6766 | " 'id': 'NC_015848.1',\n", |
||
| 6767 | " 'name': 'NC_015848.1'},\n", |
||
| 6768 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001050395.1_ASM105039v1_genomic.fna',\n", |
||
| 6769 | " 'description': 'NZ_CP012044.1 Mycobacterium abscessus UC22, complete genome',\n", |
||
| 6770 | " 'id': 'NZ_CP012044.1',\n", |
||
| 6771 | " 'name': 'NZ_CP012044.1'},\n", |
||
| 6772 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003687415.1_ASM368741v1_genomic.fna',\n", |
||
| 6773 | " 'description': 'NZ_CP033081.1 Glutamicibacter nicotianae strain OTC-16 chromosome, complete genome',\n", |
||
| 6774 | " 'id': 'NZ_CP033081.1',\n", |
||
| 6775 | " 'name': 'NZ_CP033081.1'},\n", |
||
| 6776 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236335.1_Bru_genome7_genomic.fna',\n", |
||
| 6777 | " 'description': 'NZ_LT962928.1 Brucella melitensis isolate 1 genome assembly, chromosome: 1',\n", |
||
| 6778 | " 'id': 'NZ_LT962928.1',\n", |
||
| 6779 | " 'name': 'NZ_LT962928.1'},\n", |
||
| 6780 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236335.1_Bru_genome7_genomic.fna',\n", |
||
| 6781 | " 'description': 'NZ_LT962929.1 Brucella melitensis isolate 1 genome assembly, chromosome: 2',\n", |
||
| 6782 | " 'id': 'NZ_LT962929.1',\n", |
||
| 6783 | " 'name': 'NZ_LT962929.1'},\n", |
||
| 6784 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003018495.1_ASM301849v1_genomic.fna',\n", |
||
| 6785 | " 'description': 'NZ_CP027552.1 Escherichia coli strain 2015C-4498 chromosome, complete genome',\n", |
||
| 6786 | " 'id': 'NZ_CP027552.1',\n", |
||
| 6787 | " 'name': 'NZ_CP027552.1'},\n", |
||
| 6788 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000974885.1_ASM97488v1_genomic.fna',\n", |
||
| 6789 | " 'description': 'NZ_CP010445.1 Escherichia coli K-12 strain ER3435, complete genome',\n", |
||
| 6790 | " 'id': 'NZ_CP010445.1',\n", |
||
| 6791 | " 'name': 'NZ_CP010445.1'},\n", |
||
| 6792 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001702095.1_ASM170209v1_genomic.fna',\n", |
||
| 6793 | " 'description': 'NZ_CP016827.1 Lactobacillus helveticus strain D76, complete genome',\n", |
||
| 6794 | " 'id': 'NZ_CP016827.1',\n", |
||
| 6795 | " 'name': 'NZ_CP016827.1'},\n", |
||
| 6796 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000270245.1_ASM27024v1_genomic.fna',\n", |
||
| 6797 | " 'description': 'NC_015635.1 Microlunatus phosphovorus NM-1 DNA, complete genome',\n", |
||
| 6798 | " 'id': 'NC_015635.1',\n", |
||
| 6799 | " 'name': 'NC_015635.1'},\n", |
||
| 6800 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003718415.1_ASM371841v1_genomic.fna',\n", |
||
| 6801 | " 'description': 'NZ_CP029962.1 Salmonella enterica subsp. enterica serovar Typhi strain 343078_228140 chromosome, complete genome',\n", |
||
| 6802 | " 'id': 'NZ_CP029962.1',\n", |
||
| 6803 | " 'name': 'NZ_CP029962.1'},\n", |
||
| 6804 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660635.1_56793_F01-3_genomic.fna',\n", |
||
| 6805 | " 'description': 'NZ_LR215031.1 Mycoplasma gallopavonis strain NCTC10186 genome assembly, chromosome: 1',\n", |
||
| 6806 | " 'id': 'NZ_LR215031.1',\n", |
||
| 6807 | " 'name': 'NZ_LR215031.1'},\n", |
||
| 6808 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660635.1_56793_F01-3_genomic.fna',\n", |
||
| 6809 | " 'description': 'NZ_LR215032.1 Mycoplasma gallopavonis strain NCTC10186 genome assembly, plasmid: 2',\n", |
||
| 6810 | " 'id': 'NZ_LR215032.1',\n", |
||
| 6811 | " 'name': 'NZ_LR215032.1'},\n", |
||
| 6812 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660635.1_56793_F01-3_genomic.fna',\n", |
||
| 6813 | " 'description': 'NZ_LR215033.1 Mycoplasma gallopavonis strain NCTC10186 genome assembly, plasmid: 3',\n", |
||
| 6814 | " 'id': 'NZ_LR215033.1',\n", |
||
| 6815 | " 'name': 'NZ_LR215033.1'},\n", |
||
| 6816 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900660635.1_56793_F01-3_genomic.fna',\n", |
||
| 6817 | " 'description': 'NZ_LR215034.1 Mycoplasma gallopavonis strain NCTC10186 genome assembly, plasmid: 4',\n", |
||
| 6818 | " 'id': 'NZ_LR215034.1',\n", |
||
| 6819 | " 'name': 'NZ_LR215034.1'},\n", |
||
| 6820 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001941385.1_ASM194138v1_genomic.fna',\n", |
||
| 6821 | " 'description': 'NZ_CP007389.1 Thermosipho melanesiensis strain 431, complete genome',\n", |
||
| 6822 | " 'id': 'NZ_CP007389.1',\n", |
||
| 6823 | " 'name': 'NZ_CP007389.1'},\n", |
||
| 6824 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001952875.1_ASM195287v1_genomic.fna',\n", |
||
| 6825 | " 'description': 'NZ_CP015382.1 Klebsiella pneumoniae strain CN1, complete genome',\n", |
||
| 6826 | " 'id': 'NZ_CP015382.1',\n", |
||
| 6827 | " 'name': 'NZ_CP015382.1'},\n", |
||
| 6828 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004124195.1_ASM412419v1_genomic.fna',\n", |
||
| 6829 | " 'description': 'NZ_CP033350.1 Salmonella enterica subsp. enterica strain CFSA231 chromosome, complete genome',\n", |
||
| 6830 | " 'id': 'NZ_CP033350.1',\n", |
||
| 6831 | " 'name': 'NZ_CP033350.1'},\n", |
||
| 6832 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001481675.1_ASM148167v1_genomic.fna',\n", |
||
| 6833 | " 'description': 'NZ_CP013697.1 Corynebacterium pseudotuberculosis strain MEX25, complete genome',\n", |
||
| 6834 | " 'id': 'NZ_CP013697.1',\n", |
||
| 6835 | " 'name': 'NZ_CP013697.1'},\n", |
||
| 6836 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000013685.1_ASM1368v1_genomic.fna',\n", |
||
| 6837 | " 'description': 'NC_007958.1 Rhodopseudomonas palustris BisB5, complete genome',\n", |
||
| 6838 | " 'id': 'NC_007958.1',\n", |
||
| 6839 | " 'name': 'NC_007958.1'},\n", |
||
| 6840 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003006175.1_ASM300617v1_genomic.fna',\n", |
||
| 6841 | " 'description': 'NZ_CP024429.1 Klebsiella pneumoniae strain DA48896 chromosome, complete genome',\n", |
||
| 6842 | " 'id': 'NZ_CP024429.1',\n", |
||
| 6843 | " 'name': 'NZ_CP024429.1'},\n", |
||
| 6844 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639575.1_E8014_hybrid_assembly_genomic.fna',\n", |
||
| 6845 | " 'description': 'NZ_LR135351.1 Enterococcus faecium isolate E8014 genome assembly, chromosome: 1',\n", |
||
| 6846 | " 'id': 'NZ_LR135351.1',\n", |
||
| 6847 | " 'name': 'NZ_LR135351.1'},\n", |
||
| 6848 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639575.1_E8014_hybrid_assembly_genomic.fna',\n", |
||
| 6849 | " 'description': 'NZ_LR135352.1 Enterococcus faecium isolate E8014 genome assembly, plasmid: 2',\n", |
||
| 6850 | " 'id': 'NZ_LR135352.1',\n", |
||
| 6851 | " 'name': 'NZ_LR135352.1'},\n", |
||
| 6852 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639575.1_E8014_hybrid_assembly_genomic.fna',\n", |
||
| 6853 | " 'description': 'NZ_LR135353.1 Enterococcus faecium isolate E8014 genome assembly, plasmid: 3',\n", |
||
| 6854 | " 'id': 'NZ_LR135353.1',\n", |
||
| 6855 | " 'name': 'NZ_LR135353.1'},\n", |
||
| 6856 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639575.1_E8014_hybrid_assembly_genomic.fna',\n", |
||
| 6857 | " 'description': 'NZ_LR135354.1 Enterococcus faecium isolate E8014 genome assembly, plasmid: 4',\n", |
||
| 6858 | " 'id': 'NZ_LR135354.1',\n", |
||
| 6859 | " 'name': 'NZ_LR135354.1'},\n", |
||
| 6860 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639575.1_E8014_hybrid_assembly_genomic.fna',\n", |
||
| 6861 | " 'description': 'NZ_LR135355.1 Enterococcus faecium isolate E8014 genome assembly, plasmid: 5',\n", |
||
| 6862 | " 'id': 'NZ_LR135355.1',\n", |
||
| 6863 | " 'name': 'NZ_LR135355.1'},\n", |
||
| 6864 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639575.1_E8014_hybrid_assembly_genomic.fna',\n", |
||
| 6865 | " 'description': 'NZ_LR135356.1 Enterococcus faecium isolate E8014 genome assembly, plasmid: 6',\n", |
||
| 6866 | " 'id': 'NZ_LR135356.1',\n", |
||
| 6867 | " 'name': 'NZ_LR135356.1'},\n", |
||
| 6868 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000315955.1_ASM31595v1_genomic.fna',\n", |
||
| 6869 | " 'description': 'NC_019560.1 Helicobacter pylori Aklavik117, complete genome',\n", |
||
| 6870 | " 'id': 'NC_019560.1',\n", |
||
| 6871 | " 'name': 'NC_019560.1'},\n", |
||
| 6872 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002386305.1_ASM238630v1_genomic.fna',\n", |
||
| 6873 | " 'description': 'NZ_CP023505.1 Morganella morganii strain FDAARGOS_365 chromosome, complete genome',\n", |
||
| 6874 | " 'id': 'NZ_CP023505.1',\n", |
||
| 6875 | " 'name': 'NZ_CP023505.1'},\n", |
||
| 6876 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003148355.1_ASM314835v2_genomic.fna',\n", |
||
| 6877 | " 'description': 'NZ_CP029461.1 Bacillus subtilis strain QB61 chromosome, complete genome',\n", |
||
| 6878 | " 'id': 'NZ_CP029461.1',\n", |
||
| 6879 | " 'name': 'NZ_CP029461.1'},\n", |
||
| 6880 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002859505.1_ASM285950v1_genomic.fna',\n", |
||
| 6881 | " 'description': 'NZ_CP015571.1 Pasteurella multocida strain USDA-ARS-USMARC-60214 chromosome, complete genome',\n", |
||
| 6882 | " 'id': 'NZ_CP015571.1',\n", |
||
| 6883 | " 'name': 'NZ_CP015571.1'},\n", |
||
| 6884 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001941925.1_ASM194192v1_genomic.fna',\n", |
||
| 6885 | " 'description': 'NZ_CP018935.1 Bacillus cereus strain JEM-2 chromosome, complete genome',\n", |
||
| 6886 | " 'id': 'NZ_CP018935.1',\n", |
||
| 6887 | " 'name': 'NZ_CP018935.1'},\n", |
||
| 6888 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003286955.1_ASM328695v1_genomic.fna',\n", |
||
| 6889 | " 'description': 'NZ_CP022294.1 Lactobacillus plantarum strain DSR_M2 chromosome, complete genome',\n", |
||
| 6890 | " 'id': 'NZ_CP022294.1',\n", |
||
| 6891 | " 'name': 'NZ_CP022294.1'},\n", |
||
| 6892 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001686485.1_ASM168648v1_genomic.fna',\n", |
||
| 6893 | " 'description': 'NZ_CP015764.1 Bordetella pertussis strain VA-198, complete genome',\n", |
||
| 6894 | " 'id': 'NZ_CP015764.1',\n", |
||
| 6895 | " 'name': 'NZ_CP015764.1'},\n", |
||
| 6896 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900475155.1_41975_A01_genomic.fna',\n", |
||
| 6897 | " 'description': 'NZ_LS483359.1 Streptococcus pyogenes strain NCTC12068 genome assembly, chromosome: 1',\n", |
||
| 6898 | " 'id': 'NZ_LS483359.1',\n", |
||
| 6899 | " 'name': 'NZ_LS483359.1'},\n", |
||
| 6900 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000189515.1_ASM18951v1_genomic.fna',\n", |
||
| 6901 | " 'description': 'NC_017467.1 Lactobacillus helveticus H10, complete genome',\n", |
||
| 6902 | " 'id': 'NC_017467.1',\n", |
||
| 6903 | " 'name': 'NC_017467.1'},\n", |
||
| 6904 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000017805.1_ASM1780v1_genomic.fna',\n", |
||
| 6905 | " 'description': 'NC_009767.1 Roseiflexus castenholzii DSM 13941, complete genome',\n", |
||
| 6906 | " 'id': 'NC_009767.1',\n", |
||
| 6907 | " 'name': 'NC_009767.1'},\n", |
||
| 6908 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001183645.1_ASM118364v1_genomic.fna',\n", |
||
| 6909 | " 'description': 'NZ_CP012125.1 Escherichia coli strain DH1Ec095, complete genome',\n", |
||
| 6910 | " 'id': 'NZ_CP012125.1',\n", |
||
| 6911 | " 'name': 'NZ_CP012125.1'},\n", |
||
| 6912 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236565.1_Bru_genome8_genomic.fna',\n", |
||
| 6913 | " 'description': 'NZ_LT962953.1 Brucella melitensis isolate 1 genome assembly, chromosome: 1',\n", |
||
| 6914 | " 'id': 'NZ_LT962953.1',\n", |
||
| 6915 | " 'name': 'NZ_LT962953.1'},\n", |
||
| 6916 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236565.1_Bru_genome8_genomic.fna',\n", |
||
| 6917 | " 'description': 'NZ_LT962954.1 Brucella melitensis isolate 1 genome assembly, chromosome: 2',\n", |
||
| 6918 | " 'id': 'NZ_LT962954.1',\n", |
||
| 6919 | " 'name': 'NZ_LT962954.1'},\n", |
||
| 6920 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900474835.1_41800_H02_genomic.fna',\n", |
||
| 6921 | " 'description': 'NZ_LS483327.1 Streptococcus pyogenes strain NCTC12069 genome assembly, chromosome: 1',\n", |
||
| 6922 | " 'id': 'NZ_LS483327.1',\n", |
||
| 6923 | " 'name': 'NZ_LS483327.1'},\n", |
||
| 6924 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000740455.1_ASM74045v1_genomic.fna',\n", |
||
| 6925 | " 'description': 'NZ_CP008804.1 Moraxella catarrhalis strain 25240, complete genome',\n", |
||
| 6926 | " 'id': 'NZ_CP008804.1',\n", |
||
| 6927 | " 'name': 'NZ_CP008804.1'},\n", |
||
| 6928 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002853965.1_ASM285396v1_genomic.fna',\n", |
||
| 6929 | " 'description': 'NZ_CP024155.1 Escherichia coli strain 14EC047 chromosome, complete genome',\n", |
||
| 6930 | " 'id': 'NZ_CP024155.1',\n", |
||
| 6931 | " 'name': 'NZ_CP024155.1'},\n", |
||
| 6932 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002983785.1_ASM298378v1_genomic.fna',\n", |
||
| 6933 | " 'description': 'NZ_CP027402.1 Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome',\n", |
||
| 6934 | " 'id': 'NZ_CP027402.1',\n", |
||
| 6935 | " 'name': 'NZ_CP027402.1'},\n", |
||
| 6936 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003008575.1_ASM300857v1_genomic.fna',\n", |
||
| 6937 | " 'description': 'NZ_CP027667.1 Melaminivora sp. SC2-9 chromosome, complete genome',\n", |
||
| 6938 | " 'id': 'NZ_CP027667.1',\n", |
||
| 6939 | " 'name': 'NZ_CP027667.1'},\n", |
||
| 6940 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000159155.2_ASM15915v2_genomic.fna',\n", |
||
| 6941 | " 'description': 'NC_014644.1 Gardnerella vaginalis ATCC 14019 chromosome, complete genome',\n", |
||
| 6942 | " 'id': 'NC_014644.1',\n", |
||
| 6943 | " 'name': 'NC_014644.1'},\n", |
||
| 6944 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000961315.1_ASM96131v1_genomic.fna',\n", |
||
| 6945 | " 'description': 'NZ_CP009013.1 Xanthomonas citri subsp. citri strain jx4, complete genome',\n", |
||
| 6946 | " 'id': 'NZ_CP009013.1',\n", |
||
| 6947 | " 'name': 'NZ_CP009013.1'},\n", |
||
| 6948 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000026145.1_ASM2614v1_genomic.fna',\n", |
||
| 6949 | " 'description': 'NC_009445.1 Bradyrhizobium sp. ORS278,complete sequence',\n", |
||
| 6950 | " 'id': 'NC_009445.1',\n", |
||
| 6951 | " 'name': 'NC_009445.1'},\n", |
||
| 6952 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002355515.1_ASM235551v1_genomic.fna',\n", |
||
| 6953 | " 'description': 'NZ_AP014809.1 Methylobacterium populi DNA, complete genome',\n", |
||
| 6954 | " 'id': 'NZ_AP014809.1',\n", |
||
| 6955 | " 'name': 'NZ_AP014809.1'},\n", |
||
| 6956 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000166655.1_ASM16665v1_genomic.fna',\n", |
||
| 6957 | " 'description': 'NC_017403.1 Borrelia burgdorferi JD1, complete genome',\n", |
||
| 6958 | " 'id': 'NC_017403.1',\n", |
||
| 6959 | " 'name': 'NC_017403.1'},\n", |
||
| 6960 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001183705.3_ASM118370v3_genomic.fna',\n", |
||
| 6961 | " 'description': 'NZ_CP012119.2 Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome',\n", |
||
| 6962 | " 'id': 'NZ_CP012119.2',\n", |
||
| 6963 | " 'name': 'NZ_CP012119.2'},\n", |
||
| 6964 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635775.1_33763_C01_genomic.fna',\n", |
||
| 6965 | " 'description': 'NZ_LR134167.1 Avibacterium volantium strain NCTC3438 genome assembly, chromosome: 1',\n", |
||
| 6966 | " 'id': 'NZ_LR134167.1',\n", |
||
| 6967 | " 'name': 'NZ_LR134167.1'},\n", |
||
| 6968 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003073535.1_ASM307353v1_genomic.fna',\n", |
||
| 6969 | " 'description': 'NZ_CP029040.1 Salmonella enterica strain CFSAN047866 chromosome, complete genome',\n", |
||
| 6970 | " 'id': 'NZ_CP029040.1',\n", |
||
| 6971 | " 'name': 'NZ_CP029040.1'},\n", |
||
| 6972 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001506645.1_ASM150664v1_genomic.fna',\n", |
||
| 6973 | " 'description': 'NZ_CP010499.1 Campylobacter jejuni strain CJ677CC542, complete genome',\n", |
||
| 6974 | " 'id': 'NZ_CP010499.1',\n", |
||
| 6975 | " 'name': 'NZ_CP010499.1'},\n", |
||
| 6976 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003073495.1_ASM307349v1_genomic.fna',\n", |
||
| 6977 | " 'description': 'NZ_CP029036.1 Salmonella enterica subsp. enterica serovar Senftenberg str. 361154004 chromosome, complete genome',\n", |
||
| 6978 | " 'id': 'NZ_CP029036.1',\n", |
||
| 6979 | " 'name': 'NZ_CP029036.1'},\n", |
||
| 6980 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000292405.1_ASM29240v1_genomic.fna',\n", |
||
| 6981 | " 'description': 'NC_018495.1 Mycoplasma genitalium M2321, complete genome',\n", |
||
| 6982 | " 'id': 'NC_018495.1',\n", |
||
| 6983 | " 'name': 'NC_018495.1'},\n", |
||
| 6984 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002215075.1_ASM221507v1_genomic.fna',\n", |
||
| 6985 | " 'description': 'NZ_CP018145.1 Brevibacillus formosus strain NF2, complete genome',\n", |
||
| 6986 | " 'id': 'NZ_CP018145.1',\n", |
||
| 6987 | " 'name': 'NZ_CP018145.1'},\n", |
||
| 6988 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000021565.1_ASM2156v1_genomic.fna',\n", |
||
| 6989 | " 'description': 'NC_012440.1 Persephonella marina EX-H1, complete genome',\n", |
||
| 6990 | " 'id': 'NC_012440.1',\n", |
||
| 6991 | " 'name': 'NC_012440.1'},\n", |
||
| 6992 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000021565.1_ASM2156v1_genomic.fna',\n", |
||
| 6993 | " 'description': 'NC_012439.1 Persephonella marina EX-H1 plasmid, complete sequence',\n", |
||
| 6994 | " 'id': 'NC_012439.1',\n", |
||
| 6995 | " 'name': 'NC_012439.1'},\n", |
||
| 6996 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001683175.1_ASM168317v1_genomic.fna',\n", |
||
| 6997 | " 'description': 'NZ_CP012722.1 Bacillus anthracis strain PR05, complete genome',\n", |
||
| 6998 | " 'id': 'NZ_CP012722.1',\n", |
||
| 6999 | " 'name': 'NZ_CP012722.1'},\n", |
||
| 7000 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003193785.1_ASM319378v1_genomic.fna',\n", |
||
| 7001 | " 'description': 'NZ_CP029681.1 Staphylococcus aureus strain AR_0473 chromosome, complete genome',\n", |
||
| 7002 | " 'id': 'NZ_CP029681.1',\n", |
||
| 7003 | " 'name': 'NZ_CP029681.1'},\n", |
||
| 7004 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_004332035.1_ASM433203v1_genomic.fna',\n", |
||
| 7005 | " 'description': 'NZ_CP028724.1 Enterococcus faecalis strain CVM N60443F chromosome, complete genome',\n", |
||
| 7006 | " 'id': 'NZ_CP028724.1',\n", |
||
| 7007 | " 'name': 'NZ_CP028724.1'},\n", |
||
| 7008 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002219245.1_ASM221924v1_genomic.fna',\n", |
||
| 7009 | " 'description': 'NZ_CP015267.1 Mycobacterium chimaera strain ZUERICH-2 chromosome, complete genome',\n", |
||
| 7010 | " 'id': 'NZ_CP015267.1',\n", |
||
| 7011 | " 'name': 'NZ_CP015267.1'},\n", |
||
| 7012 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001865475.1_ASM186547v1_genomic.fna',\n", |
||
| 7013 | " 'description': 'NZ_CP017868.1 Campylobacter coli strain MG1116, complete genome',\n", |
||
| 7014 | " 'id': 'NZ_CP017868.1',\n", |
||
| 7015 | " 'name': 'NZ_CP017868.1'},\n", |
||
| 7016 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003018095.1_ASM301809v1_genomic.fna',\n", |
||
| 7017 | " 'description': 'NZ_CP027452.1 Escherichia coli strain 2014C-3338 chromosome, complete genome',\n", |
||
| 7018 | " 'id': 'NZ_CP027452.1',\n", |
||
| 7019 | " 'name': 'NZ_CP027452.1'},\n", |
||
| 7020 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002156785.1_ASM215678v1_genomic.fna',\n", |
||
| 7021 | " 'description': 'NZ_CP020853.1 Klebsiella pneumoniae strain KPN528 chromosome, complete genome',\n", |
||
| 7022 | " 'id': 'NZ_CP020853.1',\n", |
||
| 7023 | " 'name': 'NZ_CP020853.1'},\n", |
||
| 7024 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003812085.1_ASM381208v1_genomic.fna',\n", |
||
| 7025 | " 'description': 'NZ_CP033756.1 Klebsiella pneumoniae strain FDAARGOS_566 chromosome 1, complete sequence',\n", |
||
| 7026 | " 'id': 'NZ_CP033756.1',\n", |
||
| 7027 | " 'name': 'NZ_CP033756.1'},\n", |
||
| 7028 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003812085.1_ASM381208v1_genomic.fna',\n", |
||
| 7029 | " 'description': 'NZ_CP033757.1 Klebsiella pneumoniae strain FDAARGOS_566 chromosome 2',\n", |
||
| 7030 | " 'id': 'NZ_CP033757.1',\n", |
||
| 7031 | " 'name': 'NZ_CP033757.1'},\n", |
||
| 7032 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003288135.1_ASM328813v1_genomic.fna',\n", |
||
| 7033 | " 'description': 'NZ_CP023566.1 Lactobacillus murinus strain CR141 chromosome, complete genome',\n", |
||
| 7034 | " 'id': 'NZ_CP023566.1',\n", |
||
| 7035 | " 'name': 'NZ_CP023566.1'},\n", |
||
| 7036 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236425.1_Bru_genome11_genomic.fna',\n", |
||
| 7037 | " 'description': 'NZ_LT962922.1 Brucella melitensis isolate 1 genome assembly, chromosome: 1',\n", |
||
| 7038 | " 'id': 'NZ_LT962922.1',\n", |
||
| 7039 | " 'name': 'NZ_LT962922.1'},\n", |
||
| 7040 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900236425.1_Bru_genome11_genomic.fna',\n", |
||
| 7041 | " 'description': 'NZ_LT962923.1 Brucella melitensis isolate 1 genome assembly, chromosome: 2',\n", |
||
| 7042 | " 'id': 'NZ_LT962923.1',\n", |
||
| 7043 | " 'name': 'NZ_LT962923.1'},\n", |
||
| 7044 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001307525.1_ASM130752v1_genomic.fna',\n", |
||
| 7045 | " 'description': 'NZ_CP011400.1 Bordetella pertussis strain B3629, complete genome',\n", |
||
| 7046 | " 'id': 'NZ_CP011400.1',\n", |
||
| 7047 | " 'name': 'NZ_CP011400.1'},\n", |
||
| 7048 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001908295.1_ASM190829v1_genomic.fna',\n", |
||
| 7049 | " 'description': 'NZ_CP018677.1 Acinetobacter baumannii strain LAC4, complete genome',\n", |
||
| 7050 | " 'id': 'NZ_CP018677.1',\n", |
||
| 7051 | " 'name': 'NZ_CP018677.1'},\n", |
||
| 7052 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000318785.1_ASM31878v1_genomic.fna',\n", |
||
| 7053 | " 'description': 'NC_020940.1 Chlamydia trachomatis Ia/SotonIa3 complete genome',\n", |
||
| 7054 | " 'id': 'NC_020940.1',\n", |
||
| 7055 | " 'name': 'NC_020940.1'},\n", |
||
| 7056 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000829055.1_ASM82905v1_genomic.fna',\n", |
||
| 7057 | " 'description': 'NZ_AP012544.1 Lactobacillus casei subsp. casei ATCC 393 DNA, complete genome',\n", |
||
| 7058 | " 'id': 'NZ_AP012544.1',\n", |
||
| 7059 | " 'name': 'NZ_AP012544.1'},\n", |
||
| 7060 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001984445.1_ASM198444v1_genomic.fna',\n", |
||
| 7061 | " 'description': 'NZ_CP019457.1 Streptomyces lydicus strain GS93 isolate 23 chromosome, complete genome',\n", |
||
| 7062 | " 'id': 'NZ_CP019457.1',\n", |
||
| 7063 | " 'name': 'NZ_CP019457.1'},\n", |
||
| 7064 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002155145.1_ASM215514v1_genomic.fna',\n", |
||
| 7065 | " 'description': 'NZ_CP021323.1 Kushneria konosiri strain X49, complete genome',\n", |
||
| 7066 | " 'id': 'NZ_CP021323.1',\n", |
||
| 7067 | " 'name': 'NZ_CP021323.1'},\n", |
||
| 7068 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000759555.1_ASM75955v1_genomic.fna',\n", |
||
| 7069 | " 'description': 'NZ_CP009046.1 Staphylococcus epidermidis strain SEI, complete genome',\n", |
||
| 7070 | " 'id': 'NZ_CP009046.1',\n", |
||
| 7071 | " 'name': 'NZ_CP009046.1'},\n", |
||
| 7072 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000759555.1_ASM75955v1_genomic.fna',\n", |
||
| 7073 | " 'description': 'NZ_CP009047.1 Staphylococcus epidermidis strain SEI plasmid, complete sequence',\n", |
||
| 7074 | " 'id': 'NZ_CP009047.1',\n", |
||
| 7075 | " 'name': 'NZ_CP009047.1'},\n", |
||
| 7076 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000770155.1_ASM77015v1_genomic.fna',\n", |
||
| 7077 | " 'description': 'NZ_CP009756.1 Enterobacter cloacae strain GGT036, complete genome',\n", |
||
| 7078 | " 'id': 'NZ_CP009756.1',\n", |
||
| 7079 | " 'name': 'NZ_CP009756.1'},\n", |
||
| 7080 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001263395.1_ASM126339v1_genomic.fna',\n", |
||
| 7081 | " 'description': 'NZ_CP011786.1 Bifidobacterium actinocoloniiforme DSM 22766, complete genome',\n", |
||
| 7082 | " 'id': 'NZ_CP011786.1',\n", |
||
| 7083 | " 'name': 'NZ_CP011786.1'},\n", |
||
| 7084 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001442475.1_ASM144247v1_genomic.fna',\n", |
||
| 7085 | " 'description': 'NZ_CP013133.1 Rickettsia rhipicephali strain HJ#5, complete genome',\n", |
||
| 7086 | " 'id': 'NZ_CP013133.1',\n", |
||
| 7087 | " 'name': 'NZ_CP013133.1'},\n", |
||
| 7088 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900635825.1_34347_F01_genomic.fna',\n", |
||
| 7089 | " 'description': 'NZ_LR134176.1 Legionella pneumophila strain NCTC12179 genome assembly, chromosome: 1',\n", |
||
| 7090 | " 'id': 'NZ_LR134176.1',\n", |
||
| 7091 | " 'name': 'NZ_LR134176.1'},\n", |
||
| 7092 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000008945.1_ASM894v1_genomic.fna',\n", |
||
| 7093 | " 'description': 'NC_010816.1 Bifidobacterium longum DJO10A, complete genome',\n", |
||
| 7094 | " 'id': 'NC_010816.1',\n", |
||
| 7095 | " 'name': 'NC_010816.1'},\n", |
||
| 7096 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639595.1_E8377_hybrid_assembly_genomic.fna',\n", |
||
| 7097 | " 'description': 'NZ_LR135401.1 Enterococcus faecium isolate E8377 genome assembly, chromosome: 1',\n", |
||
| 7098 | " 'id': 'NZ_LR135401.1',\n", |
||
| 7099 | " 'name': 'NZ_LR135401.1'},\n", |
||
| 7100 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639595.1_E8377_hybrid_assembly_genomic.fna',\n", |
||
| 7101 | " 'description': 'NZ_LR135402.1 Enterococcus faecium isolate E8377 genome assembly, plasmid: 2',\n", |
||
| 7102 | " 'id': 'NZ_LR135402.1',\n", |
||
| 7103 | " 'name': 'NZ_LR135402.1'},\n", |
||
| 7104 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639595.1_E8377_hybrid_assembly_genomic.fna',\n", |
||
| 7105 | " 'description': 'NZ_LR135403.1 Enterococcus faecium isolate E8377 genome assembly, plasmid: 3',\n", |
||
| 7106 | " 'id': 'NZ_LR135403.1',\n", |
||
| 7107 | " 'name': 'NZ_LR135403.1'},\n", |
||
| 7108 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639595.1_E8377_hybrid_assembly_genomic.fna',\n", |
||
| 7109 | " 'description': 'NZ_LR135404.1 Enterococcus faecium isolate E8377 genome assembly, plasmid: 4',\n", |
||
| 7110 | " 'id': 'NZ_LR135404.1',\n", |
||
| 7111 | " 'name': 'NZ_LR135404.1'},\n", |
||
| 7112 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639595.1_E8377_hybrid_assembly_genomic.fna',\n", |
||
| 7113 | " 'description': 'NZ_LR135405.1 Enterococcus faecium isolate E8377 genome assembly, plasmid: 5',\n", |
||
| 7114 | " 'id': 'NZ_LR135405.1',\n", |
||
| 7115 | " 'name': 'NZ_LR135405.1'},\n", |
||
| 7116 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639595.1_E8377_hybrid_assembly_genomic.fna',\n", |
||
| 7117 | " 'description': 'NZ_LR135406.1 Enterococcus faecium isolate E8377 genome assembly, plasmid: 6',\n", |
||
| 7118 | " 'id': 'NZ_LR135406.1',\n", |
||
| 7119 | " 'name': 'NZ_LR135406.1'},\n", |
||
| 7120 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900639595.1_E8377_hybrid_assembly_genomic.fna',\n", |
||
| 7121 | " 'description': 'NZ_LR135407.1 Enterococcus faecium isolate E8377 genome assembly, plasmid: 7',\n", |
||
| 7122 | " 'id': 'NZ_LR135407.1',\n", |
||
| 7123 | " 'name': 'NZ_LR135407.1'},\n", |
||
| 7124 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001558475.2_ASM155847v2_genomic.fna',\n", |
||
| 7125 | " 'description': 'NZ_CP014042.2 Vibrio mimicus strain ATCC 33654 chromosome 1, complete sequence',\n", |
||
| 7126 | " 'id': 'NZ_CP014042.2',\n", |
||
| 7127 | " 'name': 'NZ_CP014042.2'},\n", |
||
| 7128 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001558475.2_ASM155847v2_genomic.fna',\n", |
||
| 7129 | " 'description': 'NZ_CP014043.2 Vibrio mimicus strain ATCC 33654 chromosome 2, complete sequence',\n", |
||
| 7130 | " 'id': 'NZ_CP014043.2',\n", |
||
| 7131 | " 'name': 'NZ_CP014043.2'},\n", |
||
| 7132 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001766335.1_ASM176633v1_genomic.fna',\n", |
||
| 7133 | " 'description': 'NZ_CP016873.1 Legionella pneumophila subsp. pneumophila strain FFI105 chromosome, complete genome',\n", |
||
| 7134 | " 'id': 'NZ_CP016873.1',\n", |
||
| 7135 | " 'name': 'NZ_CP016873.1'},\n", |
||
| 7136 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002844165.1_ASM284416v1_genomic.fna',\n", |
||
| 7137 | " 'description': 'NZ_CP022407.1 Escherichia coli O121:H19 strain 16-9255 chromosome, complete genome',\n", |
||
| 7138 | " 'id': 'NZ_CP022407.1',\n", |
||
| 7139 | " 'name': 'NZ_CP022407.1'},\n", |
||
| 7140 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002356015.1_ASM235601v1_genomic.fna',\n", |
||
| 7141 | " 'description': 'NZ_AP017901.1 Mycobacterium tuberculosis DNA, complete genome, strain: NCGM946K2',\n", |
||
| 7142 | " 'id': 'NZ_AP017901.1',\n", |
||
| 7143 | " 'name': 'NZ_AP017901.1'},\n", |
||
| 7144 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001021915.1_ASM102191v1_genomic.fna',\n", |
||
| 7145 | " 'description': 'NZ_CP007810.1 Xanthomonas oryzae pv. oryzicola strain YM15, complete genome',\n", |
||
| 7146 | " 'id': 'NZ_CP007810.1',\n", |
||
| 7147 | " 'name': 'NZ_CP007810.1'},\n", |
||
| 7148 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900475165.1_42731_D01_genomic.fna',\n", |
||
| 7149 | " 'description': 'NZ_LS483356.1 Streptococcus pyogenes strain NCTC8230 genome assembly, chromosome: 1',\n", |
||
| 7150 | " 'id': 'NZ_LS483356.1',\n", |
||
| 7151 | " 'name': 'NZ_LS483356.1'},\n", |
||
| 7152 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003265245.1_ASM326524v1_genomic.fna',\n", |
||
| 7153 | " 'description': 'NZ_CP022672.1 Shigella sonnei strain 866 chromosome, complete genome',\n", |
||
| 7154 | " 'id': 'NZ_CP022672.1',\n", |
||
| 7155 | " 'name': 'NZ_CP022672.1'},\n", |
||
| 7156 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001900335.1_ASM190033v1_genomic.fna',\n", |
||
| 7157 | " 'description': 'NZ_CP010132.1 Escherichia coli strain C10, complete genome',\n", |
||
| 7158 | " 'id': 'NZ_CP010132.1',\n", |
||
| 7159 | " 'name': 'NZ_CP010132.1'},\n", |
||
| 7160 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001618825.1_ASM161882v1_genomic.fna',\n", |
||
| 7161 | " 'description': 'NZ_CP015062.1 Mesorhizobium ciceri strain CC1192 chromosome, complete genome',\n", |
||
| 7162 | " 'id': 'NZ_CP015062.1',\n", |
||
| 7163 | " 'name': 'NZ_CP015062.1'},\n", |
||
| 7164 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001548435.1_ASM154843v1_genomic.fna',\n", |
||
| 7165 | " 'description': 'NZ_AP017308.1 Leptolyngbya sp. NIES-3755 DNA, complete genome',\n", |
||
| 7166 | " 'id': 'NZ_AP017308.1',\n", |
||
| 7167 | " 'name': 'NZ_AP017308.1'},\n", |
||
| 7168 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003111765.1_ASM311176v1_genomic.fna',\n", |
||
| 7169 | " 'description': 'NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome',\n", |
||
| 7170 | " 'id': 'NZ_CP027862.1',\n", |
||
| 7171 | " 'name': 'NZ_CP027862.1'},\n", |
||
| 7172 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002865505.1_ASM286550v1_genomic.fna',\n", |
||
| 7173 | " 'description': 'NZ_CP025542.1 Pseudomonas fluorescens strain 2P24 chromosome, complete genome',\n", |
||
| 7174 | " 'id': 'NZ_CP025542.1',\n", |
||
| 7175 | " 'name': 'NZ_CP025542.1'},\n", |
||
| 7176 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000968195.1_ASM96819v1_genomic.fna',\n", |
||
| 7177 | " 'description': 'NZ_FO704550.1 Xenorhabdus doucetiae str. FRM16 chromosome, complete genome',\n", |
||
| 7178 | " 'id': 'NZ_FO704550.1',\n", |
||
| 7179 | " 'name': 'NZ_FO704550.1'},\n", |
||
| 7180 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000016425.1_ASM1642v1_genomic.fna',\n", |
||
| 7181 | " 'description': 'NC_009380.1 Salinispora tropica CNB-440, complete genome',\n", |
||
| 7182 | " 'id': 'NC_009380.1',\n", |
||
| 7183 | " 'name': 'NC_009380.1'},\n", |
||
| 7184 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002024265.1_ASM202426v1_genomic.fna',\n", |
||
| 7185 | " 'description': 'NZ_CP016790.1 Bacillus flexus strain KLBMP 4941 chromosome, complete genome',\n", |
||
| 7186 | " 'id': 'NZ_CP016790.1',\n", |
||
| 7187 | " 'name': 'NZ_CP016790.1'},\n", |
||
| 7188 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001447115.1_ASM144711v1_genomic.fna',\n", |
||
| 7189 | " 'description': 'NZ_CP013222.1 Salmonella enterica subsp. enterica serovar Anatum strain GT-01, complete genome',\n", |
||
| 7190 | " 'id': 'NZ_CP013222.1',\n", |
||
| 7191 | " 'name': 'NZ_CP013222.1'},\n", |
||
| 7192 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_900120345.1_PRJEB18024_genomic.fna',\n", |
||
| 7193 | " 'description': 'NZ_LT635479.1 Eubacterium sp. Marseille-P3177 strain Marseille-P3177T genome assembly, chromosome: contig00001',\n", |
||
| 7194 | " 'id': 'NZ_LT635479.1',\n", |
||
| 7195 | " 'name': 'NZ_LT635479.1'},\n", |
||
| 7196 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002119765.1_ASM211976v1_genomic.fna',\n", |
||
| 7197 | " 'description': 'NZ_CP021112.1 Pseudorhodoplanes sinuspersici strain RIPI110 chromosome, complete genome',\n", |
||
| 7198 | " 'id': 'NZ_CP021112.1',\n", |
||
| 7199 | " 'name': 'NZ_CP021112.1'},\n", |
||
| 7200 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_001629705.1_ASM162970v2_genomic.fna',\n", |
||
| 7201 | " 'description': 'NZ_CP015378.1 Fictibacillus phosphorivorans strain G25-29 chromosome, complete genome',\n", |
||
| 7202 | " 'id': 'NZ_CP015378.1',\n", |
||
| 7203 | " 'name': 'NZ_CP015378.1'},\n", |
||
| 7204 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_002893885.1_ASM289388v1_genomic.fna',\n", |
||
| 7205 | " 'description': 'NZ_CP025957.1 Paenibacillus polymyxa strain HY96-2 chromosome, complete genome',\n", |
||
| 7206 | " 'id': 'NZ_CP025957.1',\n", |
||
| 7207 | " 'name': 'NZ_CP025957.1'},\n", |
||
| 7208 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000009705.1_ASM970v1_genomic.fna',\n", |
||
| 7209 | " 'description': 'NC_003272.1 Nostoc sp. PCC 7120 DNA, complete genome',\n", |
||
| 7210 | " 'id': 'NC_003272.1',\n", |
||
| 7211 | " 'name': 'NC_003272.1'},\n", |
||
| 7212 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_000348725.1_ASM34872v1_genomic.fna',\n", |
||
| 7213 | " 'description': 'NC_020813.1 Bdellovibrio exovorus JSS, complete genome',\n", |
||
| 7214 | " 'id': 'NC_020813.1',\n", |
||
| 7215 | " 'name': 'NC_020813.1'},\n", |
||
| 7216 | " {'file': '/home/serge/development/genomes/ncbi-genomes-2019-04-07/bacterial genomes/GCF_003718655.1_ASM371865v1_genomic.fna',\n", |
||
| 7217 | " 'description': 'NZ_CP029958.1 Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 chromosome, complete genome',\n", |
||
| 7218 | " 'id': 'NZ_CP029958.1',\n", |
||
| 7219 | " 'name': 'NZ_CP029958.1'},\n", |
||
| 7220 | " ...]" |
||
| 7221 | ] |
||
| 7222 | }, |
||
| 7223 | "execution_count": 31, |
||
| 7224 | "metadata": {}, |
||
| 7225 | "output_type": "execute_result" |
||
| 7226 | } |
||
| 7227 | ], |
||
| 7228 | "source": [ |
||
| 7229 | "a" |
||
| 7230 | ] |
||
| 7231 | }, |
||
| 7232 | { |
||
| 7233 | "cell_type": "code", |
||
| 7234 | "execution_count": 25, |
||
| 7235 | "metadata": {}, |
||
| 7236 | "outputs": [ |
||
| 7237 | { |
||
| 7238 | "ename": "AttributeError", |
||
| 7239 | "evalue": "'list' object has no attribute 'items'", |
||
| 7240 | "output_type": "error", |
||
| 7241 | "traceback": [ |
||
| 7242 | "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", |
||
| 7243 | "\u001b[0;31mAttributeError\u001b[0m Traceback (most recent call last)", |
||
| 7244 | "\u001b[0;32m<ipython-input-25-cd86de522b13>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0ma\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mpd\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mDataFrame\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdata\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mlist\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0ma\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mitems\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcolumns\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m\"file\"\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m\"description\"\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\"id\"\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\"name\"\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgroupby\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"file\"\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0magg\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m{\u001b[0m\u001b[0;34m\"id\"\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m'count'\u001b[0m\u001b[0;34m}\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msort_values\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'id'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mascending\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mFalse\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", |
||
| 7245 | "\u001b[0;31mAttributeError\u001b[0m: 'list' object has no attribute 'items'" |
||
| 7246 | ] |
||
| 7247 | } |
||
| 7248 | ], |
||
| 7249 | "source": [ |
||
| 7250 | "a = pd.DataFrame(data=list(a.items), columns=[\"file\", \"description\",\"id\",\"name\"]).groupby(\"file\").agg({\"id\":'count'}).sort_values('id', ascending=False)" |
||
| 7251 | ] |
||
| 7252 | }, |
||
| 7253 | { |
||
| 7254 | "cell_type": "code", |
||
| 7255 | "execution_count": 20, |
||
| 7256 | "metadata": {}, |
||
| 7257 | "outputs": [ |
||
| 7258 | { |
||
| 7259 | "data": { |
||
| 7260 | "text/html": [ |
||
| 7261 | "<div>\n", |
||
| 7262 | "<style scoped>\n", |
||
| 7263 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 7264 | " vertical-align: middle;\n", |
||
| 7265 | " }\n", |
||
| 7266 | "\n", |
||
| 7267 | " .dataframe tbody tr th {\n", |
||
| 7268 | " vertical-align: top;\n", |
||
| 7269 | " }\n", |
||
| 7270 | "\n", |
||
| 7271 | " .dataframe thead th {\n", |
||
| 7272 | " text-align: right;\n", |
||
| 7273 | " }\n", |
||
| 7274 | "</style>\n", |
||
| 7275 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 7276 | " <thead>\n", |
||
| 7277 | " <tr style=\"text-align: right;\">\n", |
||
| 7278 | " <th></th>\n", |
||
| 7279 | " <th>id</th>\n", |
||
| 7280 | " </tr>\n", |
||
| 7281 | " </thead>\n", |
||
| 7282 | " <tbody>\n", |
||
| 7283 | " <tr>\n", |
||
| 7284 | " <th>count</th>\n", |
||
| 7285 | " <td>13050.000000</td>\n", |
||
| 7286 | " </tr>\n", |
||
| 7287 | " <tr>\n", |
||
| 7288 | " <th>mean</th>\n", |
||
| 7289 | " <td>1.956552</td>\n", |
||
| 7290 | " </tr>\n", |
||
| 7291 | " <tr>\n", |
||
| 7292 | " <th>std</th>\n", |
||
| 7293 | " <td>1.742139</td>\n", |
||
| 7294 | " </tr>\n", |
||
| 7295 | " <tr>\n", |
||
| 7296 | " <th>min</th>\n", |
||
| 7297 | " <td>1.000000</td>\n", |
||
| 7298 | " </tr>\n", |
||
| 7299 | " <tr>\n", |
||
| 7300 | " <th>25%</th>\n", |
||
| 7301 | " <td>1.000000</td>\n", |
||
| 7302 | " </tr>\n", |
||
| 7303 | " <tr>\n", |
||
| 7304 | " <th>50%</th>\n", |
||
| 7305 | " <td>1.000000</td>\n", |
||
| 7306 | " </tr>\n", |
||
| 7307 | " <tr>\n", |
||
| 7308 | " <th>75%</th>\n", |
||
| 7309 | " <td>2.000000</td>\n", |
||
| 7310 | " </tr>\n", |
||
| 7311 | " <tr>\n", |
||
| 7312 | " <th>max</th>\n", |
||
| 7313 | " <td>22.000000</td>\n", |
||
| 7314 | " </tr>\n", |
||
| 7315 | " </tbody>\n", |
||
| 7316 | "</table>\n", |
||
| 7317 | "</div>" |
||
| 7318 | ], |
||
| 7319 | "text/plain": [ |
||
| 7320 | " id\n", |
||
| 7321 | "count 13050.000000\n", |
||
| 7322 | "mean 1.956552\n", |
||
| 7323 | "std 1.742139\n", |
||
| 7324 | "min 1.000000\n", |
||
| 7325 | "25% 1.000000\n", |
||
| 7326 | "50% 1.000000\n", |
||
| 7327 | "75% 2.000000\n", |
||
| 7328 | "max 22.000000" |
||
| 7329 | ] |
||
| 7330 | }, |
||
| 7331 | "execution_count": 20, |
||
| 7332 | "metadata": {}, |
||
| 7333 | "output_type": "execute_result" |
||
| 7334 | } |
||
| 7335 | ], |
||
| 7336 | "source": [ |
||
| 7337 | "a.describe()" |
||
| 7338 | ] |
||
| 7339 | }, |
||
| 7340 | { |
||
| 7341 | "cell_type": "code", |
||
| 7342 | "execution_count": 26, |
||
| 7343 | "metadata": {}, |
||
| 7344 | "outputs": [], |
||
| 7345 | "source": [ |
||
| 7346 | "inventory = pd.DataFrame(data=[l.split()[1:3] for l in all_fastas], columns=[\"genus\",\"species\" ])" |
||
| 7347 | ] |
||
| 7348 | }, |
||
| 7349 | { |
||
| 7350 | "cell_type": "code", |
||
| 7351 | "execution_count": 30, |
||
| 7352 | "metadata": { |
||
| 7353 | "scrolled": true |
||
| 7354 | }, |
||
| 7355 | "outputs": [ |
||
| 7356 | { |
||
| 7357 | "data": { |
||
| 7358 | "text/html": [ |
||
| 7359 | "<div>\n", |
||
| 7360 | "<style scoped>\n", |
||
| 7361 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 7362 | " vertical-align: middle;\n", |
||
| 7363 | " }\n", |
||
| 7364 | "\n", |
||
| 7365 | " .dataframe tbody tr th {\n", |
||
| 7366 | " vertical-align: top;\n", |
||
| 7367 | " }\n", |
||
| 7368 | "\n", |
||
| 7369 | " .dataframe thead th {\n", |
||
| 7370 | " text-align: right;\n", |
||
| 7371 | " }\n", |
||
| 7372 | "</style>\n", |
||
| 7373 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 7374 | " <thead>\n", |
||
| 7375 | " <tr style=\"text-align: right;\">\n", |
||
| 7376 | " <th></th>\n", |
||
| 7377 | " <th>species</th>\n", |
||
| 7378 | " </tr>\n", |
||
| 7379 | " <tr>\n", |
||
| 7380 | " <th>genus</th>\n", |
||
| 7381 | " <th></th>\n", |
||
| 7382 | " </tr>\n", |
||
| 7383 | " </thead>\n", |
||
| 7384 | " <tbody>\n", |
||
| 7385 | " <tr>\n", |
||
| 7386 | " <th>Escherichia</th>\n", |
||
| 7387 | " <td>2239</td>\n", |
||
| 7388 | " </tr>\n", |
||
| 7389 | " <tr>\n", |
||
| 7390 | " <th>Klebsiella</th>\n", |
||
| 7391 | " <td>1718</td>\n", |
||
| 7392 | " </tr>\n", |
||
| 7393 | " <tr>\n", |
||
| 7394 | " <th>Salmonella</th>\n", |
||
| 7395 | " <td>1183</td>\n", |
||
| 7396 | " </tr>\n", |
||
| 7397 | " <tr>\n", |
||
| 7398 | " <th>Bacillus</th>\n", |
||
| 7399 | " <td>1172</td>\n", |
||
| 7400 | " </tr>\n", |
||
| 7401 | " <tr>\n", |
||
| 7402 | " <th>Lactobacillus</th>\n", |
||
| 7403 | " <td>953</td>\n", |
||
| 7404 | " </tr>\n", |
||
| 7405 | " <tr>\n", |
||
| 7406 | " <th>Staphylococcus</th>\n", |
||
| 7407 | " <td>889</td>\n", |
||
| 7408 | " </tr>\n", |
||
| 7409 | " <tr>\n", |
||
| 7410 | " <th>Burkholderia</th>\n", |
||
| 7411 | " <td>650</td>\n", |
||
| 7412 | " </tr>\n", |
||
| 7413 | " <tr>\n", |
||
| 7414 | " <th>Enterococcus</th>\n", |
||
| 7415 | " <td>626</td>\n", |
||
| 7416 | " </tr>\n", |
||
| 7417 | " <tr>\n", |
||
| 7418 | " <th>Pseudomonas</th>\n", |
||
| 7419 | " <td>613</td>\n", |
||
| 7420 | " </tr>\n", |
||
| 7421 | " <tr>\n", |
||
| 7422 | " <th>Streptococcus</th>\n", |
||
| 7423 | " <td>564</td>\n", |
||
| 7424 | " </tr>\n", |
||
| 7425 | " <tr>\n", |
||
| 7426 | " <th>Acinetobacter</th>\n", |
||
| 7427 | " <td>531</td>\n", |
||
| 7428 | " </tr>\n", |
||
| 7429 | " <tr>\n", |
||
| 7430 | " <th>Bordetella</th>\n", |
||
| 7431 | " <td>504</td>\n", |
||
| 7432 | " </tr>\n", |
||
| 7433 | " <tr>\n", |
||
| 7434 | " <th>Vibrio</th>\n", |
||
| 7435 | " <td>474</td>\n", |
||
| 7436 | " </tr>\n", |
||
| 7437 | " <tr>\n", |
||
| 7438 | " <th>Xanthomonas</th>\n", |
||
| 7439 | " <td>395</td>\n", |
||
| 7440 | " </tr>\n", |
||
| 7441 | " <tr>\n", |
||
| 7442 | " <th>Mycobacterium</th>\n", |
||
| 7443 | " <td>368</td>\n", |
||
| 7444 | " </tr>\n", |
||
| 7445 | " <tr>\n", |
||
| 7446 | " <th>Borrelia</th>\n", |
||
| 7447 | " <td>347</td>\n", |
||
| 7448 | " </tr>\n", |
||
| 7449 | " <tr>\n", |
||
| 7450 | " <th>Campylobacter</th>\n", |
||
| 7451 | " <td>339</td>\n", |
||
| 7452 | " </tr>\n", |
||
| 7453 | " <tr>\n", |
||
| 7454 | " <th>Rhizobium</th>\n", |
||
| 7455 | " <td>307</td>\n", |
||
| 7456 | " </tr>\n", |
||
| 7457 | " <tr>\n", |
||
| 7458 | " <th>Enterobacter</th>\n", |
||
| 7459 | " <td>298</td>\n", |
||
| 7460 | " </tr>\n", |
||
| 7461 | " <tr>\n", |
||
| 7462 | " <th>Mycoplasma</th>\n", |
||
| 7463 | " <td>290</td>\n", |
||
| 7464 | " </tr>\n", |
||
| 7465 | " <tr>\n", |
||
| 7466 | " <th>Corynebacterium</th>\n", |
||
| 7467 | " <td>258</td>\n", |
||
| 7468 | " </tr>\n", |
||
| 7469 | " <tr>\n", |
||
| 7470 | " <th>Phaeobacter</th>\n", |
||
| 7471 | " <td>256</td>\n", |
||
| 7472 | " </tr>\n", |
||
| 7473 | " <tr>\n", |
||
| 7474 | " <th>Yersinia</th>\n", |
||
| 7475 | " <td>243</td>\n", |
||
| 7476 | " </tr>\n", |
||
| 7477 | " <tr>\n", |
||
| 7478 | " <th>Brucella</th>\n", |
||
| 7479 | " <td>233</td>\n", |
||
| 7480 | " </tr>\n", |
||
| 7481 | " <tr>\n", |
||
| 7482 | " <th>Clostridium</th>\n", |
||
| 7483 | " <td>228</td>\n", |
||
| 7484 | " </tr>\n", |
||
| 7485 | " <tr>\n", |
||
| 7486 | " <th>Listeria</th>\n", |
||
| 7487 | " <td>227</td>\n", |
||
| 7488 | " </tr>\n", |
||
| 7489 | " <tr>\n", |
||
| 7490 | " <th>Streptomyces</th>\n", |
||
| 7491 | " <td>225</td>\n", |
||
| 7492 | " </tr>\n", |
||
| 7493 | " <tr>\n", |
||
| 7494 | " <th>Chlamydia</th>\n", |
||
| 7495 | " <td>202</td>\n", |
||
| 7496 | " </tr>\n", |
||
| 7497 | " <tr>\n", |
||
| 7498 | " <th>Helicobacter</th>\n", |
||
| 7499 | " <td>187</td>\n", |
||
| 7500 | " </tr>\n", |
||
| 7501 | " <tr>\n", |
||
| 7502 | " <th>Candidatus</th>\n", |
||
| 7503 | " <td>187</td>\n", |
||
| 7504 | " </tr>\n", |
||
| 7505 | " <tr>\n", |
||
| 7506 | " <th>...</th>\n", |
||
| 7507 | " <td>...</td>\n", |
||
| 7508 | " </tr>\n", |
||
| 7509 | " <tr>\n", |
||
| 7510 | " <th>'Deinococcus</th>\n", |
||
| 7511 | " <td>1</td>\n", |
||
| 7512 | " </tr>\n", |
||
| 7513 | " <tr>\n", |
||
| 7514 | " <th>Mariniflexile</th>\n", |
||
| 7515 | " <td>1</td>\n", |
||
| 7516 | " </tr>\n", |
||
| 7517 | " <tr>\n", |
||
| 7518 | " <th>Marinithermus</th>\n", |
||
| 7519 | " <td>1</td>\n", |
||
| 7520 | " </tr>\n", |
||
| 7521 | " <tr>\n", |
||
| 7522 | " <th>Lactobacillales</th>\n", |
||
| 7523 | " <td>1</td>\n", |
||
| 7524 | " </tr>\n", |
||
| 7525 | " <tr>\n", |
||
| 7526 | " <th>Marinobacterium</th>\n", |
||
| 7527 | " <td>1</td>\n", |
||
| 7528 | " </tr>\n", |
||
| 7529 | " <tr>\n", |
||
| 7530 | " <th>Megamonas</th>\n", |
||
| 7531 | " <td>1</td>\n", |
||
| 7532 | " </tr>\n", |
||
| 7533 | " <tr>\n", |
||
| 7534 | " <th>Melioribacter</th>\n", |
||
| 7535 | " <td>1</td>\n", |
||
| 7536 | " </tr>\n", |
||
| 7537 | " <tr>\n", |
||
| 7538 | " <th>Melittangium</th>\n", |
||
| 7539 | " <td>1</td>\n", |
||
| 7540 | " </tr>\n", |
||
| 7541 | " <tr>\n", |
||
| 7542 | " <th>Methylobacillus</th>\n", |
||
| 7543 | " <td>1</td>\n", |
||
| 7544 | " </tr>\n", |
||
| 7545 | " <tr>\n", |
||
| 7546 | " <th>Methylocaldum</th>\n", |
||
| 7547 | " <td>1</td>\n", |
||
| 7548 | " </tr>\n", |
||
| 7549 | " <tr>\n", |
||
| 7550 | " <th>Magnetococcus</th>\n", |
||
| 7551 | " <td>1</td>\n", |
||
| 7552 | " </tr>\n", |
||
| 7553 | " <tr>\n", |
||
| 7554 | " <th>Mageeibacillus</th>\n", |
||
| 7555 | " <td>1</td>\n", |
||
| 7556 | " </tr>\n", |
||
| 7557 | " <tr>\n", |
||
| 7558 | " <th>Lysinimonas</th>\n", |
||
| 7559 | " <td>1</td>\n", |
||
| 7560 | " </tr>\n", |
||
| 7561 | " <tr>\n", |
||
| 7562 | " <th>Luteitalea</th>\n", |
||
| 7563 | " <td>1</td>\n", |
||
| 7564 | " </tr>\n", |
||
| 7565 | " <tr>\n", |
||
| 7566 | " <th>Lacunisphaera</th>\n", |
||
| 7567 | " <td>1</td>\n", |
||
| 7568 | " </tr>\n", |
||
| 7569 | " <tr>\n", |
||
| 7570 | " <th>Lautropia</th>\n", |
||
| 7571 | " <td>1</td>\n", |
||
| 7572 | " </tr>\n", |
||
| 7573 | " <tr>\n", |
||
| 7574 | " <th>Leadbetterella</th>\n", |
||
| 7575 | " <td>1</td>\n", |
||
| 7576 | " </tr>\n", |
||
| 7577 | " <tr>\n", |
||
| 7578 | " <th>Leminorella</th>\n", |
||
| 7579 | " <td>1</td>\n", |
||
| 7580 | " </tr>\n", |
||
| 7581 | " <tr>\n", |
||
| 7582 | " <th>Lentibacillus</th>\n", |
||
| 7583 | " <td>1</td>\n", |
||
| 7584 | " </tr>\n", |
||
| 7585 | " <tr>\n", |
||
| 7586 | " <th>Lentzea</th>\n", |
||
| 7587 | " <td>1</td>\n", |
||
| 7588 | " </tr>\n", |
||
| 7589 | " <tr>\n", |
||
| 7590 | " <th>Leptothrix</th>\n", |
||
| 7591 | " <td>1</td>\n", |
||
| 7592 | " </tr>\n", |
||
| 7593 | " <tr>\n", |
||
| 7594 | " <th>Levyella</th>\n", |
||
| 7595 | " <td>1</td>\n", |
||
| 7596 | " </tr>\n", |
||
| 7597 | " <tr>\n", |
||
| 7598 | " <th>Limnobaculum</th>\n", |
||
| 7599 | " <td>1</td>\n", |
||
| 7600 | " </tr>\n", |
||
| 7601 | " <tr>\n", |
||
| 7602 | " <th>Limnochorda</th>\n", |
||
| 7603 | " <td>1</td>\n", |
||
| 7604 | " </tr>\n", |
||
| 7605 | " <tr>\n", |
||
| 7606 | " <th>Litorilituus</th>\n", |
||
| 7607 | " <td>1</td>\n", |
||
| 7608 | " </tr>\n", |
||
| 7609 | " <tr>\n", |
||
| 7610 | " <th>Lonsdalea</th>\n", |
||
| 7611 | " <td>1</td>\n", |
||
| 7612 | " </tr>\n", |
||
| 7613 | " <tr>\n", |
||
| 7614 | " <th>Luteibacter</th>\n", |
||
| 7615 | " <td>1</td>\n", |
||
| 7616 | " </tr>\n", |
||
| 7617 | " <tr>\n", |
||
| 7618 | " <th>Luteipulveratus</th>\n", |
||
| 7619 | " <td>1</td>\n", |
||
| 7620 | " </tr>\n", |
||
| 7621 | " <tr>\n", |
||
| 7622 | " <th>secondary</th>\n", |
||
| 7623 | " <td>1</td>\n", |
||
| 7624 | " </tr>\n", |
||
| 7625 | " <tr>\n", |
||
| 7626 | " <th>plasmid1</th>\n", |
||
| 7627 | " <td>0</td>\n", |
||
| 7628 | " </tr>\n", |
||
| 7629 | " </tbody>\n", |
||
| 7630 | "</table>\n", |
||
| 7631 | "<p>1120 rows × 1 columns</p>\n", |
||
| 7632 | "</div>" |
||
| 7633 | ], |
||
| 7634 | "text/plain": [ |
||
| 7635 | " species\n", |
||
| 7636 | "genus \n", |
||
| 7637 | "Escherichia 2239\n", |
||
| 7638 | "Klebsiella 1718\n", |
||
| 7639 | "Salmonella 1183\n", |
||
| 7640 | "Bacillus 1172\n", |
||
| 7641 | "Lactobacillus 953\n", |
||
| 7642 | "Staphylococcus 889\n", |
||
| 7643 | "Burkholderia 650\n", |
||
| 7644 | "Enterococcus 626\n", |
||
| 7645 | "Pseudomonas 613\n", |
||
| 7646 | "Streptococcus 564\n", |
||
| 7647 | "Acinetobacter 531\n", |
||
| 7648 | "Bordetella 504\n", |
||
| 7649 | "Vibrio 474\n", |
||
| 7650 | "Xanthomonas 395\n", |
||
| 7651 | "Mycobacterium 368\n", |
||
| 7652 | "Borrelia 347\n", |
||
| 7653 | "Campylobacter 339\n", |
||
| 7654 | "Rhizobium 307\n", |
||
| 7655 | "Enterobacter 298\n", |
||
| 7656 | "Mycoplasma 290\n", |
||
| 7657 | "Corynebacterium 258\n", |
||
| 7658 | "Phaeobacter 256\n", |
||
| 7659 | "Yersinia 243\n", |
||
| 7660 | "Brucella 233\n", |
||
| 7661 | "Clostridium 228\n", |
||
| 7662 | "Listeria 227\n", |
||
| 7663 | "Streptomyces 225\n", |
||
| 7664 | "Chlamydia 202\n", |
||
| 7665 | "Helicobacter 187\n", |
||
| 7666 | "Candidatus 187\n", |
||
| 7667 | "... ...\n", |
||
| 7668 | "'Deinococcus 1\n", |
||
| 7669 | "Mariniflexile 1\n", |
||
| 7670 | "Marinithermus 1\n", |
||
| 7671 | "Lactobacillales 1\n", |
||
| 7672 | "Marinobacterium 1\n", |
||
| 7673 | "Megamonas 1\n", |
||
| 7674 | "Melioribacter 1\n", |
||
| 7675 | "Melittangium 1\n", |
||
| 7676 | "Methylobacillus 1\n", |
||
| 7677 | "Methylocaldum 1\n", |
||
| 7678 | "Magnetococcus 1\n", |
||
| 7679 | "Mageeibacillus 1\n", |
||
| 7680 | "Lysinimonas 1\n", |
||
| 7681 | "Luteitalea 1\n", |
||
| 7682 | "Lacunisphaera 1\n", |
||
| 7683 | "Lautropia 1\n", |
||
| 7684 | "Leadbetterella 1\n", |
||
| 7685 | "Leminorella 1\n", |
||
| 7686 | "Lentibacillus 1\n", |
||
| 7687 | "Lentzea 1\n", |
||
| 7688 | "Leptothrix 1\n", |
||
| 7689 | "Levyella 1\n", |
||
| 7690 | "Limnobaculum 1\n", |
||
| 7691 | "Limnochorda 1\n", |
||
| 7692 | "Litorilituus 1\n", |
||
| 7693 | "Lonsdalea 1\n", |
||
| 7694 | "Luteibacter 1\n", |
||
| 7695 | "Luteipulveratus 1\n", |
||
| 7696 | "secondary 1\n", |
||
| 7697 | "plasmid1 0\n", |
||
| 7698 | "\n", |
||
| 7699 | "[1120 rows x 1 columns]" |
||
| 7700 | ] |
||
| 7701 | }, |
||
| 7702 | "execution_count": 30, |
||
| 7703 | "metadata": {}, |
||
| 7704 | "output_type": "execute_result" |
||
| 7705 | } |
||
| 7706 | ], |
||
| 7707 | "source": [ |
||
| 7708 | "inventory.groupby(\"genus\").agg({\"species\":\"count\"}).sort_values(\"species\",ascending=False)" |
||
| 7709 | ] |
||
| 7710 | }, |
||
| 7711 | { |
||
| 7712 | "cell_type": "code", |
||
| 7713 | "execution_count": 6, |
||
| 7714 | "metadata": {}, |
||
| 7715 | "outputs": [ |
||
| 7716 | { |
||
| 7717 | "ename": "NameError", |
||
| 7718 | "evalue": "name 'all_fasts' is not defined", |
||
| 7719 | "output_type": "error", |
||
| 7720 | "traceback": [ |
||
| 7721 | "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", |
||
| 7722 | "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)", |
||
| 7723 | "\u001b[0;32m<ipython-input-6-6d89bdb036cc>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mall_fasts\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", |
||
| 7724 | "\u001b[0;31mNameError\u001b[0m: name 'all_fasts' is not defined" |
||
| 7725 | ] |
||
| 7726 | } |
||
| 7727 | ], |
||
| 7728 | "source": [ |
||
| 7729 | "all_fasts" |
||
| 7730 | ] |
||
| 7731 | }, |
||
| 7732 | { |
||
| 7733 | "cell_type": "code", |
||
| 7734 | "execution_count": 24, |
||
| 7735 | "metadata": { |
||
| 7736 | "scrolled": false |
||
| 7737 | }, |
||
| 7738 | "outputs": [ |
||
| 7739 | { |
||
| 7740 | "data": { |
||
| 7741 | "text/html": [ |
||
| 7742 | "<div>\n", |
||
| 7743 | "<style scoped>\n", |
||
| 7744 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 7745 | " vertical-align: middle;\n", |
||
| 7746 | " }\n", |
||
| 7747 | "\n", |
||
| 7748 | " .dataframe tbody tr th {\n", |
||
| 7749 | " vertical-align: top;\n", |
||
| 7750 | " }\n", |
||
| 7751 | "\n", |
||
| 7752 | " .dataframe thead th {\n", |
||
| 7753 | " text-align: right;\n", |
||
| 7754 | " }\n", |
||
| 7755 | "</style>\n", |
||
| 7756 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 7757 | " <thead>\n", |
||
| 7758 | " <tr style=\"text-align: right;\">\n", |
||
| 7759 | " <th></th>\n", |
||
| 7760 | " <th></th>\n", |
||
| 7761 | " <th>count</th>\n", |
||
| 7762 | " </tr>\n", |
||
| 7763 | " <tr>\n", |
||
| 7764 | " <th>genus</th>\n", |
||
| 7765 | " <th>species</th>\n", |
||
| 7766 | " <th></th>\n", |
||
| 7767 | " </tr>\n", |
||
| 7768 | " </thead>\n", |
||
| 7769 | " <tbody>\n", |
||
| 7770 | " <tr>\n", |
||
| 7771 | " <th>'Catharanthus</th>\n", |
||
| 7772 | " <th>roseus'</th>\n", |
||
| 7773 | " <td>2</td>\n", |
||
| 7774 | " </tr>\n", |
||
| 7775 | " <tr>\n", |
||
| 7776 | " <th>'Deinococcus</th>\n", |
||
| 7777 | " <th>soli'</th>\n", |
||
| 7778 | " <td>1</td>\n", |
||
| 7779 | " </tr>\n", |
||
| 7780 | " <tr>\n", |
||
| 7781 | " <th>'Nostoc</th>\n", |
||
| 7782 | " <th>azollae'</th>\n", |
||
| 7783 | " <td>3</td>\n", |
||
| 7784 | " </tr>\n", |
||
| 7785 | " <tr>\n", |
||
| 7786 | " <th>18,711,729</th>\n", |
||
| 7787 | " <th>reads</th>\n", |
||
| 7788 | " <td>1</td>\n", |
||
| 7789 | " </tr>\n", |
||
| 7790 | " <tr>\n", |
||
| 7791 | " <th>Acaryochloris</th>\n", |
||
| 7792 | " <th>marina</th>\n", |
||
| 7793 | " <td>10</td>\n", |
||
| 7794 | " </tr>\n", |
||
| 7795 | " <tr>\n", |
||
| 7796 | " <th rowspan=\"10\" valign=\"top\">Acetobacter</th>\n", |
||
| 7797 | " <th>aceti</th>\n", |
||
| 7798 | " <td>1</td>\n", |
||
| 7799 | " </tr>\n", |
||
| 7800 | " <tr>\n", |
||
| 7801 | " <th>ascendens</th>\n", |
||
| 7802 | " <td>1</td>\n", |
||
| 7803 | " </tr>\n", |
||
| 7804 | " <tr>\n", |
||
| 7805 | " <th>orientalis</th>\n", |
||
| 7806 | " <td>2</td>\n", |
||
| 7807 | " </tr>\n", |
||
| 7808 | " <tr>\n", |
||
| 7809 | " <th>oryzifermentans</th>\n", |
||
| 7810 | " <td>1</td>\n", |
||
| 7811 | " </tr>\n", |
||
| 7812 | " <tr>\n", |
||
| 7813 | " <th>pasteurianus</th>\n", |
||
| 7814 | " <td>91</td>\n", |
||
| 7815 | " </tr>\n", |
||
| 7816 | " <tr>\n", |
||
| 7817 | " <th>persici</th>\n", |
||
| 7818 | " <td>2</td>\n", |
||
| 7819 | " </tr>\n", |
||
| 7820 | " <tr>\n", |
||
| 7821 | " <th>pomorum</th>\n", |
||
| 7822 | " <td>7</td>\n", |
||
| 7823 | " </tr>\n", |
||
| 7824 | " <tr>\n", |
||
| 7825 | " <th>senegalensis</th>\n", |
||
| 7826 | " <td>2</td>\n", |
||
| 7827 | " </tr>\n", |
||
| 7828 | " <tr>\n", |
||
| 7829 | " <th>sp.</th>\n", |
||
| 7830 | " <td>7</td>\n", |
||
| 7831 | " </tr>\n", |
||
| 7832 | " <tr>\n", |
||
| 7833 | " <th>tropicalis</th>\n", |
||
| 7834 | " <td>2</td>\n", |
||
| 7835 | " </tr>\n", |
||
| 7836 | " <tr>\n", |
||
| 7837 | " <th>Acetobacterium</th>\n", |
||
| 7838 | " <th>woodii</th>\n", |
||
| 7839 | " <td>1</td>\n", |
||
| 7840 | " </tr>\n", |
||
| 7841 | " <tr>\n", |
||
| 7842 | " <th>Acetohalobium</th>\n", |
||
| 7843 | " <th>arabaticum</th>\n", |
||
| 7844 | " <td>1</td>\n", |
||
| 7845 | " </tr>\n", |
||
| 7846 | " <tr>\n", |
||
| 7847 | " <th>Acetomicrobium</th>\n", |
||
| 7848 | " <th>mobile</th>\n", |
||
| 7849 | " <td>1</td>\n", |
||
| 7850 | " </tr>\n", |
||
| 7851 | " <tr>\n", |
||
| 7852 | " <th rowspan=\"4\" valign=\"top\">Acholeplasma</th>\n", |
||
| 7853 | " <th>axanthum</th>\n", |
||
| 7854 | " <td>1</td>\n", |
||
| 7855 | " </tr>\n", |
||
| 7856 | " <tr>\n", |
||
| 7857 | " <th>hippikon</th>\n", |
||
| 7858 | " <td>2</td>\n", |
||
| 7859 | " </tr>\n", |
||
| 7860 | " <tr>\n", |
||
| 7861 | " <th>laidlawii</th>\n", |
||
| 7862 | " <td>2</td>\n", |
||
| 7863 | " </tr>\n", |
||
| 7864 | " <tr>\n", |
||
| 7865 | " <th>oculi</th>\n", |
||
| 7866 | " <td>1</td>\n", |
||
| 7867 | " </tr>\n", |
||
| 7868 | " <tr>\n", |
||
| 7869 | " <th rowspan=\"5\" valign=\"top\">Achromobacter</th>\n", |
||
| 7870 | " <th>denitrificans</th>\n", |
||
| 7871 | " <td>3</td>\n", |
||
| 7872 | " </tr>\n", |
||
| 7873 | " <tr>\n", |
||
| 7874 | " <th>insolitus</th>\n", |
||
| 7875 | " <td>4</td>\n", |
||
| 7876 | " </tr>\n", |
||
| 7877 | " <tr>\n", |
||
| 7878 | " <th>sp.</th>\n", |
||
| 7879 | " <td>2</td>\n", |
||
| 7880 | " </tr>\n", |
||
| 7881 | " <tr>\n", |
||
| 7882 | " <th>spanius</th>\n", |
||
| 7883 | " <td>4</td>\n", |
||
| 7884 | " </tr>\n", |
||
| 7885 | " <tr>\n", |
||
| 7886 | " <th>xylosoxidans</th>\n", |
||
| 7887 | " <td>11</td>\n", |
||
| 7888 | " </tr>\n", |
||
| 7889 | " <tr>\n", |
||
| 7890 | " <th rowspan=\"2\" valign=\"top\">Acidaminococcus</th>\n", |
||
| 7891 | " <th>fermentans</th>\n", |
||
| 7892 | " <td>1</td>\n", |
||
| 7893 | " </tr>\n", |
||
| 7894 | " <tr>\n", |
||
| 7895 | " <th>intestini</th>\n", |
||
| 7896 | " <td>1</td>\n", |
||
| 7897 | " </tr>\n", |
||
| 7898 | " <tr>\n", |
||
| 7899 | " <th>Acidiferrobacter</th>\n", |
||
| 7900 | " <th>sp.</th>\n", |
||
| 7901 | " <td>1</td>\n", |
||
| 7902 | " </tr>\n", |
||
| 7903 | " <tr>\n", |
||
| 7904 | " <th>...</th>\n", |
||
| 7905 | " <th>...</th>\n", |
||
| 7906 | " <td>...</td>\n", |
||
| 7907 | " </tr>\n", |
||
| 7908 | " <tr>\n", |
||
| 7909 | " <th>Zymobacter</th>\n", |
||
| 7910 | " <th>palmae</th>\n", |
||
| 7911 | " <td>2</td>\n", |
||
| 7912 | " </tr>\n", |
||
| 7913 | " <tr>\n", |
||
| 7914 | " <th>Zymomonas</th>\n", |
||
| 7915 | " <th>mobilis</th>\n", |
||
| 7916 | " <td>49</td>\n", |
||
| 7917 | " </tr>\n", |
||
| 7918 | " <tr>\n", |
||
| 7919 | " <th>[Arcobacter]</th>\n", |
||
| 7920 | " <th>porcinus</th>\n", |
||
| 7921 | " <td>1</td>\n", |
||
| 7922 | " </tr>\n", |
||
| 7923 | " <tr>\n", |
||
| 7924 | " <th>[Bacillus</th>\n", |
||
| 7925 | " <th>thuringiensis]</th>\n", |
||
| 7926 | " <td>2</td>\n", |
||
| 7927 | " </tr>\n", |
||
| 7928 | " <tr>\n", |
||
| 7929 | " <th rowspan=\"2\" valign=\"top\">[Bacillus]</th>\n", |
||
| 7930 | " <th>caldolyticus</th>\n", |
||
| 7931 | " <td>2</td>\n", |
||
| 7932 | " </tr>\n", |
||
| 7933 | " <tr>\n", |
||
| 7934 | " <th>selenitireducens</th>\n", |
||
| 7935 | " <td>1</td>\n", |
||
| 7936 | " </tr>\n", |
||
| 7937 | " <tr>\n", |
||
| 7938 | " <th rowspan=\"2\" valign=\"top\">[Brevibacterium]</th>\n", |
||
| 7939 | " <th>flavum</th>\n", |
||
| 7940 | " <td>2</td>\n", |
||
| 7941 | " </tr>\n", |
||
| 7942 | " <tr>\n", |
||
| 7943 | " <th>frigoritolerans</th>\n", |
||
| 7944 | " <td>1</td>\n", |
||
| 7945 | " </tr>\n", |
||
| 7946 | " <tr>\n", |
||
| 7947 | " <th rowspan=\"8\" valign=\"top\">[Clostridium]</th>\n", |
||
| 7948 | " <th>bolteae</th>\n", |
||
| 7949 | " <td>2</td>\n", |
||
| 7950 | " </tr>\n", |
||
| 7951 | " <tr>\n", |
||
| 7952 | " <th>cellulolyticum</th>\n", |
||
| 7953 | " <td>1</td>\n", |
||
| 7954 | " </tr>\n", |
||
| 7955 | " <tr>\n", |
||
| 7956 | " <th>cellulosi</th>\n", |
||
| 7957 | " <td>1</td>\n", |
||
| 7958 | " </tr>\n", |
||
| 7959 | " <tr>\n", |
||
| 7960 | " <th>clariflavum</th>\n", |
||
| 7961 | " <td>1</td>\n", |
||
| 7962 | " </tr>\n", |
||
| 7963 | " <tr>\n", |
||
| 7964 | " <th>propionicum</th>\n", |
||
| 7965 | " <td>1</td>\n", |
||
| 7966 | " </tr>\n", |
||
| 7967 | " <tr>\n", |
||
| 7968 | " <th>saccharolyticum</th>\n", |
||
| 7969 | " <td>1</td>\n", |
||
| 7970 | " </tr>\n", |
||
| 7971 | " <tr>\n", |
||
| 7972 | " <th>scindens</th>\n", |
||
| 7973 | " <td>1</td>\n", |
||
| 7974 | " </tr>\n", |
||
| 7975 | " <tr>\n", |
||
| 7976 | " <th>stercorarium</th>\n", |
||
| 7977 | " <td>4</td>\n", |
||
| 7978 | " </tr>\n", |
||
| 7979 | " <tr>\n", |
||
| 7980 | " <th>[Enterobacter]</th>\n", |
||
| 7981 | " <th>lignolyticus</th>\n", |
||
| 7982 | " <td>1</td>\n", |
||
| 7983 | " </tr>\n", |
||
| 7984 | " <tr>\n", |
||
| 7985 | " <th rowspan=\"3\" valign=\"top\">[Eubacterium]</th>\n", |
||
| 7986 | " <th>eligens</th>\n", |
||
| 7987 | " <td>3</td>\n", |
||
| 7988 | " </tr>\n", |
||
| 7989 | " <tr>\n", |
||
| 7990 | " <th>hallii</th>\n", |
||
| 7991 | " <td>1</td>\n", |
||
| 7992 | " </tr>\n", |
||
| 7993 | " <tr>\n", |
||
| 7994 | " <th>rectale</th>\n", |
||
| 7995 | " <td>1</td>\n", |
||
| 7996 | " </tr>\n", |
||
| 7997 | " <tr>\n", |
||
| 7998 | " <th rowspan=\"2\" valign=\"top\">[Haemophilus]</th>\n", |
||
| 7999 | " <th>ducreyi</th>\n", |
||
| 8000 | " <td>14</td>\n", |
||
| 8001 | " </tr>\n", |
||
| 8002 | " <tr>\n", |
||
| 8003 | " <th>parasuis</th>\n", |
||
| 8004 | " <td>4</td>\n", |
||
| 8005 | " </tr>\n", |
||
| 8006 | " <tr>\n", |
||
| 8007 | " <th>[Mycobacterium]</th>\n", |
||
| 8008 | " <th>chelonae</th>\n", |
||
| 8009 | " <td>2</td>\n", |
||
| 8010 | " </tr>\n", |
||
| 8011 | " <tr>\n", |
||
| 8012 | " <th>[Pasteurella]</th>\n", |
||
| 8013 | " <th>aerogenes</th>\n", |
||
| 8014 | " <td>1</td>\n", |
||
| 8015 | " </tr>\n", |
||
| 8016 | " <tr>\n", |
||
| 8017 | " <th>[Polyangium]</th>\n", |
||
| 8018 | " <th>brachysporum</th>\n", |
||
| 8019 | " <td>1</td>\n", |
||
| 8020 | " </tr>\n", |
||
| 8021 | " <tr>\n", |
||
| 8022 | " <th>[Pseudomonas</th>\n", |
||
| 8023 | " <th>syringae]</th>\n", |
||
| 8024 | " <td>3</td>\n", |
||
| 8025 | " </tr>\n", |
||
| 8026 | " <tr>\n", |
||
| 8027 | " <th>[Pseudomonas]</th>\n", |
||
| 8028 | " <th>mesoacidophila</th>\n", |
||
| 8029 | " <td>4</td>\n", |
||
| 8030 | " </tr>\n", |
||
| 8031 | " <tr>\n", |
||
| 8032 | " <th>complete</th>\n", |
||
| 8033 | " <th>chromosome</th>\n", |
||
| 8034 | " <td>2</td>\n", |
||
| 8035 | " </tr>\n", |
||
| 8036 | " <tr>\n", |
||
| 8037 | " <th>gamma</th>\n", |
||
| 8038 | " <th>proteobacterium</th>\n", |
||
| 8039 | " <td>1</td>\n", |
||
| 8040 | " </tr>\n", |
||
| 8041 | " <tr>\n", |
||
| 8042 | " <th>secondary</th>\n", |
||
| 8043 | " <th>endosymbiont</th>\n", |
||
| 8044 | " <td>1</td>\n", |
||
| 8045 | " </tr>\n", |
||
| 8046 | " </tbody>\n", |
||
| 8047 | "</table>\n", |
||
| 8048 | "<p>3186 rows × 1 columns</p>\n", |
||
| 8049 | "</div>" |
||
| 8050 | ], |
||
| 8051 | "text/plain": [ |
||
| 8052 | " count\n", |
||
| 8053 | "genus species \n", |
||
| 8054 | "'Catharanthus roseus' 2\n", |
||
| 8055 | "'Deinococcus soli' 1\n", |
||
| 8056 | "'Nostoc azollae' 3\n", |
||
| 8057 | "18,711,729 reads 1\n", |
||
| 8058 | "Acaryochloris marina 10\n", |
||
| 8059 | "Acetobacter aceti 1\n", |
||
| 8060 | " ascendens 1\n", |
||
| 8061 | " orientalis 2\n", |
||
| 8062 | " oryzifermentans 1\n", |
||
| 8063 | " pasteurianus 91\n", |
||
| 8064 | " persici 2\n", |
||
| 8065 | " pomorum 7\n", |
||
| 8066 | " senegalensis 2\n", |
||
| 8067 | " sp. 7\n", |
||
| 8068 | " tropicalis 2\n", |
||
| 8069 | "Acetobacterium woodii 1\n", |
||
| 8070 | "Acetohalobium arabaticum 1\n", |
||
| 8071 | "Acetomicrobium mobile 1\n", |
||
| 8072 | "Acholeplasma axanthum 1\n", |
||
| 8073 | " hippikon 2\n", |
||
| 8074 | " laidlawii 2\n", |
||
| 8075 | " oculi 1\n", |
||
| 8076 | "Achromobacter denitrificans 3\n", |
||
| 8077 | " insolitus 4\n", |
||
| 8078 | " sp. 2\n", |
||
| 8079 | " spanius 4\n", |
||
| 8080 | " xylosoxidans 11\n", |
||
| 8081 | "Acidaminococcus fermentans 1\n", |
||
| 8082 | " intestini 1\n", |
||
| 8083 | "Acidiferrobacter sp. 1\n", |
||
| 8084 | "... ...\n", |
||
| 8085 | "Zymobacter palmae 2\n", |
||
| 8086 | "Zymomonas mobilis 49\n", |
||
| 8087 | "[Arcobacter] porcinus 1\n", |
||
| 8088 | "[Bacillus thuringiensis] 2\n", |
||
| 8089 | "[Bacillus] caldolyticus 2\n", |
||
| 8090 | " selenitireducens 1\n", |
||
| 8091 | "[Brevibacterium] flavum 2\n", |
||
| 8092 | " frigoritolerans 1\n", |
||
| 8093 | "[Clostridium] bolteae 2\n", |
||
| 8094 | " cellulolyticum 1\n", |
||
| 8095 | " cellulosi 1\n", |
||
| 8096 | " clariflavum 1\n", |
||
| 8097 | " propionicum 1\n", |
||
| 8098 | " saccharolyticum 1\n", |
||
| 8099 | " scindens 1\n", |
||
| 8100 | " stercorarium 4\n", |
||
| 8101 | "[Enterobacter] lignolyticus 1\n", |
||
| 8102 | "[Eubacterium] eligens 3\n", |
||
| 8103 | " hallii 1\n", |
||
| 8104 | " rectale 1\n", |
||
| 8105 | "[Haemophilus] ducreyi 14\n", |
||
| 8106 | " parasuis 4\n", |
||
| 8107 | "[Mycobacterium] chelonae 2\n", |
||
| 8108 | "[Pasteurella] aerogenes 1\n", |
||
| 8109 | "[Polyangium] brachysporum 1\n", |
||
| 8110 | "[Pseudomonas syringae] 3\n", |
||
| 8111 | "[Pseudomonas] mesoacidophila 4\n", |
||
| 8112 | "complete chromosome 2\n", |
||
| 8113 | "gamma proteobacterium 1\n", |
||
| 8114 | "secondary endosymbiont 1\n", |
||
| 8115 | "\n", |
||
| 8116 | "[3186 rows x 1 columns]" |
||
| 8117 | ] |
||
| 8118 | }, |
||
| 8119 | "execution_count": 24, |
||
| 8120 | "metadata": {}, |
||
| 8121 | "output_type": "execute_result" |
||
| 8122 | } |
||
| 8123 | ], |
||
| 8124 | "source": [ |
||
| 8125 | "inventory.groupby([\"genus\", \"species\"]).agg({\"species\": \"count\"})\n", |
||
| 8126 | "inventory.columns=[\"count\"]\n", |
||
| 8127 | "inventory" |
||
| 8128 | ] |
||
| 8129 | }, |
||
| 8130 | { |
||
| 8131 | "cell_type": "code", |
||
| 8132 | "execution_count": 25, |
||
| 8133 | "metadata": { |
||
| 8134 | "collapsed": true |
||
| 8135 | }, |
||
| 8136 | "outputs": [ |
||
| 8137 | { |
||
| 8138 | "data": { |
||
| 8139 | "text/plain": [ |
||
| 8140 | "['NZ_CP013305.1 Vibrio cholerae strain CRC1106 chromosome 1, complete sequence',\n", |
||
| 8141 | " 'NZ_CP013306.1 Vibrio cholerae strain CRC1106 chromosome 2, complete sequence',\n", |
||
| 8142 | " 'NC_013791.2 Bacillus pseudofirmus OF4, complete genome',\n", |
||
| 8143 | " 'NC_013792.1 Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence',\n", |
||
| 8144 | " 'NC_013793.1 Bacillus pseudofirmus OF4 plasmid pBpOF4-02, complete sequence',\n", |
||
| 8145 | " 'NC_000913.3 Escherichia coli str. K-12 substr. MG1655, complete genome',\n", |
||
| 8146 | " 'NC_007164.1 Corynebacterium jeikeium K411 complete genome',\n", |
||
| 8147 | " 'NC_003080.1 Corynebacterium jeikeium K411 plasmid pKW4, complete sequence',\n", |
||
| 8148 | " 'NC_002162.1 Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome',\n", |
||
| 8149 | " 'NC_004088.1 Yersinia pestis KIM10+, complete genome',\n", |
||
| 8150 | " 'NC_004838.1 Yersinia pestis KIM10+ plasmid pMT-1, complete sequence',\n", |
||
| 8151 | " 'NC_002620.2 Chlamydia muridarum Nigg, complete genome',\n", |
||
| 8152 | " 'NC_002182.1 Chlamydia muridarum Nigg plasmid pMoPn, complete sequence',\n", |
||
| 8153 | " 'NC_002488.3 Xylella fastidiosa 9a5c, complete genome',\n", |
||
| 8154 | " 'NC_002489.3 Xylella fastidiosa 9a5c plasmid pXF1.3, complete sequence',\n", |
||
| 8155 | " 'NC_002490.1 Xylella fastidiosa 9a5c plasmid pXF51, complete sequence',\n", |
||
| 8156 | " 'NC_002505.1 Vibrio cholerae O1 biovar El Tor str. N16961 chromosome I, complete sequence',\n", |
||
| 8157 | " 'NC_002506.1 Vibrio cholerae O1 biovar El Tor str. N16961 chromosome II, complete sequence',\n", |
||
| 8158 | " 'NC_002516.2 Pseudomonas aeruginosa PAO1, complete genome',\n", |
||
| 8159 | " 'NC_002737.2 Streptococcus pyogenes M1 GAS, complete genome',\n", |
||
| 8160 | " 'NC_002663.1 Pasteurella multocida subsp. multocida str. Pm70, complete genome',\n", |
||
| 8161 | " 'NC_002946.2 Neisseria gonorrhoeae FA 1090 chromosome, complete genome',\n", |
||
| 8162 | " 'NC_002662.1 Lactococcus lactis subsp. lactis Il1403 chromosome, complete genome',\n", |
||
| 8163 | " 'NC_003028.3 Streptococcus pneumoniae TIGR4, complete genome',\n", |
||
| 8164 | " 'NC_002696.2 Caulobacter crescentus CB15 chromosome, complete genome',\n", |
||
| 8165 | " 'NC_004337.2 Shigella flexneri 2a str. 301 chromosome, complete genome',\n", |
||
| 8166 | " 'NC_004851.1 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence',\n", |
||
| 8167 | " 'NC_013174.1 Jonesia denitrificans DSM 20603, complete genome',\n", |
||
| 8168 | " 'NC_013166.1 Kangiella koreensis DSM 16069, complete genome',\n", |
||
| 8169 | " 'NC_013171.1 Anaerococcus prevotii DSM 20548, complete genome',\n", |
||
| 8170 | " 'NC_013164.1 Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence',\n", |
||
| 8171 | " 'NC_013222.1 Robiginitalea biformata HTCC2501, complete genome',\n", |
||
| 8172 | " 'NC_017285.1 Chlamydophila pneumoniae LPCoLN, complete genome',\n", |
||
| 8173 | " 'NC_017286.1 Chlamydophila pneumoniae LPCoLN plasmid, complete sequence',\n", |
||
| 8174 | " 'NC_013194.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete genome',\n", |
||
| 8175 | " 'NC_013193.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence',\n", |
||
| 8176 | " 'NC_013190.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph02, complete sequence',\n", |
||
| 8177 | " 'NC_013191.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph03, complete sequence',\n", |
||
| 8178 | " 'NC_013216.1 Desulfotomaculum acetoxidans DSM 771, complete genome',\n", |
||
| 8179 | " 'NC_013203.1 Atopobium parvulum DSM 20469, complete genome',\n", |
||
| 8180 | " 'NC_013355.1 Zymomonas mobilis subsp. mobilis NCIMB 11163, complete genome',\n", |
||
| 8181 | " 'NC_013356.1 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001, complete sequence',\n", |
||
| 8182 | " 'NC_013357.1 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence',\n", |
||
| 8183 | " 'NC_013358.1 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1003, complete sequence',\n", |
||
| 8184 | " 'NC_013204.1 Eggerthella lenta DSM 2243, complete genome',\n", |
||
| 8185 | " 'NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete genome',\n", |
||
| 8186 | " 'NC_013206.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI01, complete sequence',\n", |
||
| 8187 | " 'NC_013207.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02, complete sequence',\n", |
||
| 8188 | " 'NC_013208.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03, complete sequence',\n", |
||
| 8189 | " 'NC_013223.1 Desulfohalobium retbaense DSM 5692, complete genome',\n", |
||
| 8190 | " 'NC_013224.1 Desulfohalobium retbaense DSM 5692 plasmid pDRET01, complete sequence',\n", |
||
| 8191 | " 'NC_009883.1 Rickettsia bellii OSU 85-389, complete genome',\n", |
||
| 8192 | " 'NC_009953.1 Salinispora arenicola CNS-205, complete genome',\n", |
||
| 8193 | " 'NC_009901.1 Shewanella pealeana ATCC 700345, complete genome',\n", |
||
| 8194 | " 'NC_009922.1 Alkaliphilus oremlandii OhILAs, complete genome',\n", |
||
| 8195 | " 'NC_010612.1 Mycobacterium marinum M, complete genome',\n", |
||
| 8196 | " 'NC_010604.1 Mycobacterium marinum M plasmid pMM23, complete sequence',\n", |
||
| 8197 | " 'NC_012125.1 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594, complete genome',\n", |
||
| 8198 | " 'NC_012124.1 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 plasmid pSPCV, complete sequence',\n", |
||
| 8199 | " 'NC_009943.1 Desulfococcus oleovorans Hxd3, complete genome',\n", |
||
| 8200 | " 'NC_010424.1 Candidatus Desulforudis audaxviator MP104C, complete genome',\n", |
||
| 8201 | " 'NC_010611.1 Acinetobacter baumannii ACICU, complete genome',\n", |
||
| 8202 | " 'NC_010605.1 Acinetobacter baumannii ACICU plasmid pACICU1, complete sequence',\n", |
||
| 8203 | " 'NC_010606.1 Acinetobacter baumannii ACICU plasmid pACICU2, complete sequence',\n", |
||
| 8204 | " 'NC_010084.1 Burkholderia multivorans ATCC 17616 chromosome 1, complete sequence',\n", |
||
| 8205 | " 'NC_010086.1 Burkholderia multivorans ATCC 17616 chromosome 2, complete sequence',\n", |
||
| 8206 | " 'NC_010087.1 Burkholderia multivorans ATCC 17616 chromosome 3, complete sequence',\n", |
||
| 8207 | " 'NC_010070.1 Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence',\n", |
||
| 8208 | " 'NC_010103.1 Brucella canis ATCC 23365 chromosome I, complete sequence',\n", |
||
| 8209 | " 'NC_010104.1 Brucella canis ATCC 23365 chromosome II, complete sequence',\n", |
||
| 8210 | " 'NC_012587.1 Sinorhizobium fredii NGR234 chromosome, complete genome',\n", |
||
| 8211 | " 'NC_000914.2 Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence',\n", |
||
| 8212 | " 'NC_012586.1 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence',\n", |
||
| 8213 | " 'NC_010003.1 Petrotoga mobilis SJ95, complete genome',\n", |
||
| 8214 | " 'NC_010067.1 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete genome',\n", |
||
| 8215 | " 'NC_010002.1 Delftia acidovorans SPH-1, complete genome',\n", |
||
| 8216 | " 'NC_010001.1 Lachnoclostridium phytofermentans ISDg, complete genome',\n", |
||
| 8217 | " 'NC_010102.1 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, complete genome',\n", |
||
| 8218 | " 'NC_010742.1 Brucella abortus S19 chromosome 1, complete sequence',\n", |
||
| 8219 | " 'NC_010740.1 Brucella abortus S19 chromosome 2, complete sequence',\n", |
||
| 8220 | " 'NC_010117.1 Coxiella burnetii RSA 331, complete genome',\n", |
||
| 8221 | " 'NC_010115.1 Coxiella burnetii RSA 331 plasmid QpH1, complete sequence',\n", |
||
| 8222 | " 'NC_009997.1 Shewanella baltica OS195, complete genome',\n", |
||
| 8223 | " 'NC_009998.1 Shewanella baltica OS195 plasmid pS19501, complete sequence',\n", |
||
| 8224 | " 'NC_009999.1 Shewanella baltica OS195 plasmid pS19502, complete sequence',\n", |
||
| 8225 | " 'NC_010000.1 Shewanella baltica OS195 plasmid pS19503, complete sequence',\n", |
||
| 8226 | " 'NC_010163.1 Acholeplasma laidlawii PG-8A, complete genome',\n", |
||
| 8227 | " 'NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, complete genome',\n", |
||
| 8228 | " 'NC_003277.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid pSLT, complete sequence',\n", |
||
| 8229 | " 'NC_004631.1 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome',\n", |
||
| 8230 | " 'NC_002944.2 Mycobacterium avium subsp. paratuberculosis str. k10, complete genome',\n", |
||
| 8231 | " 'NC_007332.1 Mycoplasma hyopneumoniae 7448, complete genome',\n", |
||
| 8232 | " 'NC_005957.1 [Bacillus thuringiensis] serovar konkukian str. 97-27 chromosome, complete genome',\n", |
||
| 8233 | " 'NC_006578.1 [Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence',\n", |
||
| 8234 | " 'NC_010816.1 Bifidobacterium longum DJO10A, complete genome',\n", |
||
| 8235 | " 'NC_004252.1 Bifidobacterium longum DJO10A plasmid pDOJH10L, complete sequence',\n", |
||
| 8236 | " 'NC_004253.1 Bifidobacterium longum DJO10A plasmid pDOJH10S, complete sequence',\n", |
||
| 8237 | " 'NC_008800.1 Yersinia enterocolitica subsp. enterocolitica 8081 chromosome, complete genome',\n", |
||
| 8238 | " 'NC_008791.1 Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081, complete sequence',\n", |
||
| 8239 | " 'NC_003272.1 Nostoc sp. PCC 7120 DNA, complete genome',\n", |
||
| 8240 | " 'NC_003276.1 Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome',\n", |
||
| 8241 | " 'NC_003240.1 Nostoc sp. PCC 7120 plasmid pCC7120beta DNA, complete sequence',\n", |
||
| 8242 | " 'NC_003273.1 Nostoc sp. PCC 7120 plasmid pCC7120delta DNA, complete sequence',\n", |
||
| 8243 | " 'NC_003270.1 Nostoc sp. PCC 7120 plasmid pCC7120epsilon DNA, complete sequence',\n", |
||
| 8244 | " 'NC_003267.1 Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence',\n", |
||
| 8245 | " 'NC_003241.1 Nostoc sp. PCC 7120 plasmid pCC7120zeta DNA, complete sequence',\n", |
||
| 8246 | " 'NC_009342.1 Corynebacterium glutamicum R DNA, complete genome',\n", |
||
| 8247 | " 'NC_009343.1 Corynebacterium glutamicum R plasmid pCGR1 DNA, complete sequence',\n", |
||
| 8248 | " 'NC_010729.1 Porphyromonas gingivalis ATCC 33277 DNA, complete genome',\n", |
||
| 8249 | " 'NC_013799.1 Hydrogenobacter thermophilus TK-6 DNA, complete genome',\n", |
||
| 8250 | " 'NC_003450.3 Corynebacterium glutamicum ATCC 13032 chromosome, complete genome',\n", |
||
| 8251 | " 'NC_017382.1 Helicobacter pylori 51, complete genome',\n", |
||
| 8252 | " 'NC_008322.1 Shewanella sp. MR-7, complete genome',\n", |
||
| 8253 | " 'NC_008320.1 Shewanella sp. MR-7, complete sequence',\n", |
||
| 8254 | " 'NC_008321.1 Shewanella sp. MR-4, complete genome',\n", |
||
| 8255 | " 'NC_008345.1 Shewanella frigidimarina NCIMB 400, complete genome',\n", |
||
| 8256 | " 'NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete genome',\n", |
||
| 8257 | " 'NC_008347.1 Maricaulis maris MCS10, complete genome',\n", |
||
| 8258 | " 'NC_008344.1 Nitrosomonas eutropha C91, complete genome',\n", |
||
| 8259 | " 'NC_008341.1 Nitrosomonas eutropha C91 Plasmid1, complete sequence',\n", |
||
| 8260 | " 'NC_008342.1 Nitrosomonas eutropha C91 Plasmid2, complete sequence',\n", |
||
| 8261 | " 'NC_008340.1 Alkalilimnicola ehrlichii MLHE-1, complete genome',\n", |
||
| 8262 | " 'NC_008570.1 Aeromonas hydrophila subsp. hydrophila ATCC 7966 chromosome, complete genome',\n", |
||
| 8263 | " 'NC_008435.1 Rhodopseudomonas palustris BisA53, complete genome',\n", |
||
| 8264 | " 'NC_008563.1 Escherichia coli APEC O1, complete genome',\n", |
||
| 8265 | " 'NC_009837.1 Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence',\n", |
||
| 8266 | " 'NC_009838.1 Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence',\n", |
||
| 8267 | " 'NC_008576.1 Magnetococcus marinus MC-1, complete genome',\n", |
||
| 8268 | " 'NC_011566.1 Shewanella piezotolerans WP3, complete genome',\n", |
||
| 8269 | " 'NC_008536.1 Candidatus Solibacter usitatus Ellin6076, complete genome',\n", |
||
| 8270 | " 'NC_008711.1 Paenarthrobacter aurescens TC1, complete genome',\n", |
||
| 8271 | " 'NC_008712.1 Paenarthrobacter aurescens TC1 plasmid TC1, complete sequence',\n", |
||
| 8272 | " 'NC_008713.1 Paenarthrobacter aurescens TC1 plasmid TC2, complete sequence',\n", |
||
| 8273 | " 'NC_008554.1 Syntrophobacter fumaroxidans MPOB, complete genome',\n", |
||
| 8274 | " 'NC_008595.1 Mycobacterium avium 104, complete genome',\n", |
||
| 8275 | " 'NC_008596.1 Mycobacterium smegmatis str. MC2 155 chromosome, complete genome',\n", |
||
| 8276 | " 'NC_008578.1 Acidothermus cellulolyticus 11B, complete genome',\n", |
||
| 8277 | " 'NC_008609.1 Pelobacter propionicus DSM 2379, complete genome',\n", |
||
| 8278 | " 'NC_008607.1 Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence',\n", |
||
| 8279 | " 'NC_008608.1 Pelobacter propionicus DSM 2379 plasmid pPRO2, complete sequence',\n", |
||
| 8280 | " 'NC_008600.1 Bacillus thuringiensis str. Al Hakam, complete genome',\n", |
||
| 8281 | " 'NC_008598.1 Bacillus thuringiensis str. Al Hakam, plasmid pALH1, complete sequence',\n", |
||
| 8282 | " 'NC_013928.1 Streptococcus mutans NN2025 DNA, complete genome',\n", |
||
| 8283 | " 'NC_014215.1 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome',\n", |
||
| 8284 | " 'NC_013861.1 Legionella longbeachae NSW150, complete genome',\n", |
||
| 8285 | " 'NC_014544.1 Legionella longbeachae NSW150 plasmid pLLO',\n", |
||
| 8286 | " 'NC_012925.1 Streptococcus suis P1/7 complete genome',\n", |
||
| 8287 | " 'NC_013949.1 Helicobacter mustelae 12198 complete genome',\n", |
||
| 8288 | " 'NC_003062.2 Agrobacterium fabrum str. C58 chromosome circular, complete sequence',\n", |
||
| 8289 | " 'NC_003063.2 Agrobacterium fabrum str. C58 chromosome linear, complete sequence',\n", |
||
| 8290 | " 'NC_003064.2 Agrobacterium fabrum str. C58 plasmid At, complete sequence',\n", |
||
| 8291 | " 'NC_003065.3 Agrobacterium fabrum str. C58 plasmid Ti, complete sequence',\n", |
||
| 8292 | " 'NC_007761.1 Rhizobium etli CFN 42, complete genome',\n", |
||
| 8293 | " 'NC_007762.1 Rhizobium etli CFN 42 plasmid p42a, complete sequence',\n", |
||
| 8294 | " 'NC_007763.1 Rhizobium etli CFN 42 plasmid p42b, complete sequence',\n", |
||
| 8295 | " 'NC_007764.1 Rhizobium etli CFN 42 plasmid p42c, complete sequence',\n", |
||
| 8296 | " 'NC_007765.1 Rhizobium etli CFN 42 plasmid p42e, complete sequence',\n", |
||
| 8297 | " 'NC_007766.1 Rhizobium etli CFN 42 plasmid p42f, complete sequence',\n", |
||
| 8298 | " 'NC_004041.2 Rhizobium etli CFN 42 plasmid symbiotic plasmid p42d, complete sequence',\n", |
||
| 8299 | " 'NC_014148.1 Planctopirus limnophila DSM 3776, complete genome',\n", |
||
| 8300 | " 'NC_014149.1 Planctopirus limnophila DSM 3776 plasmid pPLIM01, complete sequence',\n", |
||
| 8301 | " 'NC_014212.1 Meiothermus silvanus DSM 9946, complete genome',\n", |
||
| 8302 | " 'NC_014213.1 Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence',\n", |
||
| 8303 | " 'NC_014214.1 Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence',\n", |
||
| 8304 | " 'NC_014171.1 Bacillus thuringiensis BMB171, complete genome',\n", |
||
| 8305 | " 'NC_014172.1 Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence',\n", |
||
| 8306 | " 'NC_014216.1 Desulfurivibrio alkaliphilus AHT2, complete genome',\n", |
||
| 8307 | " 'NC_014158.1 Tsukamurella paurometabola DSM 20162, complete genome',\n", |
||
| 8308 | " 'NC_014159.1 Tsukamurella paurometabola DSM 20162 plasmid pTpau01, complete sequence',\n", |
||
| 8309 | " 'NC_014166.1 Arcobacter nitrofigilis DSM 7299, complete genome',\n", |
||
| 8310 | " 'NC_014147.1 Moraxella catarrhalis BBH18, complete genome',\n", |
||
| 8311 | " 'NC_014100.1 Caulobacter segnis ATCC 21756, complete genome',\n", |
||
| 8312 | " 'NC_014169.1 Bifidobacterium longum subsp. longum JDM301, complete genome',\n", |
||
| 8313 | " 'NC_017297.1 Clostridium botulinum F str. 230613, complete genome',\n", |
||
| 8314 | " 'NC_017298.1 Clostridium botulinum F str. 230613 plasmid pCBF, complete sequence',\n", |
||
| 8315 | " 'NC_014218.1 Arcanobacterium haemolyticum DSM 20595, complete genome',\n", |
||
| 8316 | " 'NC_016582.1 Streptomyces bingchenggensis BCW-1, complete genome',\n", |
||
| 8317 | " 'NC_014220.1 Syntrophothermus lipocalidus DSM 12680, complete genome',\n", |
||
| 8318 | " 'NC_017633.1 Escherichia coli ETEC H10407, complete genome',\n", |
||
| 8319 | " 'NC_017721.1 Escherichia coli ETEC H10407 p52 plasmid',\n", |
||
| 8320 | " 'NC_017723.1 Escherichia coli ETEC H10407 p58 plasmid',\n", |
||
| 8321 | " 'NC_017722.1 Escherichia coli ETEC H10407 p666 plasmid',\n", |
||
| 8322 | " 'NC_017724.1 Escherichia coli ETEC H10407 p948 plasmid',\n", |
||
| 8323 | " 'NC_017441.1 Chlamydia trachomatis Sweden2, complete genome',\n", |
||
| 8324 | " 'NC_017465.1 Lactobacillus fermentum CECT 5716, complete genome',\n", |
||
| 8325 | " 'NC_018588.1 Listeria monocytogenes strain SLCC2372, serotype 1/2c',\n", |
||
| 8326 | " 'NC_018889.1 Listeria monocytogenes serotype 1-2c str. SLCC2372 plasmid pLM1-2cUG1 complete sequence',\n", |
||
| 8327 | " 'NC_016776.1 Bacteroides fragilis 638R genome',\n", |
||
| 8328 | " 'NC_016810.1 Salmonella enterica subsp. enterica serovar Typhimurium SL1344 complete genome',\n", |
||
| 8329 | " 'NC_017718.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pCol1B9_SL1344 complete sequence',\n", |
||
| 8330 | " 'NC_017719.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pRSF1010_SL1344 complete sequence',\n", |
||
| 8331 | " 'NC_017720.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pSLT_SL1344 complete sequence',\n", |
||
| 8332 | " 'NC_016809.1 Haemophilus influenzae 10810 genome',\n", |
||
| 8333 | " 'NC_015964.1 Haemophilus parainfluenzae T3T1 complete genome',\n", |
||
| 8334 | " 'NC_016620.1 Bacteriovorax marinus SJ genome',\n", |
||
| 8335 | " 'NC_019100.1 Bacteriovorax marinus SJ plasmid pBMS1 complete sequence',\n", |
||
| 8336 | " 'NC_017593.1 Streptococcus pneumoniae INV200 genome',\n", |
||
| 8337 | " 'NC_017592.1 Streptococcus pneumoniae OXC141 complete genome',\n", |
||
| 8338 | " 'NC_017591.1 Streptococcus pneumoniae INV104 genome',\n", |
||
| 8339 | " 'NC_021006.1 Streptococcus pneumoniae SPN034156 draft genome',\n", |
||
| 8340 | " 'NC_021028.1 Streptococcus pneumoniae SPN034183 draft genome',\n", |
||
| 8341 | " 'NC_021026.1 Streptococcus pneumoniae SPN994038 draft genome',\n", |
||
| 8342 | " 'NC_021005.1 Streptococcus pneumoniae SPN994039 draft genome',\n", |
||
| 8343 | " 'NC_021003.1 Streptococcus pneumoniae SPN032672 draft genome',\n", |
||
| 8344 | " 'NC_021004.1 Streptococcus pneumoniae SPN033038 draft genome',\n", |
||
| 8345 | " 'NC_017519.1 Mycoplasma hyorhinis MCLD, complete genome',\n", |
||
| 8346 | " 'NC_015428.1 Lactobacillus buchneri NRRL B-30929, complete genome',\n", |
||
| 8347 | " 'NC_015420.1 Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete sequence',\n", |
||
| 8348 | " 'NC_015429.1 Lactobacillus buchneri NRRL B-30929 plasmid pLBUC02, complete sequence',\n", |
||
| 8349 | " 'NC_015421.1 Lactobacillus buchneri NRRL B-30929 plasmid pLBUC03, complete sequence',\n", |
||
| 8350 | " 'NC_023030.2 Mycoplasma gallisepticum S6, complete genome',\n", |
||
| 8351 | " 'NC_015638.1 Lacinutrix sp. 5H-3-7-4, complete genome',\n", |
||
| 8352 | " 'NC_015497.1 Glaciecola sp. 4H-3-7+YE-5, complete genome',\n", |
||
| 8353 | " 'NC_015498.1 Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence',\n", |
||
| 8354 | " 'NC_015496.1 Dokdonia sp. 4H-3-7-5, complete genome',\n", |
||
| 8355 | " 'NC_015501.1 Porphyromonas asaccharolytica DSM 20707, complete genome',\n", |
||
| 8356 | " 'NC_018080.1 Pseudomonas aeruginosa DK2, complete genome',\n", |
||
| 8357 | " 'NC_018081.1 Enterococcus hirae ATCC 9790, complete genome',\n", |
||
| 8358 | " 'NC_015845.1 Enterococcus hirae ATCC 9790 plasmid pTG9790, complete sequence',\n", |
||
| 8359 | " 'NZ_CP010978.1 Pelosinus fermentans JBW45, complete genome',\n", |
||
| 8360 | " 'NC_018089.1 Streptococcus mutans GS-5, complete genome',\n", |
||
| 8361 | " 'NZ_CP015923.1 Salmonella enterica subsp. enterica serovar Newport str. Levine 1, complete genome',\n", |
||
| 8362 | " 'NZ_CP015924.1 Salmonella enterica subsp. enterica serovar Newport str. Levine 15, complete genome',\n", |
||
| 8363 | " 'NZ_CP015876.1 Pseudomonas putida SJTE-1, complete genome',\n", |
||
| 8364 | " 'NZ_CP015877.1 Pseudomonas aeruginosa SJTD-1, complete genome',\n", |
||
| 8365 | " 'NZ_CP010283.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21550, complete genome',\n", |
||
| 8366 | " 'NZ_CP009564.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21550 plasmid pCVM21550, complete sequence',\n", |
||
| 8367 | " 'NZ_CP010281.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22513, complete genome',\n", |
||
| 8368 | " 'NZ_CP009562.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22513 plasmid pCVM22513, complete sequence',\n", |
||
| 8369 | " 'NZ_CP010282.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21538, complete genome',\n", |
||
| 8370 | " 'NZ_CP009563.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21538 plasmid pCVM21538, complete sequence',\n", |
||
| 8371 | " 'NZ_CP010279.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22425, complete genome',\n", |
||
| 8372 | " 'NZ_CP009560.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22425 plasmid pCVM22425, complete sequence',\n", |
||
| 8373 | " 'NZ_CP009561.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N18486, complete genome',\n", |
||
| 8374 | " 'NZ_CP010284.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543, complete genome',\n", |
||
| 8375 | " 'NZ_CP009570.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 plasmid pCVMN1543, complete sequence',\n", |
||
| 8376 | " 'NZ_CP010280.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462, complete genome',\n", |
||
| 8377 | " 'NZ_CP009567.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCFSAN000934_02, complete sequence',\n", |
||
| 8378 | " 'NZ_CP009568.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCFSAN000934_03, complete sequence',\n", |
||
| 8379 | " 'NZ_CP009566.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCVM22462, complete sequence',\n", |
||
| 8380 | " 'NC_018108.1 Taylorella equigenitalis ATCC 35865, complete genome',\n", |
||
| 8381 | " 'NC_018106.1 Klebsiella michiganensis E718, complete sequence',\n", |
||
| 8382 | " 'NC_021501.1 Klebsiella michiganensis strain E718 plasmid pKOX_NDM1, complete sequence',\n", |
||
| 8383 | " 'NC_018107.1 Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence',\n", |
||
| 8384 | " 'NC_016948.1 Mycobacterium intracellulare MOTT-64, complete genome',\n", |
||
| 8385 | " 'NC_016946.1 Mycobacterium intracellulare ATCC 13950, complete genome',\n", |
||
| 8386 | " 'NC_016947.1 Mycobacterium intracellulare MOTT-02, complete genome',\n", |
||
| 8387 | " 'NC_017049.1 Rickettsia prowazekii str. Chernikova, complete genome',\n", |
||
| 8388 | " 'NZ_CP007066.1 Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence',\n", |
||
| 8389 | " 'NZ_CP007064.1 Fusobacterium nucleatum subsp. vincentii 3_1_27 chromosome 1, complete sequence',\n", |
||
| 8390 | " 'NZ_CP007065.1 Fusobacterium nucleatum subsp. vincentii 3_1_27 chromosome 2, complete sequence',\n", |
||
| 8391 | " 'NZ_CP008742.1 Pseudomonas savastanoi pv. savastanoi NCPPB 3335, complete genome',\n", |
||
| 8392 | " 'NC_015678.1 Streptococcus parasanguinis ATCC 15912, complete genome',\n", |
||
| 8393 | " 'NC_014643.1 Rothia dentocariosa ATCC 17931, complete genome',\n", |
||
| 8394 | " 'NC_014618.1 Enterobacter lignolyticus SCF1, complete genome',\n", |
||
| 8395 | " 'NC_014625.1 Ketogulonicigenium vulgare Y25, complete genome',\n", |
||
| 8396 | " 'NC_014621.1 Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence',\n", |
||
| 8397 | " 'NC_014626.1 Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence',\n", |
||
| 8398 | " 'NC_017161.1 Hydrogenobacter thermophilus TK-6, complete genome',\n", |
||
| 8399 | " 'NC_014616.1 Bifidobacterium bifidum S17, complete genome',\n", |
||
| 8400 | " 'NC_014622.2 Paenibacillus polymyxa SC2, complete genome',\n", |
||
| 8401 | " 'NC_014628.2 Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence',\n", |
||
| 8402 | " 'NC_017455.1 Halanaerobium praevalens DSM 2228, complete genome',\n", |
||
| 8403 | " 'NC_014623.1 Stigmatella aurantiaca DW4/3-1, complete genome',\n", |
||
| 8404 | " 'NC_014632.1 Ilyobacter polytropus DSM 2926, complete genome',\n", |
||
| 8405 | " 'NC_014633.1 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence',\n", |
||
| 8406 | " 'NC_014634.1 Ilyobacter polytropus DSM 2926 plasmid pILYOP02, complete sequence',\n", |
||
| 8407 | " 'NC_017451.1 Haemophilus influenzae R2866, complete genome',\n", |
||
| 8408 | " 'NC_017452.1 Haemophilus influenzae R2846, complete genome',\n", |
||
| 8409 | " 'NC_015174.1 Rubinisphaera brasiliensis DSM 5305, complete genome',\n", |
||
| 8410 | " 'NC_015214.1 Lactobacillus amylovorus strain 30SC, complete genome',\n", |
||
| 8411 | " 'NC_015213.1 Lactobacillus amylovorus strain 30SC plasmid pRKC30SC1, complete sequence',\n", |
||
| 8412 | " 'NC_015218.1 Lactobacillus amylovorus strain 30SC plasmid pRKC30SC2, complete sequence',\n", |
||
| 8413 | " 'NC_017569.1 Riemerella anatipestifer RA-GD, complete genome',\n", |
||
| 8414 | " 'NC_017295.1 Clostridium acetobutylicum EA 2018, complete genome',\n", |
||
| 8415 | " 'NC_017296.1 Clostridium acetobutylicum EA 2018 EA2018plasmid, complete sequence',\n", |
||
| 8416 | " 'NC_015470.1 Chlamydia psittaci 6BC, complete genome',\n", |
||
| 8417 | " 'NC_015217.1 Chlamydia psittaci 6BC plasmid p6BC, complete sequence',\n", |
||
| 8418 | " 'NZ_CP019725.1 Xanthomonas perforans 91-118 chromosome, complete genome',\n", |
||
| 8419 | " 'NC_015224.1 Yersinia enterocolitica subsp. palearctica 105.5R(r), complete genome',\n", |
||
| 8420 | " 'NC_015475.1 Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence',\n", |
||
| 8421 | " 'NC_017374.1 Helicobacter pylori 2017, complete genome',\n", |
||
| 8422 | " 'NC_017381.1 Helicobacter pylori 2018, complete genome',\n", |
||
| 8423 | " 'NZ_CP017125.1 Mycoplasma capricolum subsp. capripneumoniae M1601 chromosome, complete genome',\n", |
||
| 8424 | " 'NC_015508.1 Agrobacterium sp. H13-3 linear chromosome, complete sequence',\n", |
||
| 8425 | " 'NC_015183.1 Agrobacterium sp. H13-3 circular chromosome, complete sequence',\n", |
||
| 8426 | " 'NC_015184.1 Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence',\n", |
||
| 8427 | " 'NC_017486.1 Lactococcus lactis subsp. lactis CV56, complete genome',\n", |
||
| 8428 | " 'NC_017483.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56A, complete sequence',\n", |
||
| 8429 | " 'NC_017487.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56B, complete sequence',\n", |
||
| 8430 | " 'NC_017484.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56C, complete sequence',\n", |
||
| 8431 | " 'NC_017485.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56D, complete sequence',\n", |
||
| 8432 | " 'NC_017488.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56E, complete sequence',\n", |
||
| 8433 | " 'NC_017244.1 Brucella melitensis M28 chromosome 1, complete sequence',\n", |
||
| 8434 | " 'NC_017245.1 Brucella melitensis M28 chromosome 2, complete sequence',\n", |
||
| 8435 | " 'NC_015259.1 Polymorphum gilvum SL003B-26A1, complete genome',\n", |
||
| 8436 | " 'NC_015258.1 Polymorphum gilvum SL003B-26A1 plasmid pSL003B, complete sequence',\n", |
||
| 8437 | " 'NC_015277.1 Sphingobacterium sp. 21, complete genome',\n", |
||
| 8438 | " 'NC_016783.1 Corynebacterium diphtheriae INCA 402, complete genome',\n", |
||
| 8439 | " 'NC_016800.1 Corynebacterium diphtheriae BH8, complete genome',\n", |
||
| 8440 | " 'NC_017033.1 Frateuria aurantia DSM 6220, complete genome',\n", |
||
| 8441 | " 'NC_019960.1 Prevotella dentalis DSM 3688 chromosome 1, complete sequence',\n", |
||
| 8442 | " 'NC_019968.1 Prevotella dentalis DSM 3688 chromosome 2, complete sequence',\n", |
||
| 8443 | " 'NC_019961.1 Prevotella dentalis DSM 3688 plasmid pPREDE01, complete sequence',\n", |
||
| 8444 | " 'NC_019969.1 Prevotella dentalis DSM 3688 plasmid pPREDE02, complete sequence',\n", |
||
| 8445 | " 'NC_019892.1 Singulisphaera acidiphila DSM 18658, complete genome',\n", |
||
| 8446 | " 'NC_019893.1 Singulisphaera acidiphila DSM 18658 plasmid pSINAC01, complete sequence',\n", |
||
| 8447 | " 'NC_019894.1 Singulisphaera acidiphila DSM 18658 plasmid pSINAC02, complete sequence',\n", |
||
| 8448 | " 'NC_019895.1 Singulisphaera acidiphila DSM 18658 plasmid pSINAC03, complete sequence',\n", |
||
| 8449 | " 'NC_017098.1 Spirochaeta africana DSM 8902, complete genome',\n", |
||
| 8450 | " 'NC_017770.1 Solitalea canadensis DSM 3403, complete genome',\n", |
||
| 8451 | " 'NC_016787.1 Corynebacterium diphtheriae HC03, complete genome',\n", |
||
| 8452 | " 'NC_020272.1 Bacillus amyloliquefaciens IT-45, complete genome',\n", |
||
| 8453 | " 'NC_020273.1 Bacillus amyloliquefaciens IT-45 plasmid pBA45-1, whole genome shotgun sequence',\n", |
||
| 8454 | " 'NC_021171.1 Bacillus sp. 1NLA3E, complete genome',\n", |
||
| 8455 | " 'NZ_CP007053.1 Opitutaceae bacterium TAV5, complete genome',\n", |
||
| 8456 | " 'NZ_CP007054.1 Opitutaceae bacterium TAV5 plasmid, complete sequence',\n", |
||
| 8457 | " 'NC_016745.1 Oceanimonas sp. GK1, complete genome',\n", |
||
| 8458 | " 'NC_016746.1 Oceanimonas sp. GK1 plasmid pOCEGK01, complete sequence',\n", |
||
| 8459 | " 'NC_016747.1 Oceanimonas sp. GK1 plasmid pOCEGK02, complete sequence',\n", |
||
| 8460 | " 'NZ_CP007035.1 Niabella soli DSM 19437, complete genome',\n", |
||
| 8461 | " 'NC_019903.1 Desulfitobacterium dichloroeliminans LMG P-21439, complete genome',\n", |
||
| 8462 | " 'NC_018017.1 Desulfitobacterium dehalogenans ATCC 51507, complete genome',\n", |
||
| 8463 | " 'NC_016791.1 Clostridium sp. BNL1100, complete genome',\n", |
||
| 8464 | " 'NZ_CP006932.1 Candidatus Hepatoplasma crinochetorum Av, complete genome',\n", |
||
| 8465 | " 'NZ_CP006829.1 Thalassolituus oleivorans R6-15, complete genome',\n", |
||
| 8466 | " 'NZ_CP007122.1 Lactobacillus paracasei N1115, complete genome',\n", |
||
| 8467 | " 'NZ_CP007123.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 8468 | " 'NZ_CP007124.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 8469 | " 'NZ_CP007125.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 8470 | " 'NZ_CP007126.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 8471 | " 'NC_022568.1 Listeria monocytogenes EGD, complete genome',\n", |
||
| 8472 | " 'NZ_CP007244.1 Bacillus amyloliquefaciens subsp. plantarum TrigoCor1448, complete genome',\n", |
||
| 8473 | " 'NZ_CP006742.1 Bacillus anthracis str. SVA11, complete genome',\n", |
||
| 8474 | " 'NZ_CP006743.1 Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence',\n", |
||
| 8475 | " 'NZ_CP006744.1 Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence',\n", |
||
| 8476 | " 'NZ_CP007183.1 Campylobacter coli RM1875, complete genome',\n", |
||
| 8477 | " 'NZ_CP007185.1 Campylobacter coli RM1875 plasmid pRM1875_2.4kb, complete sequence',\n", |
||
| 8478 | " 'NZ_CP007186.1 Campylobacter coli RM1875 plasmid pRM1875_3.3kb, complete sequence',\n", |
||
| 8479 | " 'NZ_CP007187.1 Campylobacter coli RM1875 plasmid pRM1875_3.4kbp, complete sequence',\n", |
||
| 8480 | " 'NZ_CP007184.1 Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence',\n", |
||
| 8481 | " 'NZ_CP007181.1 Campylobacter coli RM4661, complete genome',\n", |
||
| 8482 | " 'NZ_CP007182.1 Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence',\n", |
||
| 8483 | " 'NZ_CP007179.1 Campylobacter coli RM5611, complete genome',\n", |
||
| 8484 | " 'NZ_CP007180.1 Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence',\n", |
||
| 8485 | " 'NZ_CP004368.1 Burkholderia pseudomallei MSHR520 chromosome 1, complete sequence',\n", |
||
| 8486 | " 'NZ_CP004369.1 Burkholderia pseudomallei MSHR520 chromosome 2, complete sequence',\n", |
||
| 8487 | " 'NZ_CP004373.1 Gluconobacter oxydans DSM 3504, complete genome',\n", |
||
| 8488 | " 'NZ_CP006571.1 Chlamydia avium 10DC88, complete genome',\n", |
||
| 8489 | " 'NZ_CP006572.1 Chlamydia avium 10DC88 plasmid p10DC88, complete sequence',\n", |
||
| 8490 | " 'NZ_CP007410.1 Pseudomonas brassicacearum strain DF41, complete genome',\n", |
||
| 8491 | " 'NZ_CP007436.1 Bacillus pumilus strain MTCC B6033, complete genome',\n", |
||
| 8492 | " 'NZ_CP007441.1 Pseudomonas stutzeri strain 28a24, complete genome',\n", |
||
| 8493 | " 'NC_022904.2 Pandoraea pnomenusa 3kgm, complete genome',\n", |
||
| 8494 | " 'NC_022198.1 Corynebacterium argentoratense DSM 44202, complete genome',\n", |
||
| 8495 | " 'NC_022117.1 Chlamydia trachomatis strain F/1-93, complete genome',\n", |
||
| 8496 | " 'NC_022118.1 Chlamydia trachomatis strain F/6-94, complete genome',\n", |
||
| 8497 | " 'NC_022873.1 Bacillus thuringiensis YBT-1518, complete genome',\n", |
||
| 8498 | " 'NC_020124.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0228, complete sequence',\n", |
||
| 8499 | " 'NC_022874.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0229, complete sequence',\n", |
||
| 8500 | " 'NC_022875.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0230, complete sequence',\n", |
||
| 8501 | " 'NC_022876.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0231, complete sequence',\n", |
||
| 8502 | " 'NC_022877.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence',\n", |
||
| 8503 | " 'NC_022882.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence',\n", |
||
| 8504 | " 'NC_022886.1 Helicobacter pylori BM012A, complete genome',\n", |
||
| 8505 | " 'NC_022911.1 Helicobacter pylori BM012S, complete genome',\n", |
||
| 8506 | " 'NZ_CP017152.1 Acinetobacter baumannii DU202, complete genome',\n", |
||
| 8507 | " 'NZ_CP010979.1 Pseudomonas putida S13.1.2, complete genome',\n", |
||
| 8508 | " 'NC_022900.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023, complete genome',\n", |
||
| 8509 | " 'NC_022901.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 8510 | " 'NC_022913.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 8511 | " 'NC_022902.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 8512 | " 'NC_022903.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 8513 | " 'NC_022910.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 8514 | " 'NC_022909.1 Lactobacillus johnsonii N6.2, complete genome',\n", |
||
| 8515 | " 'NZ_CP009365.1 Pseudomonas soli strain SJ10, complete genome',\n", |
||
| 8516 | " 'NC_022964.1 Dehalococcoides mccartyi GY50, complete genome',\n", |
||
| 8517 | " 'NZ_HG738867.1 Escherichia coli str. K-12 substr. MC4100 complete genome',\n", |
||
| 8518 | " 'NC_022535.1 Rhizobium sp. IRBG74 circular chromosome, complete genome',\n", |
||
| 8519 | " 'NC_022545.1 Rhizobium sp. IRBG74 linear chromosome, complete genome',\n", |
||
| 8520 | " 'NC_022536.1 Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence',\n", |
||
| 8521 | " 'NZ_LN794217.1 Rickettsia monacensis, strain IrR/Munich, complete genome',\n", |
||
| 8522 | " 'NZ_CP011913.1 Corynebacterium ulcerans FRC58, complete genome',\n", |
||
| 8523 | " 'NC_019896.1 Bacillus subtilis subsp. subtilis str. BSP1, complete genome',\n", |
||
| 8524 | " 'NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome',\n", |
||
| 8525 | " 'NC_019908.1 Brachyspira pilosicoli P43/6/78, complete genome',\n", |
||
| 8526 | " 'NC_019904.1 Echinicola vietnamensis DSM 17526, complete genome',\n", |
||
| 8527 | " 'NC_019905.1 Pseudomonas putida HB3267, complete genome',\n", |
||
| 8528 | " 'NC_019906.1 Pseudomonas putida HB3267 plasmid pPC9, complete sequence',\n", |
||
| 8529 | " 'NC_019907.1 Liberibacter crescens BT-1, complete genome',\n", |
||
| 8530 | " 'NC_019940.1 Thioflavicoccus mobilis 8321, complete genome',\n", |
||
| 8531 | " 'NC_019941.1 Thioflavicoccus mobilis 8321 plasmid pTHIMO01, complete sequence',\n", |
||
| 8532 | " 'NC_019936.1 Pseudomonas stutzeri RCH2, complete genome',\n", |
||
| 8533 | " 'NC_019937.1 Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence',\n", |
||
| 8534 | " 'NC_019938.1 Pseudomonas stutzeri RCH2 plasmid pPSEST02, complete sequence',\n", |
||
| 8535 | " 'NC_019939.1 Pseudomonas stutzeri RCH2 plasmid pPSEST03, complete sequence',\n", |
||
| 8536 | " 'NC_019955.1 Vibrio parahaemolyticus BB22OP chromosome 1, complete sequence',\n", |
||
| 8537 | " 'NC_019971.1 Vibrio parahaemolyticus BB22OP chromosome 2, complete sequence',\n", |
||
| 8538 | " 'NC_019970.1 Thermoanaerobacterium thermosaccharolyticum M0795, complete genome',\n", |
||
| 8539 | " 'NC_019956.1 Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence',\n", |
||
| 8540 | " 'NC_019966.1 Mycobacterium sp. JS623, complete genome',\n", |
||
| 8541 | " 'NC_019957.1 Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence',\n", |
||
| 8542 | " 'NC_019958.1 Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence',\n", |
||
| 8543 | " 'NC_019959.1 Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence',\n", |
||
| 8544 | " 'NC_019978.1 Halobacteroides halobius DSM 5150, complete genome',\n", |
||
| 8545 | " 'NC_019673.1 Saccharothrix espanaensis DSM 44229 complete genome',\n", |
||
| 8546 | " 'NC_019949.1 Mycoplasma cynos C142 complete genome',\n", |
||
| 8547 | " 'NC_019954.2 Tepidanaerobacter acetatoxydans Re1 complete genome',\n", |
||
| 8548 | " 'NZ_CP007528.1 Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0968, complete genome',\n", |
||
| 8549 | " 'NZ_CP007529.1 Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0968 plasmid00, complete sequence',\n", |
||
| 8550 | " 'NZ_CP012347.1 Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120, complete genome',\n", |
||
| 8551 | " 'NZ_CP012348.1 Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence',\n", |
||
| 8552 | " 'NZ_CP007255.1 Rhodococcus erythropolis R138, complete genome',\n", |
||
| 8553 | " 'NZ_CP007256.1 Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence',\n", |
||
| 8554 | " 'NZ_CP007257.1 Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence',\n", |
||
| 8555 | " 'NZ_CP015880.1 Ensifer adhaerens strain Casida A chromosome, complete genome',\n", |
||
| 8556 | " 'NZ_CP015881.1 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence',\n", |
||
| 8557 | " 'NZ_CP015882.1 Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence',\n", |
||
| 8558 | " 'NZ_CP007691.1 Brucella suis bv. 2 strain PT09143 chromosome I, complete sequence',\n", |
||
| 8559 | " 'NZ_CP007692.1 Brucella suis bv. 2 strain PT09143 chromosome II, complete sequence',\n", |
||
| 8560 | " 'NZ_CP007693.1 Brucella suis bv. 2 strain PT09172 chromosome I, complete sequence',\n", |
||
| 8561 | " 'NZ_CP007694.1 Brucella suis bv. 2 strain PT09172 chromosome II, complete sequence',\n", |
||
| 8562 | " 'NZ_CP007697.1 Brucella suis bv. 2 strain Bs364CITA chromosome I, complete sequence',\n", |
||
| 8563 | " 'NZ_CP007698.1 Brucella suis bv. 2 strain Bs364CITA chromosome II, complete sequence',\n", |
||
| 8564 | " 'NZ_CP007720.1 Brucella suis bv. 2 strain Bs396CITA chromosome I, complete sequence',\n", |
||
| 8565 | " 'NZ_CP007721.1 Brucella suis bv. 2 strain Bs396CITA chromosome II, complete sequence',\n", |
||
| 8566 | " 'NZ_CP007805.1 Haemophilus influenzae CGSHiCZ412602, complete genome',\n", |
||
| 8567 | " 'NZ_CP007803.1 Mycobacterium tuberculosis K, complete genome',\n", |
||
| 8568 | " 'NZ_CP006696.1 Xylella fastidiosa subsp. sandyi Ann-1, complete genome',\n", |
||
| 8569 | " 'NZ_CP006697.1 Xylella fastidiosa subsp. sandyi Ann-1 plasmid unnamed1, complete sequence',\n", |
||
| 8570 | " 'NZ_CP006740.1 Xylella fastidiosa MUL0034, complete genome',\n", |
||
| 8571 | " 'NZ_CP006739.1 Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence',\n", |
||
| 8572 | " 'NZ_CP006986.1 Rhizobium sp. IE4771 chromosome, complete genome',\n", |
||
| 8573 | " 'NZ_CP006987.1 Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence',\n", |
||
| 8574 | " 'NZ_CP006988.1 Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence',\n", |
||
| 8575 | " 'NZ_CP006989.1 Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence',\n", |
||
| 8576 | " 'NZ_CP006990.1 Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence',\n", |
||
| 8577 | " 'NZ_CP006991.1 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence',\n", |
||
| 8578 | " 'NZ_CP008696.1 Pseudomonas chlororaphis strain PA23, complete genome',\n", |
||
| 8579 | " 'NZ_CP006819.1 Streptococcus thermophilus ASCC 1275, complete genome',\n", |
||
| 8580 | " 'NZ_CP007695.1 Brucella suis bv. 2 strain Bs143CITA chromosome I, complete sequence',\n", |
||
| 8581 | " 'NZ_CP007696.1 Brucella suis bv. 2 strain Bs143CITA chromosome II, complete sequence',\n", |
||
| 8582 | " 'NC_020533.1 Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 16035',\n", |
||
| 8583 | " 'NC_020534.1 Staphylococcus aureus subsp. aureus ST228 plasmid pI4T8 complete sequence, isolate 16035',\n", |
||
| 8584 | " 'NC_020566.1 Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 16125',\n", |
||
| 8585 | " 'NC_020535.1 Staphylococcus aureus subsp. aureus ST228 plasmid pI5S5 complete sequence, isolate 16125',\n", |
||
| 8586 | " 'NC_020568.1 Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 18583',\n", |
||
| 8587 | " 'NC_020539.1 Staphylococcus aureus subsp. aureus ST228 plasmid pI8T7 complete sequence, isolate 18583',\n", |
||
| 8588 | " 'NC_021173.1 Burkholderia thailandensis MSMB121 chromosome 1, complete sequence',\n", |
||
| 8589 | " 'NC_021174.1 Burkholderia thailandensis MSMB121 chromosome 2, complete sequence',\n", |
||
| 8590 | " 'NC_021176.1 Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete genome',\n", |
||
| 8591 | " 'NC_021175.1 Streptococcus cristatus AS 1.3089, complete genome',\n", |
||
| 8592 | " 'NC_021177.1 Streptomyces fulvissimus DSM 40593, complete sequence',\n", |
||
| 8593 | " 'NZ_CP010539.1 Mycoplasma pneumoniae 19294, complete genome',\n", |
||
| 8594 | " 'NC_021182.1 Clostridium pasteurianum BC1, complete genome',\n", |
||
| 8595 | " 'NC_021183.1 Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence',\n", |
||
| 8596 | " 'NC_021181.2 Lactobacillus acidophilus La-14, complete genome',\n", |
||
| 8597 | " 'NC_021194.1 Mycobacterium tuberculosis EAI5/NITR206, complete genome',\n", |
||
| 8598 | " 'NC_021191.1 Actinoplanes sp. N902-109, complete genome',\n", |
||
| 8599 | " 'NC_021200.1 Mycobacterium avium subsp. paratuberculosis MAP4, complete genome',\n", |
||
| 8600 | " 'NC_021213.1 Streptococcus suis TL13, complete genome',\n", |
||
| 8601 | " 'NZ_CP009144.1 Sinorhizobium meliloti strain RMO17, complete genome',\n", |
||
| 8602 | " 'NZ_CP009145.1 Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence',\n", |
||
| 8603 | " 'NZ_CP009146.1 Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence',\n", |
||
| 8604 | " 'NZ_CP009215.1 Corynebacterium ureicelerivorans strain IMMIB RIV-2301, complete genome',\n", |
||
| 8605 | " 'NZ_CP009216.1 Corynebacterium ureicelerivorans strain IMMIB RIV-2301 plasmid unnamed, complete sequence',\n", |
||
| 8606 | " 'NZ_CP008853.1 Bacillus anthracis strain Cvac02, complete genome',\n", |
||
| 8607 | " 'NZ_CP008855.1 Bacillus sp. X1(2014), complete genome',\n", |
||
| 8608 | " 'NZ_CP009278.1 Sphingobacterium sp. ML3W, complete genome',\n", |
||
| 8609 | " 'NZ_CP007607.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520, complete genome',\n", |
||
| 8610 | " 'NZ_CP007612.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB11, complete sequence',\n", |
||
| 8611 | " 'NZ_CP007608.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB2062, complete sequence',\n", |
||
| 8612 | " 'NZ_CP007615.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence',\n", |
||
| 8613 | " 'NZ_CP007616.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence',\n", |
||
| 8614 | " 'NZ_CP007613.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB69, complete sequence',\n", |
||
| 8615 | " 'NZ_CP007609.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB7921, complete sequence',\n", |
||
| 8616 | " 'NZ_CP007610.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB8240, complete sequence',\n", |
||
| 8617 | " 'NZ_CP007611.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB8513, complete sequence',\n", |
||
| 8618 | " 'NZ_CP007614.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence',\n", |
||
| 8619 | " 'NZ_CP003424.1 Serratia sp. SCBI, complete genome',\n", |
||
| 8620 | " 'NZ_CP003425.1 Serratia sp. SCBI plasmid SCBI_Pl, complete sequence',\n", |
||
| 8621 | " 'NZ_CP006683.1 Melissococcus plutonius S1, complete genome',\n", |
||
| 8622 | " 'NZ_CP006684.1 Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence',\n", |
||
| 8623 | " 'NZ_CP009239.1 Cellulophaga lytica strain HI1, complete genome',\n", |
||
| 8624 | " 'NZ_CP009089.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE7-100819, complete genome',\n", |
||
| 8625 | " 'NZ_CP008897.1 Enterobacter cloacae ECNIH3, complete genome',\n", |
||
| 8626 | " 'NZ_CP008898.1 Enterobacter cloacae ECNIH3 plasmid pENT-576, complete sequence',\n", |
||
| 8627 | " 'NZ_CP008899.1 Enterobacter cloacae ECNIH3 plasmid pENT-8a4, complete sequence',\n", |
||
| 8628 | " 'NZ_CP008900.1 Enterobacter cloacae ECNIH3 plasmid pENT-d4a, complete sequence',\n", |
||
| 8629 | " 'NZ_CP008901.1 Enterobacter cloacae ECNIH3 plasmid pKPC-47e, complete sequence',\n", |
||
| 8630 | " 'NZ_CP009090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE8-1021710, complete genome',\n", |
||
| 8631 | " 'NZ_CP008905.1 Enterobacter cloacae ECR091, complete genome',\n", |
||
| 8632 | " 'NZ_CP008906.1 Enterobacter cloacae ECR091 plasmid pENT-08e, complete sequence',\n", |
||
| 8633 | " 'NZ_CP008907.1 Enterobacter cloacae ECR091 plasmid pENT-4bd, complete sequence',\n", |
||
| 8634 | " 'NZ_CP008908.1 Enterobacter cloacae ECR091 plasmid pKPC-47e, complete sequence',\n", |
||
| 8635 | " 'NZ_CP009091.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE9-10012, complete genome',\n", |
||
| 8636 | " 'NZ_CP008943.1 Yersinia pseudotuberculosis strain ATCC 6904, complete genome',\n", |
||
| 8637 | " 'NZ_CP009092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE10-10052, complete genome',\n", |
||
| 8638 | " 'NZ_CP009093.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE11-10058, complete genome',\n", |
||
| 8639 | " 'NZ_CP009085.2 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE3-98983-4, complete genome',\n", |
||
| 8640 | " 'NZ_CP009084.2 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE2-98984-6, complete genome',\n", |
||
| 8641 | " 'NZ_CP007229.1 Mycoplasma dispar strain ATCC 27140, complete genome',\n", |
||
| 8642 | " 'NZ_CP016174.1 Amycolatopsis orientalis strain B-37, complete genome',\n", |
||
| 8643 | " 'NZ_CP010954.1 Sphingobium sp. YBL2, complete genome',\n", |
||
| 8644 | " 'NZ_CP010955.1 Sphingobium sp. YBL2 plasmid 1pYBL2-1, complete sequence',\n", |
||
| 8645 | " 'NZ_CP010956.1 Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence',\n", |
||
| 8646 | " 'NZ_CP010957.1 Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence',\n", |
||
| 8647 | " 'NZ_CP010958.1 Sphingobium sp. YBL2 plasmid 4pYBL2-4, complete sequence',\n", |
||
| 8648 | " 'NZ_CP010959.1 Sphingobium sp. YBL2 plasmid 5pYBL2-5, complete sequence',\n", |
||
| 8649 | " 'NZ_CP010960.1 Sphingobium sp. YBL2 plasmid 6pYBL2-6, complete sequence',\n", |
||
| 8650 | " 'NZ_CP009677.1 Mycoplasma hominis strain AF1, complete genome',\n", |
||
| 8651 | " 'NZ_CP007166.1 Xanthomonas oryzae pv. oryzae PXO86, complete genome',\n", |
||
| 8652 | " 'NZ_CP010976.1 Paenibacillus sp. IHBB 10380, complete genome',\n", |
||
| 8653 | " 'NZ_CP010977.1 Paenibacillus sp. IHBB 10380 plasmid, complete sequence',\n", |
||
| 8654 | " 'NZ_CP011005.1 Arthrobacter sp. IHBB 11108, complete genome',\n", |
||
| 8655 | " 'NZ_CP011006.1 Arthrobacter sp. IHBB 11108 plasmid pAG001, complete sequence',\n", |
||
| 8656 | " 'NZ_CP011004.1 Listeria monocytogenes strain N2306, complete genome',\n", |
||
| 8657 | " 'NZ_CP007699.2 Streptomyces lydicus strain A02 chromosome, complete genome',\n", |
||
| 8658 | " 'NZ_LN680001.1 Bacillus sp. BS34A genome assembly, chromosome: I',\n", |
||
| 8659 | " 'NZ_LM995445.1 Mycoplasma capricolum subsp. capripneumoniae genome assembly 9231-Abomsa assembly V8, chromosome : I',\n", |
||
| 8660 | " 'NZ_LN554882.1 Chlamydophila abortus genome assembly CAAB7, chromosome : 1',\n", |
||
| 8661 | " 'NZ_LM995446.1 Escherichia coli genome assembly EcRV308Chr, chromosome : 1',\n", |
||
| 8662 | " 'NZ_LM997412.1 Peptoniphilus sp. ING2-D1G genome assembly, chromosome: I',\n", |
||
| 8663 | " 'NZ_LN794158.1 Candidatus Methylopumilus turicensis genome assembly Candidatus Methylopumilus turicensis MMS-10A-171, chromosome : 1',\n", |
||
| 8664 | " 'NZ_LM651928.1 Shigella flexneri genome assembly NCTC1, chromosome : 1',\n", |
||
| 8665 | " 'NZ_LK936442.1 Burkholderia pseudomallei genome assembly BP_3921g, chromosome : 1',\n", |
||
| 8666 | " 'NZ_LK936443.1 Burkholderia pseudomallei genome assembly BP_3921g, chromosome : 2',\n", |
||
| 8667 | " 'NZ_LN614827.1 Legionella fallonii LLAP-10 genome assembly LFA, chromosome : I',\n", |
||
| 8668 | " 'NZ_LN614828.1 Legionella fallonii LLAP-10 genome assembly LFA, plasmid : II',\n", |
||
| 8669 | " 'NZ_LN614829.1 Legionella fallonii LLAP-10 genome assembly LFA, plasmid : III',\n", |
||
| 8670 | " 'NZ_CP007686.1 Listeria monocytogenes strain L2624, complete genome',\n", |
||
| 8671 | " 'NZ_CP007685.1 Listeria monocytogenes strain L2676, complete genome',\n", |
||
| 8672 | " 'NZ_CP011511.1 Shigella boydii strain ATCC 9210, complete genome',\n", |
||
| 8673 | " 'NZ_CP007684.1 Listeria monocytogenes strain L2626, complete genome',\n", |
||
| 8674 | " 'NZ_CP011501.1 Pandoraea apista strain AU2161, complete genome',\n", |
||
| 8675 | " 'NZ_CP011509.1 Archangium gephyra strain DSM 2261, complete genome',\n", |
||
| 8676 | " 'NZ_CP009498.1 Endomicrobium proavitum strain Rsa215, complete genome',\n", |
||
| 8677 | " 'NZ_CP011827.2 Xanthomonas citri pv. citri strain jx-6, complete genome',\n", |
||
| 8678 | " 'NZ_CP013665.1 Xanthomonas citri pv. citri strain jx-6 plasmid pXAC33, complete sequence',\n", |
||
| 8679 | " 'NZ_CP013664.1 Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence',\n", |
||
| 8680 | " 'NZ_CP011805.1 Altererythrobacter marensis strain KCTC 22370, complete genome',\n", |
||
| 8681 | " 'NZ_CP007601.1 Staphylococcus capitis subsp. capitis strain AYP1020, complete genome',\n", |
||
| 8682 | " 'NZ_CP007602.1 Staphylococcus capitis subsp. capitis strain AYP1020 plasmid pAYP1020, complete sequence',\n", |
||
| 8683 | " 'NZ_CP011503.1 Burkholderia pyrrocinia strain DSM 10685 chromosome 1, complete sequence',\n", |
||
| 8684 | " 'NZ_CP011504.1 Burkholderia pyrrocinia strain DSM 10685 chromosome 2, complete sequence',\n", |
||
| 8685 | " 'NZ_CP011505.1 Burkholderia pyrrocinia strain DSM 10685 chromosome 3, complete sequence',\n", |
||
| 8686 | " 'NZ_CP011506.1 Burkholderia pyrrocinia strain DSM 10685 plasmid p2327, complete sequence',\n", |
||
| 8687 | " 'NZ_CP011770.1 Croceicoccus naphthovorans strain PQ-2, complete genome',\n", |
||
| 8688 | " 'NZ_CP011771.1 Croceicoccus naphthovorans strain PQ-2 plasmid p1, complete sequence',\n", |
||
| 8689 | " 'NZ_CP011772.1 Croceicoccus naphthovorans strain PQ-2 plasmid p2, complete sequence',\n", |
||
| 8690 | " 'NZ_CP011807.3 Pandoraea faecigallinarum strain DSM 23572, complete genome',\n", |
||
| 8691 | " 'NZ_CP011808.2 Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence',\n", |
||
| 8692 | " 'NZ_CP011809.2 Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence',\n", |
||
| 8693 | " 'NZ_CP006636.1 Escherichia coli PCN061, complete genome',\n", |
||
| 8694 | " 'NZ_CP006637.1 Escherichia coli PCN061 plasmid PCN061p1, complete sequence',\n", |
||
| 8695 | " 'NZ_CP006638.1 Escherichia coli PCN061 plasmid PCN061p2, complete sequence',\n", |
||
| 8696 | " 'NZ_CP006639.1 Escherichia coli PCN061 plasmid PCN061p3, complete sequence',\n", |
||
| 8697 | " 'NZ_CP006640.1 Escherichia coli PCN061 plasmid PCN061p4, complete sequence',\n", |
||
| 8698 | " 'NZ_CP006641.1 Escherichia coli PCN061 plasmid PCN061p5, complete sequence',\n", |
||
| 8699 | " 'NZ_CP006642.1 Escherichia coli PCN061 plasmid PCN061p6, complete sequence',\n", |
||
| 8700 | " 'NZ_CP009743.1 Burkholderia contaminans strain MS14 chromosome 1, complete sequence',\n", |
||
| 8701 | " 'NZ_CP009744.1 Burkholderia contaminans strain MS14 chromosome 2, complete sequence',\n", |
||
| 8702 | " 'NZ_CP009745.1 Burkholderia contaminans strain MS14 chromosome 3, complete sequence',\n", |
||
| 8703 | " 'NZ_CP011855.1 Spiroplasma atrichopogonis strain GNAT3597, complete genome',\n", |
||
| 8704 | " 'NZ_CP011856.1 Spiroplasma eriocheiris strain DSM 21848, complete genome',\n", |
||
| 8705 | " 'NZ_CP011798.1 Enterobacter cloacae strain UW5, complete genome',\n", |
||
| 8706 | " 'NZ_CP007667.1 Neisseria meningitidis strain B6116/77, complete genome',\n", |
||
| 8707 | " 'NZ_CP007668.1 Neisseria meningitidis M0579, complete genome',\n", |
||
| 8708 | " 'NZ_CP011882.1 Bacillus subtilis strain TO-A JPC, complete genome',\n", |
||
| 8709 | " 'NZ_CP011804.1 Clostridium carboxidivorans P7 plasmid, complete sequence',\n", |
||
| 8710 | " 'NZ_CP011803.1 Clostridium carboxidivorans P7, complete genome',\n", |
||
| 8711 | " 'NZ_CP005969.1 Pseudomonas syringae pv. syringae B301D, complete genome',\n", |
||
| 8712 | " 'NZ_CP007584.2 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1735, complete genome',\n", |
||
| 8713 | " 'NZ_CP014707.1 Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence',\n", |
||
| 8714 | " 'NZ_CP006003.1 Myxococcus fulvus 124B02, complete genome',\n", |
||
| 8715 | " 'NZ_CP011374.1 Moraxella bovoculi strain 58069, complete genome',\n", |
||
| 8716 | " 'NZ_CP011375.1 Moraxella bovoculi strain 58069 plasmid, complete sequence',\n", |
||
| 8717 | " 'NZ_CP011376.1 Moraxella bovoculi strain 22581, complete genome',\n", |
||
| 8718 | " 'NZ_CP011377.1 Moraxella bovoculi strain 23343, complete genome',\n", |
||
| 8719 | " 'NZ_CP011378.1 Moraxella bovoculi strain 28389, complete genome',\n", |
||
| 8720 | " 'NZ_CP011379.1 Moraxella bovoculi strain 33362, complete genome',\n", |
||
| 8721 | " 'NZ_CP011380.2 Moraxella bovoculi strain 57922, complete genome',\n", |
||
| 8722 | " 'NZ_CP011365.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_015, complete genome',\n", |
||
| 8723 | " 'NZ_CP007497.1 Streptococcus suis strain ZY05719, complete genome',\n", |
||
| 8724 | " 'NZ_CP007537.1 Streptococcus pyogenes strain AP1, complete genome',\n", |
||
| 8725 | " 'NZ_CP009922.2 Streptomyces xiamenensis strain 318, complete genome',\n", |
||
| 8726 | " 'NZ_CP011114.1 Paenibacillus durus ATCC 35681, complete genome',\n", |
||
| 8727 | " 'NZ_CP011366.1 Salinicoccus halodurans strain H3B36, complete genome',\n", |
||
| 8728 | " 'NZ_CP011398.2 Listeria monocytogenes strain CFSAN008100 chromosome, complete genome',\n", |
||
| 8729 | " 'NZ_CP011399.1 Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence',\n", |
||
| 8730 | " 'NZ_AP012555.1 Mycobacterium avium subsp. hominissuis TH135 chromosomal DNA, complete genome',\n", |
||
| 8731 | " 'NZ_AP012556.1 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135 DNA, complete genome',\n", |
||
| 8732 | " 'NZ_AP013354.1 Helicobacter pylori 26695-1 DNA, complete genome',\n", |
||
| 8733 | " 'NZ_AP013356.1 Helicobacter pylori 26695-1CL DNA, complete genome',\n", |
||
| 8734 | " 'NZ_AP013355.1 Helicobacter pylori 26695-1CH DNA, complete genome',\n", |
||
| 8735 | " 'NZ_AP013293.1 Candidatus Sulcia muelleri PSPU DNA, complete genome',\n", |
||
| 8736 | " 'NZ_AP014582.1 Bordetella bronchiseptica DNA, complete genome, strain: S798',\n", |
||
| 8737 | " 'NZ_AP013294.1 Bacillus sp. OxB-1 DNA, complete genome',\n", |
||
| 8738 | " 'NZ_AP014524.1 Vibrio cholerae MS6 DNA, complete genome, chromosome 1',\n", |
||
| 8739 | " 'NZ_AP014525.1 Vibrio cholerae MS6 DNA, complete genome, chromosome 2',\n", |
||
| 8740 | " 'NZ_AP012549.1 Cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko DNA, complete genome',\n", |
||
| 8741 | " 'NZ_AP014646.1 Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1984',\n", |
||
| 8742 | " 'NZ_AP014622.1 Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1900',\n", |
||
| 8743 | " 'NZ_AP014658.1 Bifidobacterium longum DNA, complete genome, strain: 105-A',\n", |
||
| 8744 | " 'NZ_AP013028.1 Wolbachia endosymbiont of Cimex lectularius DNA, complete genome',\n", |
||
| 8745 | " 'NZ_CP026055.1 Aeromonas caviae strain FDAARGOS_72 chromosome, complete genome',\n", |
||
| 8746 | " 'NZ_CP026052.1 Salmonella enterica strain FDAARGOS_70 chromosome, complete genome',\n", |
||
| 8747 | " 'NZ_CP026053.1 Salmonella enterica strain FDAARGOS_70 plasmid unnamed1, complete sequence',\n", |
||
| 8748 | " 'NZ_CP026054.1 Salmonella enterica strain FDAARGOS_70 plasmid unnamed2, complete sequence',\n", |
||
| 8749 | " 'NZ_CP026051.1 Proteus mirabilis strain FDAARGOS_67 chromosome, complete genome',\n", |
||
| 8750 | " 'NZ_CP026050.1 Serratia marcescens strain FDAARGOS_65 chromosome, complete genome',\n", |
||
| 8751 | " 'NZ_CP026047.1 Raoultella planticola strain FDAARGOS_64 chromosome, complete genome',\n", |
||
| 8752 | " 'NZ_CP026048.1 Raoultella planticola strain FDAARGOS_64 plasmid unnamed1, complete sequence',\n", |
||
| 8753 | " 'NZ_CP026049.1 Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence',\n", |
||
| 8754 | " 'NZ_CP026046.1 Morganella morganii strain FDAARGOS_63 chromosome, complete genome',\n", |
||
| 8755 | " 'NZ_CP026045.1 Citrobacter freundii strain FDAARGOS_61 chromosome, complete genome',\n", |
||
| 8756 | " 'NZ_CP026044.1 Proteus mirabilis strain FDAARGOS_60 chromosome, complete genome',\n", |
||
| 8757 | " 'NZ_CP009850.1 Enterobacter cloacae strain ECNIH4, complete genome',\n", |
||
| 8758 | " 'NZ_CP009851.1 Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence',\n", |
||
| 8759 | " 'NZ_CP009852.1 Enterobacter cloacae strain ECNIH4 plasmid pENT-e56, complete sequence',\n", |
||
| 8760 | " 'NZ_CP009853.1 Enterobacter cloacae strain ECNIH4 plasmid pKPC-860, complete sequence',\n", |
||
| 8761 | " 'NZ_CP009880.1 Pantoea sp. PSNIH1, complete genome',\n", |
||
| 8762 | " 'NZ_CP009881.1 Pantoea sp. PSNIH1 plasmid pKPC-1c5, complete sequence',\n", |
||
| 8763 | " 'NZ_CP010325.1 Pantoea sp. PSNIH1 plasmid pPSP-057, complete sequence',\n", |
||
| 8764 | " 'NZ_CP009882.1 Pantoea sp. PSNIH1 plasmid pPSP-26e, complete sequence',\n", |
||
| 8765 | " 'NZ_CP010326.1 Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence',\n", |
||
| 8766 | " 'NZ_CP009883.1 Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence',\n", |
||
| 8767 | " 'NZ_CP009884.1 Pantoea sp. PSNIH1 plasmid pPSP-ee2, complete sequence',\n", |
||
| 8768 | " 'NZ_CP009854.1 Enterobacter cloacae strain ECNIH5, complete genome',\n", |
||
| 8769 | " 'NZ_CP009855.1 Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence',\n", |
||
| 8770 | " 'NZ_CP009856.1 Enterobacter cloacae strain ECNIH5 plasmid pENT-784, complete sequence',\n", |
||
| 8771 | " 'NZ_CP009857.1 Enterobacter cloacae strain ECNIH5 plasmid pENT-d0d, complete sequence',\n", |
||
| 8772 | " 'NZ_CP009858.1 Enterobacter cloacae strain ECNIH5 plasmid pKPC-47e, complete sequence',\n", |
||
| 8773 | " 'NZ_CP009859.1 Escherichia coli strain ECONIH1, complete genome',\n", |
||
| 8774 | " 'NZ_CP009860.1 Escherichia coli strain ECONIH1 plasmid pECO-824, complete sequence',\n", |
||
| 8775 | " 'NZ_CP009861.1 Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence',\n", |
||
| 8776 | " 'NZ_CP009862.1 Escherichia coli strain ECONIH1 plasmid pKPC-629, complete sequence',\n", |
||
| 8777 | " 'NZ_CP009863.1 Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29, complete genome',\n", |
||
| 8778 | " 'NZ_CP009864.1 Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPC-e4e, complete sequence',\n", |
||
| 8779 | " 'NZ_CP009865.1 Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPN-80a, complete sequence',\n", |
||
| 8780 | " 'NZ_CP009866.1 Pantoea sp. PSNIH2, complete genome',\n", |
||
| 8781 | " 'NZ_CP009867.1 Pantoea sp. PSNIH2 plasmid pKPC-56a, complete sequence',\n", |
||
| 8782 | " 'NZ_CP009868.1 Pantoea sp. PSNIH2 plasmid pPSP-100, complete sequence',\n", |
||
| 8783 | " 'NZ_CP009869.1 Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence',\n", |
||
| 8784 | " 'NZ_CP009870.1 Pantoea sp. PSNIH2 plasmid pPSP-b98, complete sequence',\n", |
||
| 8785 | " 'NZ_CP009871.1 Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence',\n", |
||
| 8786 | " 'NZ_CP012074.1 Prevotella fusca JCM 17724 strain W1435 chromosome 1, complete sequence',\n", |
||
| 8787 | " 'NZ_CP012075.1 Prevotella fusca JCM 17724 strain W1435 chromosome 2, complete sequence',\n", |
||
| 8788 | " 'NZ_CP012067.1 Aggregatibacter aphrophilus strain W10433, complete genome',\n", |
||
| 8789 | " 'NZ_CP012072.1 Actinomyces meyeri strain W712, complete genome',\n", |
||
| 8790 | " 'NZ_CP012073.1 Ottowia sp. oral taxon 894 strain W10237, complete genome',\n", |
||
| 8791 | " 'NZ_CP012037.1 Francisella tularensis subsp. tularensis strain WY96, complete genome',\n", |
||
| 8792 | " 'NZ_CP012328.1 Spiroplasma turonicum strain Tab4c, complete genome',\n", |
||
| 8793 | " 'NZ_CP012332.1 Vulgatibacter incomptus strain DSM 27710, complete genome',\n", |
||
| 8794 | " 'NZ_CP011786.1 Bifidobacterium actinocoloniiforme DSM 22766, complete genome',\n", |
||
| 8795 | " 'NZ_CP011995.1 Porphyromonas gingivalis strain A7436, complete genome',\n", |
||
| 8796 | " 'NZ_CP011339.1 Microcystis panniformis FACHB-1757, complete genome',\n", |
||
| 8797 | " 'NZ_CP010319.1 Streptococcus agalactiae strain GBS85147, complete genome',\n", |
||
| 8798 | " 'NZ_CP012299.1 Microbacterium sp. CGR1, complete genome',\n", |
||
| 8799 | " 'NZ_CP011929.1 Marinobacter sp. CP1, complete genome',\n", |
||
| 8800 | " 'NZ_CP012357.1 Spiroplasma litorale strain TN-1, complete genome',\n", |
||
| 8801 | " 'NZ_CP012358.1 Oblitimonas alkaliphila strain B4199 chromosome, complete genome',\n", |
||
| 8802 | " 'NZ_CP012359.1 Oblitimonas alkaliphila strain C6819 chromosome, complete genome',\n", |
||
| 8803 | " 'NZ_CP012360.1 Oblitimonas alkaliphila strain C6918 chromosome, complete genome',\n", |
||
| 8804 | " 'NZ_CP012362.1 Oblitimonas alkaliphila strain D3318 chromosome, complete genome',\n", |
||
| 8805 | " 'NZ_CP012363.1 Oblitimonas alkaliphila strain E1086 chromosome, complete genome',\n", |
||
| 8806 | " 'NZ_CP014773.1 Mucilaginibacter sp. PAMC 26640 chromosome, complete genome',\n", |
||
| 8807 | " 'NZ_CP014772.1 Mucilaginibacter sp. PAMC 26640 plasmid unnamed, complete sequence',\n", |
||
| 8808 | " 'NZ_CP014771.1 Hymenobacter sp. PAMC 26554 chromosome, complete genome',\n", |
||
| 8809 | " 'NZ_CP014769.1 Hymenobacter sp. PAMC 26554 plasmid unnamed1, complete sequence',\n", |
||
| 8810 | " 'NZ_CP014770.1 Hymenobacter sp. PAMC 26554 plasmid unnamed2, complete sequence',\n", |
||
| 8811 | " 'NZ_CP014805.2 Elizabethkingia anophelis strain CSID_3015183678 chromosome, complete genome',\n", |
||
| 8812 | " 'NZ_CP014858.1 Bacillus subtilis subsp. subtilis strain D12-5 chromosome, complete genome',\n", |
||
| 8813 | " 'NZ_CP014783.1 Bacillus amyloliquefaciens strain B15 chromosome, complete genome',\n", |
||
| 8814 | " 'NZ_CP014790.1 Listeria monocytogenes strain 2015TE24968 chromosome, complete genome',\n", |
||
| 8815 | " 'NZ_CP015985.1 Listeria monocytogenes strain 2015TE24968 plasmid pl2015TE24968, complete sequence',\n", |
||
| 8816 | " 'NZ_CP014840.1 Bacillus subtilis subsp. globigii strain ATCC 49760 chromosome, complete genome',\n", |
||
| 8817 | " 'NZ_CP014784.1 Pseudomonas alcaligenes strain NEB 585, complete genome',\n", |
||
| 8818 | " 'NZ_CP014835.1 Streptococcus halotolerans strain HTS9 chromosome, complete genome',\n", |
||
| 8819 | " 'NZ_CP014856.1 Lysinibacillus sphaericus III(3)7, complete genome',\n", |
||
| 8820 | " 'NZ_CP014857.1 Lysinibacillus sphaericus III(3)7 plasmid, complete sequence',\n", |
||
| 8821 | " 'NZ_CP014847.1 Bacillus thuringiensis strain HD12, complete sequence',\n", |
||
| 8822 | " 'NZ_CP014848.1 Bacillus thuringiensis strain HD12 plasmid pHD120017, complete sequence',\n", |
||
| 8823 | " 'NZ_CP014849.1 Bacillus thuringiensis strain HD12 plasmid pHD120038, complete sequence',\n", |
||
| 8824 | " 'NZ_CP014850.1 Bacillus thuringiensis strain HD12 plasmid pHD120039, complete sequence',\n", |
||
| 8825 | " 'NZ_CP014851.1 Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence',\n", |
||
| 8826 | " 'NZ_CP014852.1 Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence',\n", |
||
| 8827 | " 'NZ_CP014853.1 Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence',\n", |
||
| 8828 | " 'NZ_CP014949.1 Enterococcus faecalis strain LD33, complete genome',\n", |
||
| 8829 | " 'NZ_CP014991.1 Helicobacter himalayensis strain YS1, complete genome',\n", |
||
| 8830 | " 'NZ_CP014352.1 Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome',\n", |
||
| 8831 | " 'NZ_CP014353.1 Acidipropionibacterium acidipropionici strain ATCC 55737 plasmid unnamed, complete sequence',\n", |
||
| 8832 | " 'NZ_CP014867.1 Pseudomonas chlororaphis isolate 189 chromosome, complete genome',\n", |
||
| 8833 | " 'NZ_CP014861.1 Erysipelothrix rhusiopathiae strain GXBY-1 chromosome, complete genome',\n", |
||
| 8834 | " 'NZ_CP014865.1 Rickettsia prowazekii strain Naples-1 chromosome, complete genome',\n", |
||
| 8835 | " 'NZ_CP015004.1 Bacillus subtilis strain SZMC 6179J, complete genome',\n", |
||
| 8836 | " 'NZ_CP015005.1 Aminobacter aminovorans strain KCTC 2477, complete genome',\n", |
||
| 8837 | " 'NZ_CP015006.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence',\n", |
||
| 8838 | " 'NZ_CP015007.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence',\n", |
||
| 8839 | " 'NZ_CP015008.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA03, complete sequence',\n", |
||
| 8840 | " 'NZ_CP015009.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA04, complete sequence',\n", |
||
| 8841 | " 'NZ_CP010838.1 Bordetella pertussis strain H374, complete genome',\n", |
||
| 8842 | " 'NZ_CP010839.1 Bordetella pertussis strain H378, complete genome',\n", |
||
| 8843 | " 'NZ_CP010840.1 Bordetella pertussis strain H379, complete genome',\n", |
||
| 8844 | " 'NZ_CP014029.2 Klebsiella aerogenes strain FDAARGOS_152 chromosome, complete genome',\n", |
||
| 8845 | " 'NZ_CP014030.2 Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155 chromosome, complete genome',\n", |
||
| 8846 | " 'NZ_CP014031.2 Hafnia paralvei strain FDAARGOS_158 chromosome, complete genome',\n", |
||
| 8847 | " 'NZ_CP014268.2 Escherichia coli B strain C2566, complete genome',\n", |
||
| 8848 | " 'NZ_CP014269.1 Escherichia coli B strain C3029, complete genome',\n", |
||
| 8849 | " 'NZ_CP014270.1 Escherichia coli K-12 strain DHB4, complete genome',\n", |
||
| 8850 | " 'NZ_CP014271.1 Escherichia coli K-12 strain DHB4 plasmid F128-(DHB4), complete sequence',\n", |
||
| 8851 | " 'NZ_CP014272.1 Escherichia coli K-12 strain C3026, complete genome',\n", |
||
| 8852 | " 'NZ_CP014273.1 Escherichia coli K-12 strain C3026 plasmid F128-(C3026), complete sequence',\n", |
||
| 8853 | " 'NZ_CP014326.1 Streptococcus mitis strain SVGS_061, complete genome',\n", |
||
| 8854 | " 'NZ_CP014223.1 [Clostridium] propionicum DSM 1682, complete genome',\n", |
||
| 8855 | " 'NZ_CP014279.1 Corynebacterium stationis strain ATCC 6872, complete genome',\n", |
||
| 8856 | " 'NZ_CP013926.1 Alteromonas stellipolaris strain LMG 21861, complete genome',\n", |
||
| 8857 | " 'NZ_CP013927.1 Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence',\n", |
||
| 8858 | " 'NZ_CP013932.1 Alteromonas sp. Mac1, complete genome',\n", |
||
| 8859 | " 'NZ_CP014322.1 Alteromonas addita strain R10SW13, complete genome',\n", |
||
| 8860 | " 'NZ_CP014274.1 Stenotrophomonas sp. KCTC 12332, complete genome',\n", |
||
| 8861 | " 'NZ_CP014323.1 Alteromonas macleodii strain D7, complete genome',\n", |
||
| 8862 | " 'NZ_CP014301.1 Bosea sp. PAMC 26642, complete genome',\n", |
||
| 8863 | " 'NZ_CP014302.1 Bosea sp. PAMC 26642 plasmid, complete sequence',\n", |
||
| 8864 | " 'NZ_CP014304.1 Hymenobacter sp. PAMC26628, complete genome',\n", |
||
| 8865 | " 'NZ_CP014303.1 Hymenobacter sp. PAMC26628 plasmid, complete sequence',\n", |
||
| 8866 | " 'NZ_CP013928.1 Alteromonas mediterranea strain UM8, complete genome',\n", |
||
| 8867 | " 'NZ_CP013929.1 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence',\n", |
||
| 8868 | " 'NZ_CP014206.1 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome',\n", |
||
| 8869 | " 'NZ_CP005083.1 Sphingobium sp. TKS chromosome 1, complete sequence',\n", |
||
| 8870 | " 'NZ_CP005084.1 Sphingobium sp. TKS chromosome 2, complete sequence',\n", |
||
| 8871 | " 'NZ_CP005085.1 Sphingobium sp. TKS plasmid pTK1, complete sequence',\n", |
||
| 8872 | " 'NZ_CP005086.1 Sphingobium sp. TKS plasmid pTK2, complete sequence',\n", |
||
| 8873 | " 'NZ_CP005087.1 Sphingobium sp. TKS plasmid pTK3, complete sequence',\n", |
||
| 8874 | " 'NZ_CP005088.1 Sphingobium sp. TKS plasmid pTK4, complete sequence',\n", |
||
| 8875 | " 'NZ_CP005090.1 Sphingobium sp. TKS plasmid pTK6, complete sequence',\n", |
||
| 8876 | " 'NZ_CP005091.1 Sphingobium sp. TKS plasmid pTK7, complete sequence',\n", |
||
| 8877 | " 'NZ_CP005092.1 Sphingobium sp. TKS plasmid pTK8, complete sequence',\n", |
||
| 8878 | " 'NZ_CP005093.1 Sphingobium sp. TKS plasmid pTK9, complete sequence',\n", |
||
| 8879 | " 'NZ_CP005089.1 Sphingobium sp. TKS plasmid pTK5, complete sequence',\n", |
||
| 8880 | " 'NZ_CP005188.1 Sphingobium sp. MI1205 chromosome 1, complete sequence',\n", |
||
| 8881 | " 'NZ_CP005189.1 Sphingobium sp. MI1205 chromosome 2, complete sequence',\n", |
||
| 8882 | " 'NZ_CP005190.1 Sphingobium sp. MI1205 plasmid pMI1, complete sequence',\n", |
||
| 8883 | " 'NZ_CP005191.1 Sphingobium sp. MI1205 plasmid pMI2, complete sequence',\n", |
||
| 8884 | " 'NZ_CP005192.1 Sphingobium sp. MI1205 plasmid pMI3, complete sequence',\n", |
||
| 8885 | " 'NZ_CP005193.1 Sphingobium sp. MI1205 plasmid pMI4, complete sequence',\n", |
||
| 8886 | " 'NZ_CP014004.1 Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835, complete genome',\n", |
||
| 8887 | " 'NZ_CP014005.1 Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835 plasmid unnamed1, complete sequence',\n", |
||
| 8888 | " 'NZ_CP014006.1 Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835 plasmid unnamed2, complete sequence',\n", |
||
| 8889 | " 'NZ_CP013357.1 Burkholderia oklahomensis EO147 chromosome 1, complete sequence',\n", |
||
| 8890 | " 'NZ_CP013356.1 Burkholderia oklahomensis EO147 chromosome 2, complete sequence',\n", |
||
| 8891 | " 'NZ_CP013358.1 Burkholderia oklahomensis C6786 chromosome 1, complete sequence',\n", |
||
| 8892 | " 'NZ_CP013359.1 Burkholderia oklahomensis C6786 chromosome 2, complete sequence',\n", |
||
| 8893 | " 'NZ_CP013373.1 Burkholderia sp. NRF60-BP8 chromosome 1, complete sequence',\n", |
||
| 8894 | " 'NZ_CP013372.1 Burkholderia sp. NRF60-BP8 chromosome 2, complete sequence',\n", |
||
| 8895 | " 'NZ_CP013374.1 Burkholderia sp. NRF60-BP8 chromosome 3, complete sequence',\n", |
||
| 8896 | " 'NZ_CP013389.1 Burkholderia sp. BDU8 chromosome 1, complete sequence',\n", |
||
| 8897 | " 'NZ_CP013388.1 Burkholderia sp. BDU8 chromosome 2, complete sequence',\n", |
||
| 8898 | " 'NZ_CP013386.1 Burkholderia sp. BDU6 chromosome 1, complete sequence',\n", |
||
| 8899 | " 'NZ_CP013387.1 Burkholderia sp. BDU6 chromosome 2, complete sequence',\n", |
||
| 8900 | " 'NZ_CP013384.1 Burkholderia sp. LA-2-3-30-S1-D2 chromosome 1, complete sequence',\n", |
||
| 8901 | " 'NZ_CP013383.1 Burkholderia sp. LA-2-3-30-S1-D2 chromosome 2, complete sequence',\n", |
||
| 8902 | " 'NZ_CP013385.1 Burkholderia sp. LA-2-3-30-S1-D2 chromosome 3, complete sequence',\n", |
||
| 8903 | " 'NZ_CP013417.1 Burkholderia sp. MSMB0266 chromosome 1, complete sequence',\n", |
||
| 8904 | " 'NZ_CP013418.1 Burkholderia sp. MSMB0266 chromosome 2, complete sequence',\n", |
||
| 8905 | " 'NZ_CP013419.1 Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence',\n", |
||
| 8906 | " 'NZ_CP013424.1 Burkholderia sp. MSMB0852 chromosome 1, complete sequence',\n", |
||
| 8907 | " 'NZ_CP013425.1 Burkholderia sp. MSMB0852 chromosome 2, complete sequence',\n", |
||
| 8908 | " 'NZ_CP013423.1 Burkholderia sp. MSMB0852 plasmid pMSMB0852, complete sequence',\n", |
||
| 8909 | " 'NZ_CP013427.1 Burkholderia sp. MSMB0856 chromosome 1, complete sequence',\n", |
||
| 8910 | " 'NZ_CP013428.1 Burkholderia sp. MSMB0856 chromosome 2, complete sequence',\n", |
||
| 8911 | " 'NZ_CP013429.1 Burkholderia sp. MSMB0856 chromosome 3, complete sequence',\n", |
||
| 8912 | " 'NZ_CP013426.1 Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence',\n", |
||
| 8913 | " 'NZ_CP014010.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF999, complete genome',\n", |
||
| 8914 | " 'NZ_CP014011.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF999 plasmid pRJF999, complete sequence',\n", |
||
| 8915 | " 'NZ_CP014008.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF293, complete genome',\n", |
||
| 8916 | " 'NZ_CP014009.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF293 plasmid pRJF293, complete sequence',\n", |
||
| 8917 | " 'NZ_CP013457.1 Burkholderia sp. MSMB617WGS chromosome 1, complete sequence',\n", |
||
| 8918 | " 'NZ_CP013458.1 Burkholderia sp. MSMB617WGS chromosome 2, complete sequence',\n", |
||
| 8919 | " 'NZ_CP013992.1 Flavobacterium columnare strain 94-081, complete genome',\n", |
||
| 8920 | " 'NZ_CP013920.1 Arsenophonus symbiont of Lipoptena fortisetosa strain CB, complete genome',\n", |
||
| 8921 | " 'NZ_CP013975.1 Piscirickettsia salmonis strain CGR02, complete genome',\n", |
||
| 8922 | " 'NZ_CP013976.1 Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-1, complete sequence',\n", |
||
| 8923 | " 'NZ_CP013977.1 Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-2, complete sequence',\n", |
||
| 8924 | " 'NZ_CP013978.1 Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-4, complete sequence',\n", |
||
| 8925 | " 'NZ_CP013997.1 Pseudomonas monteilii strain USDA-ARS-USMARC-56711, complete genome',\n", |
||
| 8926 | " 'NC_022998.1 Spiroplasma apis B31, complete genome',\n", |
||
| 8927 | " 'NC_023037.2 Paenibacillus polymyxa CR1, complete genome',\n", |
||
| 8928 | " 'NZ_CP006579.1 Aeromonas hydrophila 4AK4, complete genome',\n", |
||
| 8929 | " 'NZ_CP006859.1 Listeria monocytogenes serotype 1/2a str. 08-6997, complete genome',\n", |
||
| 8930 | " 'NZ_CP003915.1 Advenella mimigardefordensis DPN7, complete genome',\n", |
||
| 8931 | " 'NZ_CP003916.1 Advenella mimigardefordensis DPN7 plasmid 24p, complete sequence',\n", |
||
| 8932 | " 'NZ_CP007128.1 Gemmatirosa kalamazoonesis strain KBS708, complete genome',\n", |
||
| 8933 | " 'NZ_CP007129.1 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence',\n", |
||
| 8934 | " 'NZ_CP007127.1 Gemmatirosa kalamazoonesis strain KBS708 phage-like extrachromosal element, complete sequence',\n", |
||
| 8935 | " 'NZ_CP007130.1 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence',\n", |
||
| 8936 | " 'NZ_CP006720.1 Spiroplasma mirum ATCC 29335 strain SMCA, complete genome',\n", |
||
| 8937 | " 'NZ_CP006715.1 Bifidobacterium breve 689b, complete genome',\n", |
||
| 8938 | " 'NZ_CP007230.1 Yersinia similis strain 228, complete genome',\n", |
||
| 8939 | " 'NZ_CP007231.1 Yersinia similis strain 228 plasmid, complete sequence',\n", |
||
| 8940 | " 'NC_022107.1 Chlamydia trachomatis F/11-96, complete genome',\n", |
||
| 8941 | " 'NZ_CP007446.1 Snodgrassella alvi wkB2, complete genome',\n", |
||
| 8942 | " 'NZ_CP012371.1 Nitrosospira briensis C-128, complete genome',\n", |
||
| 8943 | " 'NZ_CP010493.1 Campylobacter jejuni strain CJ677CC062, complete genome',\n", |
||
| 8944 | " 'NZ_CP010494.1 Campylobacter jejuni strain CJ677CC059, complete genome',\n", |
||
| 8945 | " 'NZ_CP010496.1 Campylobacter jejuni strain CJ677CC032, complete genome',\n", |
||
| 8946 | " 'NZ_CP010497.1 Campylobacter jejuni strain CJ677CC033, complete genome',\n", |
||
| 8947 | " 'NZ_CP010498.1 Campylobacter jejuni strain CJ677CC537, complete genome',\n", |
||
| 8948 | " 'NZ_CP010499.1 Campylobacter jejuni strain CJ677CC542, complete genome',\n", |
||
| 8949 | " 'NZ_CP010500.1 Campylobacter jejuni strain CJ677CC528, complete genome',\n", |
||
| 8950 | " 'NZ_CP010495.1 Campylobacter jejuni strain CJ677CC538, complete genome',\n", |
||
| 8951 | " 'NZ_CP010501.1 Campylobacter jejuni strain CJ677CC520, complete genome',\n", |
||
| 8952 | " 'NZ_CP010502.1 Campylobacter jejuni strain CJ677CC014, complete genome',\n", |
||
| 8953 | " 'NZ_CP010503.1 Campylobacter jejuni strain CJ677CC039, complete genome',\n", |
||
| 8954 | " 'NZ_CP010504.1 Campylobacter jejuni strain CJ677CC085, complete genome',\n", |
||
| 8955 | " 'NZ_CP010505.1 Campylobacter jejuni strain CJ677CC052, complete genome',\n", |
||
| 8956 | " 'NZ_CP010506.1 Campylobacter jejuni strain CJ677CC527, complete genome',\n", |
||
| 8957 | " 'NZ_CP010507.1 Campylobacter jejuni strain CJ677CC078, complete genome',\n", |
||
| 8958 | " 'NZ_CP010508.1 Campylobacter jejuni strain CJ677CC523, complete genome',\n", |
||
| 8959 | " 'NZ_CP010509.1 Campylobacter jejuni strain CJ677CC540, complete genome',\n", |
||
| 8960 | " 'NZ_CP010510.1 Campylobacter jejuni strain CJ677CC040, complete genome',\n", |
||
| 8961 | " 'NZ_CP010511.1 Campylobacter jejuni strain CJ677CC061, complete genome',\n", |
||
| 8962 | " 'NZ_CP010457.1 Campylobacter jejuni strain CJ677CC539, complete genome',\n", |
||
| 8963 | " 'NZ_CP010458.1 Campylobacter jejuni strain CJ677CC533, complete genome',\n", |
||
| 8964 | " 'NZ_CP010459.1 Campylobacter jejuni strain CJ677CC047, complete genome',\n", |
||
| 8965 | " 'NZ_CP009802.1 Streptomyces sp. FR-008, complete genome',\n", |
||
| 8966 | " 'NZ_CP009803.1 Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence',\n", |
||
| 8967 | " 'NZ_CP009804.1 Streptomyces sp. FR-008 plasmid pSSFR2, complete sequence',\n", |
||
| 8968 | " 'NZ_CP012482.1 Bacillus cellulasensis strain NJ-V2, complete genome',\n", |
||
| 8969 | " 'NZ_CP013114.1 Staphylococcus equorum strain KS1039, complete genome',\n", |
||
| 8970 | " 'NZ_CP009847.1 Vibrio parahaemolyticus strain FORC_004 chromosome 1, complete sequence',\n", |
||
| 8971 | " 'NZ_CP009848.1 Vibrio parahaemolyticus strain FORC_004 chromosome 2, complete sequence',\n", |
||
| 8972 | " 'NZ_CP009849.1 Vibrio parahaemolyticus strain FORC_004 plasmid pFORC4, complete sequence',\n", |
||
| 8973 | " 'NZ_CP009984.1 Vibrio vulnificus strain FORC_009 chromosome 1, complete sequence',\n", |
||
| 8974 | " 'NZ_CP009985.1 Vibrio vulnificus strain FORC_009 chromosome 2, complete sequence',\n", |
||
| 8975 | " 'NZ_CP012837.1 Corynebacterium pseudotuberculosis strain 1002B, complete genome',\n", |
||
| 8976 | " 'NZ_CP012907.1 Helicobacter pylori strain 29CaP, complete genome',\n", |
||
| 8977 | " 'NZ_CP012905.1 Helicobacter pylori strain 7C, complete sequence',\n", |
||
| 8978 | " 'NZ_CP012906.1 Helicobacter pylori strain 7C plasmid, complete sequence',\n", |
||
| 8979 | " 'NZ_CP013120.1 Alteromonas stellipolaris LMG 21856, complete genome',\n", |
||
| 8980 | " 'NZ_CP013121.1 Fusobacterium nucleatum subsp. polymorphum strain ChDC F306, complete genome',\n", |
||
| 8981 | " 'NZ_CP013122.1 Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed1, complete sequence',\n", |
||
| 8982 | " 'NZ_CP013123.1 Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed2, complete sequence',\n", |
||
| 8983 | " 'NZ_CP014140.1 Aneurinibacillus sp. XH2, complete genome',\n", |
||
| 8984 | " 'NZ_CP013126.1 Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome',\n", |
||
| 8985 | " 'NZ_CP012921.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701, complete genome',\n", |
||
| 8986 | " 'NZ_CP012922.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 plasmid pSA02DT10168701_37, complete sequence',\n", |
||
| 8987 | " 'NZ_CP012923.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 plasmid pSA02DT10168701_99, complete sequence',\n", |
||
| 8988 | " 'NZ_CP012924.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374, complete genome',\n", |
||
| 8989 | " 'NZ_CP012925.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_2, complete sequence',\n", |
||
| 8990 | " 'NZ_CP012927.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_3, complete sequence',\n", |
||
| 8991 | " 'NZ_CP012926.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_37, complete sequence',\n", |
||
| 8992 | " 'NZ_CP012928.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_62, complete sequence',\n", |
||
| 8993 | " 'NZ_CP012929.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_96, complete sequence',\n", |
||
| 8994 | " 'NZ_CP012930.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290, complete genome',\n", |
||
| 8995 | " 'NZ_CP012932.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_2, complete sequence',\n", |
||
| 8996 | " 'NZ_CP012931.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence',\n", |
||
| 8997 | " 'NZ_CP012933.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_3-1, complete sequence',\n", |
||
| 8998 | " 'NZ_CP012934.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_3-2, complete sequence',\n", |
||
| 8999 | " 'NZ_CP012935.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_3-3, complete sequence',\n", |
||
| 9000 | " 'NZ_CP012936.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_98, complete sequence',\n", |
||
| 9001 | " 'NZ_CP013133.1 Rickettsia rhipicephali strain HJ#5, complete genome',\n", |
||
| 9002 | " 'NZ_CP013134.1 Rickettsia rhipicephali strain HJ#5 plasmid pHJ51, complete sequence',\n", |
||
| 9003 | " 'NZ_CP013135.1 Rickettsia rhipicephali strain HJ#5 plasmid pHJ52 sequence',\n", |
||
| 9004 | " 'NZ_CP013112.1 Escherichia coli strain YD786, complete genome',\n", |
||
| 9005 | " 'NZ_CP013141.1 Lysobacter antibioticus strain ATCC 29479 genome',\n", |
||
| 9006 | " 'NZ_CP011129.1 Lysobacter antibioticus strain 76, complete genome',\n", |
||
| 9007 | " 'NZ_CP012096.1 Serratia plymuthica strain 3Rp8, complete genome',\n", |
||
| 9008 | " 'NZ_CP012097.1 Serratia plymuthica strain 3Re4-18, complete genome',\n", |
||
| 9009 | " 'NZ_CP015963.1 Altererythrobacter ishigakiensis strain NBRC 107699 chromosome, complete genome',\n", |
||
| 9010 | " 'NZ_CP016033.1 Porphyrobacter neustonensis strain DSM 9434, complete genome',\n", |
||
| 9011 | " 'NZ_CP015990.1 Klebsiella pneumoniae strain BR chromosome, complete genome',\n", |
||
| 9012 | " 'NZ_CP015991.1 Klebsiella pneumoniae strain BR plasmid pWSZBR, complete sequence',\n", |
||
| 9013 | " 'NZ_CP014762.1 Klebsiella pneumoniae strain KPNIH39, complete genome',\n", |
||
| 9014 | " 'NZ_CP014763.1 Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence',\n", |
||
| 9015 | " 'NZ_CP014764.1 Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-704, complete sequence',\n", |
||
| 9016 | " 'NZ_CP014765.1 Klebsiella pneumoniae strain KPNIH39 plasmid pKpQIL-9b8, complete sequence',\n", |
||
| 9017 | " 'NZ_CP012968.1 Staphylococcus sp. AntiMn-1, complete genome',\n", |
||
| 9018 | " 'NZ_CP013300.1 Staphylococcus sp. AntiMn-1 plasmid AM1_232, complete sequence',\n", |
||
| 9019 | " 'NZ_CP015850.1 Ralstonia solanacearum strain YC40-M chromosome, complete genome',\n", |
||
| 9020 | " 'NZ_CP015851.1 Ralstonia solanacearum strain YC40-M plasmid, complete sequence',\n", |
||
| 9021 | " 'NZ_CP015025.1 Klebsiella pneumoniae strain Kpn223, complete genome',\n", |
||
| 9022 | " 'NZ_CP015026.1 Klebsiella pneumoniae strain Kpn223 plasmid pKPN-065, complete sequence',\n", |
||
| 9023 | " 'NZ_CP015130.1 Klebsiella pneumoniae strain Kpn555 chromosome, complete genome',\n", |
||
| 9024 | " 'NZ_CP015131.1 Klebsiella pneumoniae strain Kpn555 plasmid pKPN-7c3, complete sequence',\n", |
||
| 9025 | " 'NZ_CP015133.1 Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d6b, complete sequence',\n", |
||
| 9026 | " 'NZ_CP015132.1 Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d90, complete sequence',\n", |
||
| 9027 | " 'NZ_CP015159.1 Escherichia coli strain Eco889 chromosome, complete genome',\n", |
||
| 9028 | " 'NZ_CP015161.1 Escherichia coli strain Eco889 plasmid pECO-93a, complete sequence',\n", |
||
| 9029 | " 'NZ_CP015160.1 Escherichia coli strain Eco889 plasmid pECO-fce, complete sequence',\n", |
||
| 9030 | " 'NZ_CP015309.1 Corynebacterium pseudotuberculosis strain PA02 chromosome, complete genome',\n", |
||
| 9031 | " 'NZ_CP014623.1 Lactobacillus backii strain TMW 1.1988 chromosome, complete genome',\n", |
||
| 9032 | " 'NZ_CP014624.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-1, complete sequence',\n", |
||
| 9033 | " 'NZ_CP014625.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-10, complete sequence',\n", |
||
| 9034 | " 'NZ_CP014626.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-2, complete sequence',\n", |
||
| 9035 | " 'NZ_CP014627.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-3, complete sequence',\n", |
||
| 9036 | " 'NZ_CP014628.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-4, complete sequence',\n", |
||
| 9037 | " 'NZ_CP014629.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-5, complete sequence',\n", |
||
| 9038 | " 'NZ_CP014630.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-6, complete sequence',\n", |
||
| 9039 | " 'NZ_CP014631.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-7, complete sequence',\n", |
||
| 9040 | " 'NZ_CP014632.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-8, complete sequence',\n", |
||
| 9041 | " 'NZ_CP014633.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-9, complete sequence',\n", |
||
| 9042 | " 'NZ_CP012969.1 Psychrobacter sp. AntiMn-1, complete genome',\n", |
||
| 9043 | " 'NZ_CP013101.1 Clostridium perfringens strain FORC_025, complete genome',\n", |
||
| 9044 | " 'NZ_CP017715.1 Marinobacter salinus strain Hb8 chromosome, complete genome',\n", |
||
| 9045 | " 'NZ_CP017188.2 Xanthomonas citri pv. glycines str. 8ra chromosome, complete genome',\n", |
||
| 9046 | " 'NZ_CP017189.2 Xanthomonas citri pv. glycines str. 8ra plasmid pXAG27.8ra, complete sequence',\n", |
||
| 9047 | " 'NZ_CP017190.1 Xanthomonas campestris pv. vesicatoria str. 85-10, complete sequence',\n", |
||
| 9048 | " 'NZ_CP017191.1 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence',\n", |
||
| 9049 | " 'NZ_CP017192.1 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_2, complete sequence',\n", |
||
| 9050 | " 'NZ_CP017193.1 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_3, complete sequence',\n", |
||
| 9051 | " 'NZ_CP017603.1 Clostridium formicaceticum strain ATCC 27076, complete genome',\n", |
||
| 9052 | " 'NZ_CP015208.1 Candidatus Rhodoluna planktonica strain MWH-Dar1, complete genome',\n", |
||
| 9053 | " 'NZ_CP015381.1 Desulfococcus multivorans strain DSM 2059, complete genome',\n", |
||
| 9054 | " 'NZ_CP017751.1 Cupriavidus sp. USMAHM13 chromosome 1, complete sequence',\n", |
||
| 9055 | " 'NZ_CP017752.1 Cupriavidus sp. USMAHM13 chromosome 2, complete sequence',\n", |
||
| 9056 | " 'NZ_CP017753.1 Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence',\n", |
||
| 9057 | " 'NZ_CP017748.1 Cupriavidus sp. USMAA2-4 chromosome 1, complete sequence',\n", |
||
| 9058 | " 'NZ_CP017749.1 Cupriavidus sp. USMAA2-4 chromosome 2, complete sequence',\n", |
||
| 9059 | " 'NZ_CP017750.1 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence',\n", |
||
| 9060 | " 'NZ_CP017754.1 Cupriavidus sp. USMAA1020 chromosome 1, complete sequence',\n", |
||
| 9061 | " 'NZ_CP017755.1 Cupriavidus sp. USMAA1020 chromosome 2, complete sequence',\n", |
||
| 9062 | " 'NZ_CP017756.1 Cupriavidus sp. USMAA1020 plasmid unnamed1, complete sequence',\n", |
||
| 9063 | " 'NZ_CP017747.1 Bacillus velezensis strain SYBC H47 chromosome, complete genome',\n", |
||
| 9064 | " 'NZ_CP017421.1 Arthrobacter sp. ZXY-2 chromosome, complete genome',\n", |
||
| 9065 | " 'NZ_CP017422.1 Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence',\n", |
||
| 9066 | " 'NZ_CP017423.1 Arthrobacter sp. ZXY-2 plasmid pZXY22, complete sequence',\n", |
||
| 9067 | " 'NZ_CP017424.1 Arthrobacter sp. ZXY-2 plasmid pZXY23, complete sequence',\n", |
||
| 9068 | " 'NZ_CP017425.1 Arthrobacter sp. ZXY-2 plasmid pZXY24, complete sequence',\n", |
||
| 9069 | " 'NZ_CP017426.1 Arthrobacter sp. ZXY-2 plasmid pZXY25, complete sequence',\n", |
||
| 9070 | " 'NZ_CP017640.1 Methylobacterium sp. C1 chromosome, complete genome',\n", |
||
| 9071 | " 'NZ_CP017718.1 Hyphomonas sp. Mor2 genome',\n", |
||
| 9072 | " 'NZ_CP013013.1 Vibrio cholerae strain Env-390 chromosome 1, complete sequence',\n", |
||
| 9073 | " 'NZ_CP013014.1 Vibrio cholerae strain Env-390 chromosome 2, complete sequence',\n", |
||
| 9074 | " 'NZ_CP013475.1 Mycobacterium tuberculosis strain 1458, complete genome',\n", |
||
| 9075 | " 'NZ_CP017707.1 Chromobacterium vaccinii strain 21-1 chromosome, complete genome',\n", |
||
| 9076 | " 'NZ_CP017622.1 Ketogulonicigenium vulgare strain SPU B805 chromosome, complete genome',\n", |
||
| 9077 | " 'NZ_CP012426.1 Klebsiella pneumoniae strain KP5 chromosome, complete genome',\n", |
||
| 9078 | " 'NZ_CP012427.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-1, complete sequence',\n", |
||
| 9079 | " 'NZ_CP012428.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence',\n", |
||
| 9080 | " 'NZ_CP012429.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-3, complete sequence',\n", |
||
| 9081 | " 'NZ_CP011839.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-NDM, complete sequence',\n", |
||
| 9082 | " 'NZ_CP017100.1 Escherichia coli strain K-12 NEB 5-alpha chromosome, complete genome',\n", |
||
| 9083 | " 'NZ_CP017107.1 Lactobacillus salivarius strain CICC 23174 chromosome, complete genome',\n", |
||
| 9084 | " 'NZ_CP017108.1 Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence',\n", |
||
| 9085 | " 'NZ_CP017109.1 Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence',\n", |
||
| 9086 | " 'NZ_CP017110.1 Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence',\n", |
||
| 9087 | " 'NZ_CP017124.1 Lactobacillus curvatus strain WiKim38, complete genome',\n", |
||
| 9088 | " 'NZ_CP016395.1 Bacillus velezensis strain M75 chromosome, complete genome',\n", |
||
| 9089 | " 'NZ_CP017111.1 Sulfurospirillum halorespirans DSM 13726 chromosome, complete genome',\n", |
||
| 9090 | " 'NZ_CP017116.1 Erysipelothrix rhusiopathiae strain WH13013 chromosome, complete genome',\n", |
||
| 9091 | " 'NZ_CP012692.1 Staphylococcus aureus strain FORC_027, complete genome',\n", |
||
| 9092 | " 'NZ_CP016019.1 Bifidobacterium longum subsp. longum strain AH1206, complete genome',\n", |
||
| 9093 | " 'NZ_CP017247.1 Bacillus licheniformis strain BL1202, complete genome',\n", |
||
| 9094 | " 'NZ_CP016385.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931, complete genome',\n", |
||
| 9095 | " 'NZ_CP016386.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid p931-3904, complete sequence',\n", |
||
| 9096 | " 'NZ_CP016387.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid p931IncI1, complete sequence',\n", |
||
| 9097 | " 'NZ_CP016388.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid p931IncI2, complete sequence',\n", |
||
| 9098 | " 'NZ_CP016389.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid pESBL931, complete sequence',\n", |
||
| 9099 | " 'NZ_CP016390.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid pSLT931, complete sequence',\n", |
||
| 9100 | " 'NZ_CP015217.1 Leptospira alstonii strain GWTS #1 chromosome 1, complete sequence',\n", |
||
| 9101 | " 'NZ_CP015218.1 Leptospira alstonii strain GWTS #1 chromosome 2, complete sequence',\n", |
||
| 9102 | " 'NZ_CP016044.1 Edwardsiella piscicida strain S11-285 chromosome, complete genome',\n", |
||
| 9103 | " 'NZ_CP016445.1 Edwardsiella piscicida strain S11-285 plasmid unnamed1, complete sequence',\n", |
||
| 9104 | " 'NZ_CP017157.1 Streptomyces lydicus strain 103 chromosome, complete genome',\n", |
||
| 9105 | " 'NZ_CP017149.1 Pseudomonas aeruginosa strain ATCC 15692 chromosome, complete genome',\n", |
||
| 9106 | " 'NZ_CP017150.1 Brevibacterium aurantiacum strain SMQ-1335 chromosome, complete genome',\n", |
||
| 9107 | " 'NZ_CP017175.1 Burkholderia mallei strain Bahrain1 chromosome 1, complete sequence',\n", |
||
| 9108 | " 'NZ_CP017176.1 Burkholderia mallei strain Bahrain1 chromosome 2, complete sequence',\n", |
||
| 9109 | " 'NZ_CP016894.1 Bacillus subtilis strain HJ0-6, complete genome',\n", |
||
| 9110 | " 'NZ_CP016895.1 Acinetobacter larvae strain BRTC-1 chromosome, complete genome',\n", |
||
| 9111 | " 'NZ_CP016294.1 Stenotrophomonas rhizophila strain QL-P4, complete genome',\n", |
||
| 9112 | " 'NZ_CP016824.1 Streptomyces sampsonii strain KJ40 chromosome, complete genome',\n", |
||
| 9113 | " 'NZ_CP016341.1 Bordetella holmesii strain H903, complete genome',\n", |
||
| 9114 | " 'NZ_CP016811.1 Klebsiella pneumoniae strain DHQP1002001 chromosome, complete genome',\n", |
||
| 9115 | " 'NZ_CP016810.1 Klebsiella pneumoniae strain DHQP1002001 plasmid p_IncFIB_DHQP1002001, complete sequence',\n", |
||
| 9116 | " 'NZ_CP016812.1 Klebsiella pneumoniae strain DHQP1002001 plasmid p_incR_DHQP1002001, complete sequence',\n", |
||
| 9117 | " 'NZ_CP016342.1 Bordetella parapertussis strain H904, complete genome',\n", |
||
| 9118 | " 'NZ_CP011533.1 Streptomyces noursei ATCC 11455, complete genome',\n", |
||
| 9119 | " 'NZ_CP012334.1 Bordetella sp. H567, complete genome',\n", |
||
| 9120 | " 'NZ_CP013749.1 Lactobacillus plantarum strain KP, complete genome',\n", |
||
| 9121 | " 'NZ_CP013750.1 Lactobacillus plantarum strain KP plasmid unnamed1, complete sequence',\n", |
||
| 9122 | " 'NZ_CP013751.1 Lactobacillus plantarum strain KP plasmid unnamed2, complete sequence',\n", |
||
| 9123 | " 'NZ_CP013752.1 Lactobacillus plantarum strain KP plasmid unnamed3, complete sequence',\n", |
||
| 9124 | " 'NZ_CP013753.1 Lactobacillus plantarum strain DF, complete genome',\n", |
||
| 9125 | " 'NZ_CP013754.1 Lactobacillus plantarum strain DF plasmid unnamed1, complete sequence',\n", |
||
| 9126 | " 'NZ_CP013755.1 Lactobacillus plantarum strain DF plasmid unnamed2, complete sequence',\n", |
||
| 9127 | " 'NZ_CP013756.1 Lactobacillus plantarum strain DF plasmid unnamed3, complete sequence',\n", |
||
| 9128 | " 'NZ_CP016431.1 Bordetella bronchiseptica strain I328 chromosome, complete genome',\n", |
||
| 9129 | " 'NZ_CP029397.1 Acinetobacter defluvii strain WCHA30 chromosome, complete genome',\n", |
||
| 9130 | " 'NZ_CP029389.1 Acinetobacter defluvii strain WCHA30 plasmid p1_010030, complete sequence',\n", |
||
| 9131 | " 'NZ_CP029390.1 Acinetobacter defluvii strain WCHA30 plasmid p2_010030, complete sequence',\n", |
||
| 9132 | " 'NZ_CP029391.1 Acinetobacter defluvii strain WCHA30 plasmid p3_010030, complete sequence',\n", |
||
| 9133 | " 'NZ_CP029392.1 Acinetobacter defluvii strain WCHA30 plasmid p4_010030, complete sequence',\n", |
||
| 9134 | " 'NZ_CP029393.1 Acinetobacter defluvii strain WCHA30 plasmid p5_010030, complete sequence',\n", |
||
| 9135 | " 'NZ_CP029394.1 Acinetobacter defluvii strain WCHA30 plasmid p6_010030, complete sequence',\n", |
||
| 9136 | " 'NZ_CP029395.1 Acinetobacter defluvii strain WCHA30 plasmid p7_010030, complete sequence',\n", |
||
| 9137 | " 'NZ_CP029396.1 Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence',\n", |
||
| 9138 | " 'NZ_CP012375.1 Microcystis aeruginosa NIES-2481, complete genome',\n", |
||
| 9139 | " 'NZ_CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence',\n", |
||
| 9140 | " ...]" |
||
| 9141 | ] |
||
| 9142 | }, |
||
| 9143 | "execution_count": 25, |
||
| 9144 | "metadata": {}, |
||
| 9145 | "output_type": "execute_result" |
||
| 9146 | } |
||
| 9147 | ], |
||
| 9148 | "source": [ |
||
| 9149 | "all_fastas" |
||
| 9150 | ] |
||
| 9151 | }, |
||
| 9152 | { |
||
| 9153 | "cell_type": "code", |
||
| 9154 | "execution_count": 117, |
||
| 9155 | "metadata": {}, |
||
| 9156 | "outputs": [ |
||
| 9157 | { |
||
| 9158 | "data": { |
||
| 9159 | "text/html": [ |
||
| 9160 | "<div>\n", |
||
| 9161 | "<style scoped>\n", |
||
| 9162 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 9163 | " vertical-align: middle;\n", |
||
| 9164 | " }\n", |
||
| 9165 | "\n", |
||
| 9166 | " .dataframe tbody tr th {\n", |
||
| 9167 | " vertical-align: top;\n", |
||
| 9168 | " }\n", |
||
| 9169 | "\n", |
||
| 9170 | " .dataframe thead th {\n", |
||
| 9171 | " text-align: right;\n", |
||
| 9172 | " }\n", |
||
| 9173 | "</style>\n", |
||
| 9174 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 9175 | " <thead>\n", |
||
| 9176 | " <tr style=\"text-align: right;\">\n", |
||
| 9177 | " <th></th>\n", |
||
| 9178 | " <th>n_sequences</th>\n", |
||
| 9179 | " <th>species</th>\n", |
||
| 9180 | " </tr>\n", |
||
| 9181 | " <tr>\n", |
||
| 9182 | " <th>genus</th>\n", |
||
| 9183 | " <th></th>\n", |
||
| 9184 | " <th></th>\n", |
||
| 9185 | " </tr>\n", |
||
| 9186 | " </thead>\n", |
||
| 9187 | " <tbody>\n", |
||
| 9188 | " <tr>\n", |
||
| 9189 | " <th>Bacillus</th>\n", |
||
| 9190 | " <td>1132</td>\n", |
||
| 9191 | " <td>11</td>\n", |
||
| 9192 | " </tr>\n", |
||
| 9193 | " <tr>\n", |
||
| 9194 | " <th>Streptomyces</th>\n", |
||
| 9195 | " <td>743</td>\n", |
||
| 9196 | " <td>5</td>\n", |
||
| 9197 | " </tr>\n", |
||
| 9198 | " <tr>\n", |
||
| 9199 | " <th>Vibrio</th>\n", |
||
| 9200 | " <td>468</td>\n", |
||
| 9201 | " <td>5</td>\n", |
||
| 9202 | " </tr>\n", |
||
| 9203 | " <tr>\n", |
||
| 9204 | " <th>Rhizobium</th>\n", |
||
| 9205 | " <td>325</td>\n", |
||
| 9206 | " <td>6</td>\n", |
||
| 9207 | " </tr>\n", |
||
| 9208 | " <tr>\n", |
||
| 9209 | " <th>Pseudomonas</th>\n", |
||
| 9210 | " <td>304</td>\n", |
||
| 9211 | " <td>8</td>\n", |
||
| 9212 | " </tr>\n", |
||
| 9213 | " <tr>\n", |
||
| 9214 | " <th>Staphylococcus</th>\n", |
||
| 9215 | " <td>301</td>\n", |
||
| 9216 | " <td>6</td>\n", |
||
| 9217 | " </tr>\n", |
||
| 9218 | " <tr>\n", |
||
| 9219 | " <th>Clostridium</th>\n", |
||
| 9220 | " <td>259</td>\n", |
||
| 9221 | " <td>5</td>\n", |
||
| 9222 | " </tr>\n", |
||
| 9223 | " <tr>\n", |
||
| 9224 | " <th>Streptococcus</th>\n", |
||
| 9225 | " <td>222</td>\n", |
||
| 9226 | " <td>6</td>\n", |
||
| 9227 | " </tr>\n", |
||
| 9228 | " <tr>\n", |
||
| 9229 | " <th>Planktothrix</th>\n", |
||
| 9230 | " <td>179</td>\n", |
||
| 9231 | " <td>5</td>\n", |
||
| 9232 | " </tr>\n", |
||
| 9233 | " <tr>\n", |
||
| 9234 | " <th>Stenotrophomonas</th>\n", |
||
| 9235 | " <td>176</td>\n", |
||
| 9236 | " <td>5</td>\n", |
||
| 9237 | " </tr>\n", |
||
| 9238 | " <tr>\n", |
||
| 9239 | " <th>Escherichia</th>\n", |
||
| 9240 | " <td>133</td>\n", |
||
| 9241 | " <td>3</td>\n", |
||
| 9242 | " </tr>\n", |
||
| 9243 | " <tr>\n", |
||
| 9244 | " <th>Paenibacillus</th>\n", |
||
| 9245 | " <td>127</td>\n", |
||
| 9246 | " <td>3</td>\n", |
||
| 9247 | " </tr>\n", |
||
| 9248 | " <tr>\n", |
||
| 9249 | " <th>Listeria</th>\n", |
||
| 9250 | " <td>104</td>\n", |
||
| 9251 | " <td>4</td>\n", |
||
| 9252 | " </tr>\n", |
||
| 9253 | " <tr>\n", |
||
| 9254 | " <th>Corynebacterium</th>\n", |
||
| 9255 | " <td>103</td>\n", |
||
| 9256 | " <td>7</td>\n", |
||
| 9257 | " </tr>\n", |
||
| 9258 | " <tr>\n", |
||
| 9259 | " <th>Klebsiella</th>\n", |
||
| 9260 | " <td>16</td>\n", |
||
| 9261 | " <td>3</td>\n", |
||
| 9262 | " </tr>\n", |
||
| 9263 | " <tr>\n", |
||
| 9264 | " <th>Shigella</th>\n", |
||
| 9265 | " <td>14</td>\n", |
||
| 9266 | " <td>3</td>\n", |
||
| 9267 | " </tr>\n", |
||
| 9268 | " <tr>\n", |
||
| 9269 | " <th>Salmonella</th>\n", |
||
| 9270 | " <td>4</td>\n", |
||
| 9271 | " <td>2</td>\n", |
||
| 9272 | " </tr>\n", |
||
| 9273 | " <tr>\n", |
||
| 9274 | " <th>Enterobacter</th>\n", |
||
| 9275 | " <td>1</td>\n", |
||
| 9276 | " <td>1</td>\n", |
||
| 9277 | " </tr>\n", |
||
| 9278 | " </tbody>\n", |
||
| 9279 | "</table>\n", |
||
| 9280 | "</div>" |
||
| 9281 | ], |
||
| 9282 | "text/plain": [ |
||
| 9283 | " n_sequences species\n", |
||
| 9284 | "genus \n", |
||
| 9285 | "Bacillus 1132 11\n", |
||
| 9286 | "Streptomyces 743 5\n", |
||
| 9287 | "Vibrio 468 5\n", |
||
| 9288 | "Rhizobium 325 6\n", |
||
| 9289 | "Pseudomonas 304 8\n", |
||
| 9290 | "Staphylococcus 301 6\n", |
||
| 9291 | "Clostridium 259 5\n", |
||
| 9292 | "Streptococcus 222 6\n", |
||
| 9293 | "Planktothrix 179 5\n", |
||
| 9294 | "Stenotrophomonas 176 5\n", |
||
| 9295 | "Escherichia 133 3\n", |
||
| 9296 | "Paenibacillus 127 3\n", |
||
| 9297 | "Listeria 104 4\n", |
||
| 9298 | "Corynebacterium 103 7\n", |
||
| 9299 | "Klebsiella 16 3\n", |
||
| 9300 | "Shigella 14 3\n", |
||
| 9301 | "Salmonella 4 2\n", |
||
| 9302 | "Enterobacter 1 1" |
||
| 9303 | ] |
||
| 9304 | }, |
||
| 9305 | "execution_count": 117, |
||
| 9306 | "metadata": {}, |
||
| 9307 | "output_type": "execute_result" |
||
| 9308 | } |
||
| 9309 | ], |
||
| 9310 | "source": [ |
||
| 9311 | "counts = inventory.reset_index().groupby(\"genus\").agg({\"count\", sum}).drop((\"species\"), axis=1)\n", |
||
| 9312 | "counts.columns=[\"n_sequences\",\"species\"]\n", |
||
| 9313 | "counts.sort_values(\"n_sequences\", ascending=False)" |
||
| 9314 | ] |
||
| 9315 | }, |
||
| 9316 | { |
||
| 9317 | "cell_type": "code", |
||
| 9318 | "execution_count": null, |
||
| 9319 | "metadata": {}, |
||
| 9320 | "outputs": [], |
||
| 9321 | "source": [] |
||
| 9322 | } |
||
| 9323 | ], |
||
| 9324 | "metadata": { |
||
| 9325 | "kernelspec": { |
||
| 9326 | "display_name": "Python 3", |
||
| 9327 | "language": "python", |
||
| 9328 | "name": "python3" |
||
| 9329 | }, |
||
| 9330 | "language_info": { |
||
| 9331 | "codemirror_mode": { |
||
| 9332 | "name": "ipython", |
||
| 9333 | "version": 3 |
||
| 9334 | }, |
||
| 9335 | "file_extension": ".py", |
||
| 9336 | "mimetype": "text/x-python", |
||
| 9337 | "name": "python", |
||
| 9338 | "nbconvert_exporter": "python", |
||
| 9339 | "pygments_lexer": "ipython3", |
||
| 9340 | "version": "3.6.8" |
||
| 9341 | }, |
||
| 9342 | "varInspector": { |
||
| 9343 | "cols": { |
||
| 9344 | "lenName": 16, |
||
| 9345 | "lenType": 16, |
||
| 9346 | "lenVar": 40 |
||
| 9347 | }, |
||
| 9348 | "kernels_config": { |
||
| 9349 | "python": { |
||
| 9350 | "delete_cmd_postfix": "", |
||
| 9351 | "delete_cmd_prefix": "del ", |
||
| 9352 | "library": "var_list.py", |
||
| 9353 | "varRefreshCmd": "print(var_dic_list())" |
||
| 9354 | }, |
||
| 9355 | "r": { |
||
| 9356 | "delete_cmd_postfix": ") ", |
||
| 9357 | "delete_cmd_prefix": "rm(", |
||
| 9358 | "library": "var_list.r", |
||
| 9359 | "varRefreshCmd": "cat(var_dic_list()) " |
||
| 9360 | } |
||
| 9361 | }, |
||
| 9362 | "types_to_exclude": [ |
||
| 9363 | "module", |
||
| 9364 | "function", |
||
| 9365 | "builtin_function_or_method", |
||
| 9366 | "instance", |
||
| 9367 | "_Feature" |
||
| 9368 | ], |
||
| 9369 | "window_display": false |
||
| 9370 | } |
||
| 9371 | }, |
||
| 9372 | "nbformat": 4, |
||
| 9373 | "nbformat_minor": 2 |
||
| 9374 | } |