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| a | b/ipynb/embedding 3d visualisation.ipynb | ||
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| 1 | { |
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| 2 | "cells": [ |
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| 3 | { |
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| 4 | "cell_type": "markdown", |
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| 5 | "metadata": {}, |
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| 6 | "source": [ |
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| 7 | "## Exploration of 100d space of genome vectors\n", |
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| 8 | "\n", |
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| 9 | "Genome vectors created by the Dna2VecDataBunch exhibit piculiar patterns. This notebook is dedicated to exploratoin \n", |
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| 10 | "of the bacterial genome space using dimensionality reduction techniques" |
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| 11 | ] |
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| 12 | }, |
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| 13 | { |
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| 14 | "cell_type": "code", |
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| 15 | "execution_count": 2, |
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| 16 | "metadata": {}, |
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| 17 | "outputs": [], |
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| 18 | "source": [ |
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| 19 | "%load_ext autoreload\n", |
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| 20 | "%autoreload 2" |
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| 21 | ] |
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| 22 | }, |
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| 23 | { |
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| 24 | "cell_type": "code", |
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| 25 | "execution_count": 3, |
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| 26 | "metadata": {}, |
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| 27 | "outputs": [], |
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| 28 | "source": [ |
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| 29 | "import sys\n", |
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| 30 | "sys.path.append(\"../mylib/\")\n", |
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| 31 | "\n", |
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| 32 | "from genomic import sequence\n", |
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| 33 | "from genomic.sequence import regex_filter, count_filter\n", |
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| 34 | "from functools import partial\n", |
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| 35 | "import pandas as pd\n", |
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| 36 | "import numpy as np\n", |
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| 37 | "from sklearn.decomposition import PCA\n", |
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| 38 | "from sklearn import manifold,neighbors\n", |
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| 39 | "from scipy.cluster.hierarchy import dendrogram, linkage \n", |
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| 40 | "from matplotlib import pyplot as plt\n", |
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| 41 | "import seaborn as sns; sns.set(color_codes=True)\n", |
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| 42 | "import plotly.plotly as py\n", |
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| 43 | "import plotly.graph_objs as go" |
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| 44 | ] |
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| 45 | }, |
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| 46 | { |
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| 47 | "cell_type": "markdown", |
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| 48 | "metadata": {}, |
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| 49 | "source": [ |
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| 50 | "### Load Data" |
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| 51 | ] |
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| 52 | }, |
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| 53 | { |
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| 54 | "cell_type": "code", |
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| 55 | "execution_count": 4, |
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| 56 | "metadata": {}, |
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| 57 | "outputs": [ |
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| 58 | { |
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| 59 | "name": "stdout", |
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| 60 | "output_type": "stream", |
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| 61 | "text": [ |
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| 62 | "CPU times: user 50.9 s, sys: 1.61 s, total: 52.5 s\n", |
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| 63 | "Wall time: 55.3 s\n" |
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| 64 | ] |
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| 65 | } |
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| 66 | ], |
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| 67 | "source": [ |
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| 68 | "filters=[partial(regex_filter, rx=\"Streptomyces|Bacillus|Vibrio|Streptococcus|Rhizobium|Staphylococcus\"),partial(regex_filter, rx=\"plasmid\", keep=False),\n", |
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| 69 | " partial(count_filter, max_count=599)]\n", |
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| 70 | "data = sequence.Dna2VecList.from_folder(\"/data/genomes/GenSeq_fastas/train\",filters=filters,agg=partial(np.mean, axis=0),n_cpus=7)\n", |
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| 71 | "processors = [\n", |
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| 72 | " sequence.GSFileProcessor(),\n", |
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| 73 | " sequence.GSTokenizeProcessor(tokenizer=sequence.GSTokenizer(ngram=8, skip=0, n_cpus=7)),\n", |
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| 74 | " sequence.Dna2VecProcessor()]\n", |
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| 75 | "%time for p in processors: p.process(data)" |
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| 76 | ] |
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| 77 | }, |
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| 78 | { |
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| 79 | "cell_type": "code", |
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| 80 | "execution_count": 4, |
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| 81 | "metadata": {}, |
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| 82 | "outputs": [ |
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| 83 | { |
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| 84 | "data": { |
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| 85 | "text/plain": [ |
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| 86 | "3169" |
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| 87 | ] |
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| 88 | }, |
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| 89 | "execution_count": 4, |
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| 90 | "metadata": {}, |
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| 91 | "output_type": "execute_result" |
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| 92 | } |
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| 93 | ], |
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| 94 | "source": [ |
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| 95 | "len(data.items)" |
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| 96 | ] |
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| 97 | }, |
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| 98 | { |
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| 99 | "cell_type": "markdown", |
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| 100 | "metadata": {}, |
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| 101 | "source": [ |
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| 102 | "### Genome vectors" |
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| 103 | ] |
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| 104 | }, |
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| 105 | { |
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| 106 | "cell_type": "code", |
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| 107 | "execution_count": 5, |
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| 108 | "metadata": {}, |
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| 109 | "outputs": [], |
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| 110 | "source": [ |
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| 111 | "def log_scale(X):\n", |
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| 112 | " x=np.asarray(X);e=1e-6\n", |
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| 113 | " return np.log10(x+np.abs(x.min())+e) \n", |
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| 114 | "\n", |
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| 115 | "\n", |
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| 116 | "x=np.asarray(data.items)\n", |
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| 117 | "bad_fastas = np.where(np.mean(x,axis=1) == 0.)[0]\n", |
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| 118 | "X = np.delete(x, bad_fastas,0)\n", |
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| 119 | "labelList=[\" \".join(i.split()[1:3]) for i in data.descriptions]\n", |
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| 120 | "labelList=np.delete(np.asarray(labelList), bad_fastas)\n", |
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| 121 | "vocab=list(np.unique(labelList))\n", |
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| 122 | "y=[vocab.index(x) for x in labelList]" |
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| 123 | ] |
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| 124 | }, |
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| 125 | { |
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| 126 | "cell_type": "code", |
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| 127 | "execution_count": null, |
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| 128 | "metadata": {}, |
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| 129 | "outputs": [], |
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| 130 | "source": [] |
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| 131 | }, |
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| 132 | { |
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| 133 | "cell_type": "markdown", |
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| 134 | "metadata": {}, |
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| 135 | "source": [ |
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| 136 | "## Correlation Distance in log-scaled space" |
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| 137 | ] |
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| 138 | }, |
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| 139 | { |
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| 140 | "cell_type": "markdown", |
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| 141 | "metadata": {}, |
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| 142 | "source": [ |
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| 143 | "### tSNE" |
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| 144 | ] |
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| 145 | }, |
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| 146 | { |
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| 147 | "cell_type": "code", |
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| 148 | "execution_count": null, |
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| 149 | "metadata": {}, |
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| 150 | "outputs": [], |
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| 151 | "source": [ |
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| 152 | "tsne = manifold.TSNE(n_components=3, init='pca', perplexity=10, metric=\"correlation\",random_state=0)\n", |
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| 153 | "%time X3 = tsne.fit_transform(log_scale(X))" |
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| 154 | ] |
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| 155 | }, |
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| 156 | { |
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| 157 | "cell_type": "code", |
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| 158 | "execution_count": 12, |
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| 159 | "metadata": {}, |
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| 160 | "outputs": [], |
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| 161 | "source": [ |
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| 162 | "genus = [i.split()[0] for i in labelList]\n", |
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| 163 | "genus_vocab=list(np.unique(genus))\n", |
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| 164 | "y=[genus_vocab.index(x) for x in genus]\n", |
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| 165 | "genus_vocab\n", |
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| 166 | "\n", |
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| 167 | "X3_df = pd.DataFrame(data=X3, columns=[\"pc1\",'pc2','pc3'], index=labelList)\n", |
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| 168 | "\n", |
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| 169 | "X3_df[\"genus\"]=genus\n", |
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| 170 | "X3_df[\"y\"]=y\n", |
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| 171 | "\n", |
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| 172 | "genus_df=X3_df.groupby(\"genus\").agg({\"pc1\": list, \"pc2\":list,\"pc3\":list,\"y\":np.mean})" |
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| 173 | ] |
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| 174 | }, |
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| 175 | { |
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| 176 | "cell_type": "markdown", |
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| 177 | "metadata": {}, |
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| 178 | "source": [ |
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| 179 | "### Correlation Distance visualisation" |
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| 180 | ] |
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| 181 | }, |
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| 182 | { |
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| 183 | "cell_type": "code", |
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| 184 | "execution_count": 16, |
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| 185 | "metadata": {}, |
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| 186 | "outputs": [ |
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| 187 | { |
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| 188 | "name": "stderr", |
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| 189 | "output_type": "stream", |
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| 190 | "text": [ |
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| 191 | "/home/serge/anaconda3/envs/bio/lib/python3.6/site-packages/IPython/core/display.py:689: UserWarning:\n", |
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| 192 | "\n", |
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| 193 | "Consider using IPython.display.IFrame instead\n", |
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| 194 | "\n" |
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| 195 | ] |
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| 196 | }, |
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| 197 | { |
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| 198 | "data": { |
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| 199 | "text/html": [ |
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| 200 | "<iframe id=\"igraph\" scrolling=\"no\" style=\"border:none;\" seamless=\"seamless\" src=\"https://plot.ly/~sergeman/6.embed\" height=\"1000px\" width=\"1000px\"></iframe>" |
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| 201 | ], |
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| 202 | "text/plain": [ |
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| 203 | "<plotly.tools.PlotlyDisplay object>" |
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| 204 | ] |
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| 205 | }, |
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| 206 | "execution_count": 16, |
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| 207 | "metadata": {}, |
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| 208 | "output_type": "execute_result" |
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| 209 | } |
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| 210 | ], |
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| 211 | "source": [ |
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| 212 | "data=[]\n", |
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| 213 | "for g in genus_df.index:\n", |
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| 214 | " trace = go.Scatter3d(\n", |
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| 215 | " name = str(g),\n", |
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| 216 | " x=genus_df.loc[g,\"pc1\"],\n", |
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| 217 | " y=genus_df.loc[g,\"pc2\"],\n", |
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| 218 | " z=genus_df.loc[g,\"pc3\"],\n", |
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| 219 | " mode='markers',\n", |
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| 220 | " marker=dict(\n", |
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| 221 | " size=8,\n", |
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| 222 | " color=genus_df.loc[g,\"y\"], # set color to an array/list of desired values\n", |
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| 223 | " colorscale='Jet', # choose a colorscale\n", |
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| 224 | " opacity=0.5)\n", |
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| 225 | " )\n", |
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| 226 | "\n", |
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| 227 | " data.append(trace)\n", |
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| 228 | " \n", |
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| 229 | "\n", |
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| 230 | "layout = go.Layout(\n", |
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| 231 | " width=1000,\n", |
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| 232 | " height=1000,\n", |
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| 233 | " margin=dict(\n", |
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| 234 | " l=0,\n", |
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| 235 | " r=0,\n", |
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| 236 | " b=0,\n", |
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| 237 | " t=0\n", |
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| 238 | " )\n", |
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| 239 | ")\n", |
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| 240 | "fig = go.Figure(data=data, layout=layout)\n", |
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| 241 | "py.iplot(fig, filename='correlation distance metric by genus')" |
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| 242 | ] |
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| 243 | }, |
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| 244 | { |
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| 245 | "cell_type": "markdown", |
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| 246 | "metadata": {}, |
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| 247 | "source": [ |
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| 248 | "## Eucleadian Distance in log-scaled space" |
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| 249 | ] |
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| 250 | }, |
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| 251 | { |
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| 252 | "cell_type": "markdown", |
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| 253 | "metadata": {}, |
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| 254 | "source": [ |
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| 255 | "### tSNE" |
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| 256 | ] |
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| 257 | }, |
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| 258 | { |
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| 259 | "cell_type": "code", |
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| 260 | "execution_count": 20, |
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| 261 | "metadata": {}, |
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| 262 | "outputs": [ |
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| 263 | { |
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| 264 | "name": "stdout", |
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| 265 | "output_type": "stream", |
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| 266 | "text": [ |
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| 267 | "CPU times: user 1min 13s, sys: 308 ms, total: 1min 14s\n", |
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| 268 | "Wall time: 1min 13s\n" |
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| 269 | ] |
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| 270 | } |
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| 271 | ], |
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| 272 | "source": [ |
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| 273 | "tsne = manifold.TSNE(n_components=3, init='pca', perplexity=30,random_state=0)\n", |
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| 274 | "%time X3 = tsne.fit_transform(log_scale(X))" |
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| 275 | ] |
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| 276 | }, |
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| 277 | { |
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| 278 | "cell_type": "code", |
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| 279 | "execution_count": 21, |
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| 280 | "metadata": {}, |
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| 281 | "outputs": [], |
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| 282 | "source": [ |
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| 283 | "genus = [i.split()[0] for i in labelList]\n", |
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| 284 | "genus_vocab=list(np.unique(genus))\n", |
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| 285 | "y=[genus_vocab.index(x) for x in genus]\n", |
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| 286 | "genus_vocab\n", |
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| 287 | "\n", |
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| 288 | "X3_df = pd.DataFrame(data=X3, columns=[\"pc1\",'pc2','pc3'], index=labelList)\n", |
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| 289 | "\n", |
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| 290 | "X3_df[\"genus\"]=genus\n", |
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| 291 | "X3_df[\"y\"]=y\n", |
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| 292 | "\n", |
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| 293 | "genus_df=X3_df.groupby(\"genus\").agg({\"pc1\": list, \"pc2\":list,\"pc3\":list,\"y\":np.mean})" |
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| 294 | ] |
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| 295 | }, |
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| 296 | { |
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| 297 | "cell_type": "markdown", |
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| 298 | "metadata": {}, |
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| 299 | "source": [ |
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| 300 | "### Eucleadian Distance Visualisation" |
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| 301 | ] |
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| 302 | }, |
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| 303 | { |
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| 304 | "cell_type": "code", |
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| 305 | "execution_count": 22, |
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| 306 | "metadata": {}, |
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| 307 | "outputs": [ |
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| 308 | { |
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| 309 | "name": "stderr", |
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| 310 | "output_type": "stream", |
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| 311 | "text": [ |
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| 312 | "/home/serge/anaconda3/envs/bio/lib/python3.6/site-packages/IPython/core/display.py:689: UserWarning:\n", |
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| 313 | "\n", |
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| 314 | "Consider using IPython.display.IFrame instead\n", |
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| 315 | "\n" |
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| 316 | ] |
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| 317 | }, |
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| 318 | { |
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| 319 | "data": { |
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| 320 | "text/html": [ |
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| 321 | "<iframe id=\"igraph\" scrolling=\"no\" style=\"border:none;\" seamless=\"seamless\" src=\"https://plot.ly/~sergeman/8.embed\" height=\"1000px\" width=\"1000px\"></iframe>" |
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| 322 | ], |
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| 323 | "text/plain": [ |
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| 324 | "<plotly.tools.PlotlyDisplay object>" |
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| 325 | ] |
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| 326 | }, |
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| 327 | "execution_count": 22, |
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| 328 | "metadata": {}, |
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| 329 | "output_type": "execute_result" |
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| 330 | } |
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| 331 | ], |
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| 332 | "source": [ |
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| 333 | "data=[]\n", |
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| 334 | "for g in genus_df.index:\n", |
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| 335 | " trace = go.Scatter3d(\n", |
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| 336 | " name = str(g),\n", |
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| 337 | " x=genus_df.loc[g,\"pc1\"],\n", |
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| 338 | " y=genus_df.loc[g,\"pc2\"],\n", |
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| 339 | " z=genus_df.loc[g,\"pc3\"],\n", |
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| 340 | " mode='markers',\n", |
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| 341 | " marker=dict(\n", |
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| 342 | " size=8,\n", |
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| 343 | " color=genus_df.loc[g,\"y\"], # set color to an array/list of desired values\n", |
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| 344 | " colorscale='Jet', # choose a colorscale\n", |
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| 345 | " opacity=0.5)\n", |
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| 346 | " )\n", |
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| 347 | "\n", |
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| 348 | " data.append(trace)\n", |
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| 349 | " \n", |
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| 350 | "\n", |
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| 351 | "layout = go.Layout(\n", |
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| 352 | " width=1000,\n", |
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| 353 | " height=1000,\n", |
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| 354 | " margin=dict(\n", |
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| 355 | " l=0,\n", |
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| 356 | " r=0,\n", |
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| 357 | " b=0,\n", |
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| 358 | " t=0\n", |
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| 359 | " )\n", |
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| 360 | ")\n", |
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| 361 | "fig = go.Figure(data=data, layout=layout)\n", |
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| 362 | "py.iplot(fig, filename='eucledian distance metric by genus')" |
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| 363 | ] |
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| 364 | }, |
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| 365 | { |
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| 366 | "cell_type": "markdown", |
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| 367 | "metadata": {}, |
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| 368 | "source": [ |
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| 369 | "## Genome Inventory" |
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| 370 | ] |
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| 371 | }, |
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| 372 | { |
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| 373 | "cell_type": "code", |
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| 374 | "execution_count": 23, |
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| 375 | "metadata": {}, |
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| 376 | "outputs": [], |
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| 377 | "source": [ |
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| 378 | "# DB=\"/data/genomes/GenSeq_fastas/train\"\n", |
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| 379 | "DB='/media/serge/SharedSSD/data/genomes/ncbi-genomes-2019-04-07/bacterial genomes'" |
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| 380 | ] |
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| 381 | }, |
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| 382 | { |
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| 383 | "cell_type": "code", |
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| 384 | "execution_count": null, |
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| 385 | "metadata": {}, |
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| 386 | "outputs": [], |
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| 387 | "source": [ |
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| 388 | "all_fastas = sequence.Dna2VecList.from_folder(DB).descriptions" |
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| 389 | ] |
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| 390 | }, |
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| 391 | { |
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| 392 | "cell_type": "code", |
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| 393 | "execution_count": 26, |
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| 394 | "metadata": {}, |
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| 395 | "outputs": [], |
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| 396 | "source": [ |
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| 397 | "inventory = pd.DataFrame(data=[l.split()[1:3] for l in all_fastas], columns=[\"genus\",\"species\" ])" |
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| 398 | ] |
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| 399 | }, |
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| 400 | { |
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| 401 | "cell_type": "code", |
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| 402 | "execution_count": 30, |
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| 403 | "metadata": { |
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| 404 | "scrolled": true |
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| 405 | }, |
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| 406 | "outputs": [ |
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| 407 | { |
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| 408 | "data": { |
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| 409 | "text/html": [ |
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| 410 | "<div>\n", |
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| 411 | "<style scoped>\n", |
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| 412 | " .dataframe tbody tr th:only-of-type {\n", |
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| 413 | " vertical-align: middle;\n", |
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| 414 | " }\n", |
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| 415 | "\n", |
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| 416 | " .dataframe tbody tr th {\n", |
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| 417 | " vertical-align: top;\n", |
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| 418 | " }\n", |
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| 419 | "\n", |
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| 420 | " .dataframe thead th {\n", |
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| 421 | " text-align: right;\n", |
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| 422 | " }\n", |
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| 423 | "</style>\n", |
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| 424 | "<table border=\"1\" class=\"dataframe\">\n", |
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| 425 | " <thead>\n", |
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| 426 | " <tr style=\"text-align: right;\">\n", |
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| 427 | " <th></th>\n", |
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| 428 | " <th>species</th>\n", |
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| 429 | " </tr>\n", |
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| 430 | " <tr>\n", |
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| 431 | " <th>genus</th>\n", |
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| 432 | " <th></th>\n", |
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| 433 | " </tr>\n", |
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| 434 | " </thead>\n", |
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| 435 | " <tbody>\n", |
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| 436 | " <tr>\n", |
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| 437 | " <th>Escherichia</th>\n", |
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| 438 | " <td>2239</td>\n", |
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| 439 | " </tr>\n", |
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| 440 | " <tr>\n", |
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| 441 | " <th>Klebsiella</th>\n", |
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| 442 | " <td>1718</td>\n", |
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| 443 | " </tr>\n", |
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| 444 | " <tr>\n", |
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| 445 | " <th>Salmonella</th>\n", |
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| 446 | " <td>1183</td>\n", |
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| 447 | " </tr>\n", |
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| 448 | " <tr>\n", |
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| 449 | " <th>Bacillus</th>\n", |
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| 450 | " <td>1172</td>\n", |
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| 451 | " </tr>\n", |
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| 452 | " <tr>\n", |
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| 453 | " <th>Lactobacillus</th>\n", |
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| 454 | " <td>953</td>\n", |
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| 455 | " </tr>\n", |
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| 456 | " <tr>\n", |
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| 457 | " <th>Staphylococcus</th>\n", |
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| 458 | " <td>889</td>\n", |
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| 459 | " </tr>\n", |
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| 460 | " <tr>\n", |
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| 461 | " <th>Burkholderia</th>\n", |
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| 462 | " <td>650</td>\n", |
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| 463 | " </tr>\n", |
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| 464 | " <tr>\n", |
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| 465 | " <th>Enterococcus</th>\n", |
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| 466 | " <td>626</td>\n", |
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| 467 | " </tr>\n", |
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| 468 | " <tr>\n", |
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| 469 | " <th>Pseudomonas</th>\n", |
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| 470 | " <td>613</td>\n", |
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| 471 | " </tr>\n", |
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| 472 | " <tr>\n", |
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| 473 | " <th>Streptococcus</th>\n", |
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| 474 | " <td>564</td>\n", |
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| 475 | " </tr>\n", |
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| 476 | " <tr>\n", |
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| 477 | " <th>Acinetobacter</th>\n", |
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| 478 | " <td>531</td>\n", |
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| 479 | " </tr>\n", |
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| 480 | " <tr>\n", |
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| 481 | " <th>Bordetella</th>\n", |
||
| 482 | " <td>504</td>\n", |
||
| 483 | " </tr>\n", |
||
| 484 | " <tr>\n", |
||
| 485 | " <th>Vibrio</th>\n", |
||
| 486 | " <td>474</td>\n", |
||
| 487 | " </tr>\n", |
||
| 488 | " <tr>\n", |
||
| 489 | " <th>Xanthomonas</th>\n", |
||
| 490 | " <td>395</td>\n", |
||
| 491 | " </tr>\n", |
||
| 492 | " <tr>\n", |
||
| 493 | " <th>Mycobacterium</th>\n", |
||
| 494 | " <td>368</td>\n", |
||
| 495 | " </tr>\n", |
||
| 496 | " <tr>\n", |
||
| 497 | " <th>Borrelia</th>\n", |
||
| 498 | " <td>347</td>\n", |
||
| 499 | " </tr>\n", |
||
| 500 | " <tr>\n", |
||
| 501 | " <th>Campylobacter</th>\n", |
||
| 502 | " <td>339</td>\n", |
||
| 503 | " </tr>\n", |
||
| 504 | " <tr>\n", |
||
| 505 | " <th>Rhizobium</th>\n", |
||
| 506 | " <td>307</td>\n", |
||
| 507 | " </tr>\n", |
||
| 508 | " <tr>\n", |
||
| 509 | " <th>Enterobacter</th>\n", |
||
| 510 | " <td>298</td>\n", |
||
| 511 | " </tr>\n", |
||
| 512 | " <tr>\n", |
||
| 513 | " <th>Mycoplasma</th>\n", |
||
| 514 | " <td>290</td>\n", |
||
| 515 | " </tr>\n", |
||
| 516 | " <tr>\n", |
||
| 517 | " <th>Corynebacterium</th>\n", |
||
| 518 | " <td>258</td>\n", |
||
| 519 | " </tr>\n", |
||
| 520 | " <tr>\n", |
||
| 521 | " <th>Phaeobacter</th>\n", |
||
| 522 | " <td>256</td>\n", |
||
| 523 | " </tr>\n", |
||
| 524 | " <tr>\n", |
||
| 525 | " <th>Yersinia</th>\n", |
||
| 526 | " <td>243</td>\n", |
||
| 527 | " </tr>\n", |
||
| 528 | " <tr>\n", |
||
| 529 | " <th>Brucella</th>\n", |
||
| 530 | " <td>233</td>\n", |
||
| 531 | " </tr>\n", |
||
| 532 | " <tr>\n", |
||
| 533 | " <th>Clostridium</th>\n", |
||
| 534 | " <td>228</td>\n", |
||
| 535 | " </tr>\n", |
||
| 536 | " <tr>\n", |
||
| 537 | " <th>Listeria</th>\n", |
||
| 538 | " <td>227</td>\n", |
||
| 539 | " </tr>\n", |
||
| 540 | " <tr>\n", |
||
| 541 | " <th>Streptomyces</th>\n", |
||
| 542 | " <td>225</td>\n", |
||
| 543 | " </tr>\n", |
||
| 544 | " <tr>\n", |
||
| 545 | " <th>Chlamydia</th>\n", |
||
| 546 | " <td>202</td>\n", |
||
| 547 | " </tr>\n", |
||
| 548 | " <tr>\n", |
||
| 549 | " <th>Helicobacter</th>\n", |
||
| 550 | " <td>187</td>\n", |
||
| 551 | " </tr>\n", |
||
| 552 | " <tr>\n", |
||
| 553 | " <th>Candidatus</th>\n", |
||
| 554 | " <td>187</td>\n", |
||
| 555 | " </tr>\n", |
||
| 556 | " <tr>\n", |
||
| 557 | " <th>...</th>\n", |
||
| 558 | " <td>...</td>\n", |
||
| 559 | " </tr>\n", |
||
| 560 | " <tr>\n", |
||
| 561 | " <th>'Deinococcus</th>\n", |
||
| 562 | " <td>1</td>\n", |
||
| 563 | " </tr>\n", |
||
| 564 | " <tr>\n", |
||
| 565 | " <th>Mariniflexile</th>\n", |
||
| 566 | " <td>1</td>\n", |
||
| 567 | " </tr>\n", |
||
| 568 | " <tr>\n", |
||
| 569 | " <th>Marinithermus</th>\n", |
||
| 570 | " <td>1</td>\n", |
||
| 571 | " </tr>\n", |
||
| 572 | " <tr>\n", |
||
| 573 | " <th>Lactobacillales</th>\n", |
||
| 574 | " <td>1</td>\n", |
||
| 575 | " </tr>\n", |
||
| 576 | " <tr>\n", |
||
| 577 | " <th>Marinobacterium</th>\n", |
||
| 578 | " <td>1</td>\n", |
||
| 579 | " </tr>\n", |
||
| 580 | " <tr>\n", |
||
| 581 | " <th>Megamonas</th>\n", |
||
| 582 | " <td>1</td>\n", |
||
| 583 | " </tr>\n", |
||
| 584 | " <tr>\n", |
||
| 585 | " <th>Melioribacter</th>\n", |
||
| 586 | " <td>1</td>\n", |
||
| 587 | " </tr>\n", |
||
| 588 | " <tr>\n", |
||
| 589 | " <th>Melittangium</th>\n", |
||
| 590 | " <td>1</td>\n", |
||
| 591 | " </tr>\n", |
||
| 592 | " <tr>\n", |
||
| 593 | " <th>Methylobacillus</th>\n", |
||
| 594 | " <td>1</td>\n", |
||
| 595 | " </tr>\n", |
||
| 596 | " <tr>\n", |
||
| 597 | " <th>Methylocaldum</th>\n", |
||
| 598 | " <td>1</td>\n", |
||
| 599 | " </tr>\n", |
||
| 600 | " <tr>\n", |
||
| 601 | " <th>Magnetococcus</th>\n", |
||
| 602 | " <td>1</td>\n", |
||
| 603 | " </tr>\n", |
||
| 604 | " <tr>\n", |
||
| 605 | " <th>Mageeibacillus</th>\n", |
||
| 606 | " <td>1</td>\n", |
||
| 607 | " </tr>\n", |
||
| 608 | " <tr>\n", |
||
| 609 | " <th>Lysinimonas</th>\n", |
||
| 610 | " <td>1</td>\n", |
||
| 611 | " </tr>\n", |
||
| 612 | " <tr>\n", |
||
| 613 | " <th>Luteitalea</th>\n", |
||
| 614 | " <td>1</td>\n", |
||
| 615 | " </tr>\n", |
||
| 616 | " <tr>\n", |
||
| 617 | " <th>Lacunisphaera</th>\n", |
||
| 618 | " <td>1</td>\n", |
||
| 619 | " </tr>\n", |
||
| 620 | " <tr>\n", |
||
| 621 | " <th>Lautropia</th>\n", |
||
| 622 | " <td>1</td>\n", |
||
| 623 | " </tr>\n", |
||
| 624 | " <tr>\n", |
||
| 625 | " <th>Leadbetterella</th>\n", |
||
| 626 | " <td>1</td>\n", |
||
| 627 | " </tr>\n", |
||
| 628 | " <tr>\n", |
||
| 629 | " <th>Leminorella</th>\n", |
||
| 630 | " <td>1</td>\n", |
||
| 631 | " </tr>\n", |
||
| 632 | " <tr>\n", |
||
| 633 | " <th>Lentibacillus</th>\n", |
||
| 634 | " <td>1</td>\n", |
||
| 635 | " </tr>\n", |
||
| 636 | " <tr>\n", |
||
| 637 | " <th>Lentzea</th>\n", |
||
| 638 | " <td>1</td>\n", |
||
| 639 | " </tr>\n", |
||
| 640 | " <tr>\n", |
||
| 641 | " <th>Leptothrix</th>\n", |
||
| 642 | " <td>1</td>\n", |
||
| 643 | " </tr>\n", |
||
| 644 | " <tr>\n", |
||
| 645 | " <th>Levyella</th>\n", |
||
| 646 | " <td>1</td>\n", |
||
| 647 | " </tr>\n", |
||
| 648 | " <tr>\n", |
||
| 649 | " <th>Limnobaculum</th>\n", |
||
| 650 | " <td>1</td>\n", |
||
| 651 | " </tr>\n", |
||
| 652 | " <tr>\n", |
||
| 653 | " <th>Limnochorda</th>\n", |
||
| 654 | " <td>1</td>\n", |
||
| 655 | " </tr>\n", |
||
| 656 | " <tr>\n", |
||
| 657 | " <th>Litorilituus</th>\n", |
||
| 658 | " <td>1</td>\n", |
||
| 659 | " </tr>\n", |
||
| 660 | " <tr>\n", |
||
| 661 | " <th>Lonsdalea</th>\n", |
||
| 662 | " <td>1</td>\n", |
||
| 663 | " </tr>\n", |
||
| 664 | " <tr>\n", |
||
| 665 | " <th>Luteibacter</th>\n", |
||
| 666 | " <td>1</td>\n", |
||
| 667 | " </tr>\n", |
||
| 668 | " <tr>\n", |
||
| 669 | " <th>Luteipulveratus</th>\n", |
||
| 670 | " <td>1</td>\n", |
||
| 671 | " </tr>\n", |
||
| 672 | " <tr>\n", |
||
| 673 | " <th>secondary</th>\n", |
||
| 674 | " <td>1</td>\n", |
||
| 675 | " </tr>\n", |
||
| 676 | " <tr>\n", |
||
| 677 | " <th>plasmid1</th>\n", |
||
| 678 | " <td>0</td>\n", |
||
| 679 | " </tr>\n", |
||
| 680 | " </tbody>\n", |
||
| 681 | "</table>\n", |
||
| 682 | "<p>1120 rows × 1 columns</p>\n", |
||
| 683 | "</div>" |
||
| 684 | ], |
||
| 685 | "text/plain": [ |
||
| 686 | " species\n", |
||
| 687 | "genus \n", |
||
| 688 | "Escherichia 2239\n", |
||
| 689 | "Klebsiella 1718\n", |
||
| 690 | "Salmonella 1183\n", |
||
| 691 | "Bacillus 1172\n", |
||
| 692 | "Lactobacillus 953\n", |
||
| 693 | "Staphylococcus 889\n", |
||
| 694 | "Burkholderia 650\n", |
||
| 695 | "Enterococcus 626\n", |
||
| 696 | "Pseudomonas 613\n", |
||
| 697 | "Streptococcus 564\n", |
||
| 698 | "Acinetobacter 531\n", |
||
| 699 | "Bordetella 504\n", |
||
| 700 | "Vibrio 474\n", |
||
| 701 | "Xanthomonas 395\n", |
||
| 702 | "Mycobacterium 368\n", |
||
| 703 | "Borrelia 347\n", |
||
| 704 | "Campylobacter 339\n", |
||
| 705 | "Rhizobium 307\n", |
||
| 706 | "Enterobacter 298\n", |
||
| 707 | "Mycoplasma 290\n", |
||
| 708 | "Corynebacterium 258\n", |
||
| 709 | "Phaeobacter 256\n", |
||
| 710 | "Yersinia 243\n", |
||
| 711 | "Brucella 233\n", |
||
| 712 | "Clostridium 228\n", |
||
| 713 | "Listeria 227\n", |
||
| 714 | "Streptomyces 225\n", |
||
| 715 | "Chlamydia 202\n", |
||
| 716 | "Helicobacter 187\n", |
||
| 717 | "Candidatus 187\n", |
||
| 718 | "... ...\n", |
||
| 719 | "'Deinococcus 1\n", |
||
| 720 | "Mariniflexile 1\n", |
||
| 721 | "Marinithermus 1\n", |
||
| 722 | "Lactobacillales 1\n", |
||
| 723 | "Marinobacterium 1\n", |
||
| 724 | "Megamonas 1\n", |
||
| 725 | "Melioribacter 1\n", |
||
| 726 | "Melittangium 1\n", |
||
| 727 | "Methylobacillus 1\n", |
||
| 728 | "Methylocaldum 1\n", |
||
| 729 | "Magnetococcus 1\n", |
||
| 730 | "Mageeibacillus 1\n", |
||
| 731 | "Lysinimonas 1\n", |
||
| 732 | "Luteitalea 1\n", |
||
| 733 | "Lacunisphaera 1\n", |
||
| 734 | "Lautropia 1\n", |
||
| 735 | "Leadbetterella 1\n", |
||
| 736 | "Leminorella 1\n", |
||
| 737 | "Lentibacillus 1\n", |
||
| 738 | "Lentzea 1\n", |
||
| 739 | "Leptothrix 1\n", |
||
| 740 | "Levyella 1\n", |
||
| 741 | "Limnobaculum 1\n", |
||
| 742 | "Limnochorda 1\n", |
||
| 743 | "Litorilituus 1\n", |
||
| 744 | "Lonsdalea 1\n", |
||
| 745 | "Luteibacter 1\n", |
||
| 746 | "Luteipulveratus 1\n", |
||
| 747 | "secondary 1\n", |
||
| 748 | "plasmid1 0\n", |
||
| 749 | "\n", |
||
| 750 | "[1120 rows x 1 columns]" |
||
| 751 | ] |
||
| 752 | }, |
||
| 753 | "execution_count": 30, |
||
| 754 | "metadata": {}, |
||
| 755 | "output_type": "execute_result" |
||
| 756 | } |
||
| 757 | ], |
||
| 758 | "source": [ |
||
| 759 | "inventory.groupby(\"genus\").agg({\"species\":\"count\"}).sort_values(\"species\",ascending=False)" |
||
| 760 | ] |
||
| 761 | }, |
||
| 762 | { |
||
| 763 | "cell_type": "code", |
||
| 764 | "execution_count": 24, |
||
| 765 | "metadata": { |
||
| 766 | "scrolled": false |
||
| 767 | }, |
||
| 768 | "outputs": [ |
||
| 769 | { |
||
| 770 | "data": { |
||
| 771 | "text/html": [ |
||
| 772 | "<div>\n", |
||
| 773 | "<style scoped>\n", |
||
| 774 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 775 | " vertical-align: middle;\n", |
||
| 776 | " }\n", |
||
| 777 | "\n", |
||
| 778 | " .dataframe tbody tr th {\n", |
||
| 779 | " vertical-align: top;\n", |
||
| 780 | " }\n", |
||
| 781 | "\n", |
||
| 782 | " .dataframe thead th {\n", |
||
| 783 | " text-align: right;\n", |
||
| 784 | " }\n", |
||
| 785 | "</style>\n", |
||
| 786 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 787 | " <thead>\n", |
||
| 788 | " <tr style=\"text-align: right;\">\n", |
||
| 789 | " <th></th>\n", |
||
| 790 | " <th></th>\n", |
||
| 791 | " <th>count</th>\n", |
||
| 792 | " </tr>\n", |
||
| 793 | " <tr>\n", |
||
| 794 | " <th>genus</th>\n", |
||
| 795 | " <th>species</th>\n", |
||
| 796 | " <th></th>\n", |
||
| 797 | " </tr>\n", |
||
| 798 | " </thead>\n", |
||
| 799 | " <tbody>\n", |
||
| 800 | " <tr>\n", |
||
| 801 | " <th>'Catharanthus</th>\n", |
||
| 802 | " <th>roseus'</th>\n", |
||
| 803 | " <td>2</td>\n", |
||
| 804 | " </tr>\n", |
||
| 805 | " <tr>\n", |
||
| 806 | " <th>'Deinococcus</th>\n", |
||
| 807 | " <th>soli'</th>\n", |
||
| 808 | " <td>1</td>\n", |
||
| 809 | " </tr>\n", |
||
| 810 | " <tr>\n", |
||
| 811 | " <th>'Nostoc</th>\n", |
||
| 812 | " <th>azollae'</th>\n", |
||
| 813 | " <td>3</td>\n", |
||
| 814 | " </tr>\n", |
||
| 815 | " <tr>\n", |
||
| 816 | " <th>18,711,729</th>\n", |
||
| 817 | " <th>reads</th>\n", |
||
| 818 | " <td>1</td>\n", |
||
| 819 | " </tr>\n", |
||
| 820 | " <tr>\n", |
||
| 821 | " <th>Acaryochloris</th>\n", |
||
| 822 | " <th>marina</th>\n", |
||
| 823 | " <td>10</td>\n", |
||
| 824 | " </tr>\n", |
||
| 825 | " <tr>\n", |
||
| 826 | " <th rowspan=\"10\" valign=\"top\">Acetobacter</th>\n", |
||
| 827 | " <th>aceti</th>\n", |
||
| 828 | " <td>1</td>\n", |
||
| 829 | " </tr>\n", |
||
| 830 | " <tr>\n", |
||
| 831 | " <th>ascendens</th>\n", |
||
| 832 | " <td>1</td>\n", |
||
| 833 | " </tr>\n", |
||
| 834 | " <tr>\n", |
||
| 835 | " <th>orientalis</th>\n", |
||
| 836 | " <td>2</td>\n", |
||
| 837 | " </tr>\n", |
||
| 838 | " <tr>\n", |
||
| 839 | " <th>oryzifermentans</th>\n", |
||
| 840 | " <td>1</td>\n", |
||
| 841 | " </tr>\n", |
||
| 842 | " <tr>\n", |
||
| 843 | " <th>pasteurianus</th>\n", |
||
| 844 | " <td>91</td>\n", |
||
| 845 | " </tr>\n", |
||
| 846 | " <tr>\n", |
||
| 847 | " <th>persici</th>\n", |
||
| 848 | " <td>2</td>\n", |
||
| 849 | " </tr>\n", |
||
| 850 | " <tr>\n", |
||
| 851 | " <th>pomorum</th>\n", |
||
| 852 | " <td>7</td>\n", |
||
| 853 | " </tr>\n", |
||
| 854 | " <tr>\n", |
||
| 855 | " <th>senegalensis</th>\n", |
||
| 856 | " <td>2</td>\n", |
||
| 857 | " </tr>\n", |
||
| 858 | " <tr>\n", |
||
| 859 | " <th>sp.</th>\n", |
||
| 860 | " <td>7</td>\n", |
||
| 861 | " </tr>\n", |
||
| 862 | " <tr>\n", |
||
| 863 | " <th>tropicalis</th>\n", |
||
| 864 | " <td>2</td>\n", |
||
| 865 | " </tr>\n", |
||
| 866 | " <tr>\n", |
||
| 867 | " <th>Acetobacterium</th>\n", |
||
| 868 | " <th>woodii</th>\n", |
||
| 869 | " <td>1</td>\n", |
||
| 870 | " </tr>\n", |
||
| 871 | " <tr>\n", |
||
| 872 | " <th>Acetohalobium</th>\n", |
||
| 873 | " <th>arabaticum</th>\n", |
||
| 874 | " <td>1</td>\n", |
||
| 875 | " </tr>\n", |
||
| 876 | " <tr>\n", |
||
| 877 | " <th>Acetomicrobium</th>\n", |
||
| 878 | " <th>mobile</th>\n", |
||
| 879 | " <td>1</td>\n", |
||
| 880 | " </tr>\n", |
||
| 881 | " <tr>\n", |
||
| 882 | " <th rowspan=\"4\" valign=\"top\">Acholeplasma</th>\n", |
||
| 883 | " <th>axanthum</th>\n", |
||
| 884 | " <td>1</td>\n", |
||
| 885 | " </tr>\n", |
||
| 886 | " <tr>\n", |
||
| 887 | " <th>hippikon</th>\n", |
||
| 888 | " <td>2</td>\n", |
||
| 889 | " </tr>\n", |
||
| 890 | " <tr>\n", |
||
| 891 | " <th>laidlawii</th>\n", |
||
| 892 | " <td>2</td>\n", |
||
| 893 | " </tr>\n", |
||
| 894 | " <tr>\n", |
||
| 895 | " <th>oculi</th>\n", |
||
| 896 | " <td>1</td>\n", |
||
| 897 | " </tr>\n", |
||
| 898 | " <tr>\n", |
||
| 899 | " <th rowspan=\"5\" valign=\"top\">Achromobacter</th>\n", |
||
| 900 | " <th>denitrificans</th>\n", |
||
| 901 | " <td>3</td>\n", |
||
| 902 | " </tr>\n", |
||
| 903 | " <tr>\n", |
||
| 904 | " <th>insolitus</th>\n", |
||
| 905 | " <td>4</td>\n", |
||
| 906 | " </tr>\n", |
||
| 907 | " <tr>\n", |
||
| 908 | " <th>sp.</th>\n", |
||
| 909 | " <td>2</td>\n", |
||
| 910 | " </tr>\n", |
||
| 911 | " <tr>\n", |
||
| 912 | " <th>spanius</th>\n", |
||
| 913 | " <td>4</td>\n", |
||
| 914 | " </tr>\n", |
||
| 915 | " <tr>\n", |
||
| 916 | " <th>xylosoxidans</th>\n", |
||
| 917 | " <td>11</td>\n", |
||
| 918 | " </tr>\n", |
||
| 919 | " <tr>\n", |
||
| 920 | " <th rowspan=\"2\" valign=\"top\">Acidaminococcus</th>\n", |
||
| 921 | " <th>fermentans</th>\n", |
||
| 922 | " <td>1</td>\n", |
||
| 923 | " </tr>\n", |
||
| 924 | " <tr>\n", |
||
| 925 | " <th>intestini</th>\n", |
||
| 926 | " <td>1</td>\n", |
||
| 927 | " </tr>\n", |
||
| 928 | " <tr>\n", |
||
| 929 | " <th>Acidiferrobacter</th>\n", |
||
| 930 | " <th>sp.</th>\n", |
||
| 931 | " <td>1</td>\n", |
||
| 932 | " </tr>\n", |
||
| 933 | " <tr>\n", |
||
| 934 | " <th>...</th>\n", |
||
| 935 | " <th>...</th>\n", |
||
| 936 | " <td>...</td>\n", |
||
| 937 | " </tr>\n", |
||
| 938 | " <tr>\n", |
||
| 939 | " <th>Zymobacter</th>\n", |
||
| 940 | " <th>palmae</th>\n", |
||
| 941 | " <td>2</td>\n", |
||
| 942 | " </tr>\n", |
||
| 943 | " <tr>\n", |
||
| 944 | " <th>Zymomonas</th>\n", |
||
| 945 | " <th>mobilis</th>\n", |
||
| 946 | " <td>49</td>\n", |
||
| 947 | " </tr>\n", |
||
| 948 | " <tr>\n", |
||
| 949 | " <th>[Arcobacter]</th>\n", |
||
| 950 | " <th>porcinus</th>\n", |
||
| 951 | " <td>1</td>\n", |
||
| 952 | " </tr>\n", |
||
| 953 | " <tr>\n", |
||
| 954 | " <th>[Bacillus</th>\n", |
||
| 955 | " <th>thuringiensis]</th>\n", |
||
| 956 | " <td>2</td>\n", |
||
| 957 | " </tr>\n", |
||
| 958 | " <tr>\n", |
||
| 959 | " <th rowspan=\"2\" valign=\"top\">[Bacillus]</th>\n", |
||
| 960 | " <th>caldolyticus</th>\n", |
||
| 961 | " <td>2</td>\n", |
||
| 962 | " </tr>\n", |
||
| 963 | " <tr>\n", |
||
| 964 | " <th>selenitireducens</th>\n", |
||
| 965 | " <td>1</td>\n", |
||
| 966 | " </tr>\n", |
||
| 967 | " <tr>\n", |
||
| 968 | " <th rowspan=\"2\" valign=\"top\">[Brevibacterium]</th>\n", |
||
| 969 | " <th>flavum</th>\n", |
||
| 970 | " <td>2</td>\n", |
||
| 971 | " </tr>\n", |
||
| 972 | " <tr>\n", |
||
| 973 | " <th>frigoritolerans</th>\n", |
||
| 974 | " <td>1</td>\n", |
||
| 975 | " </tr>\n", |
||
| 976 | " <tr>\n", |
||
| 977 | " <th rowspan=\"8\" valign=\"top\">[Clostridium]</th>\n", |
||
| 978 | " <th>bolteae</th>\n", |
||
| 979 | " <td>2</td>\n", |
||
| 980 | " </tr>\n", |
||
| 981 | " <tr>\n", |
||
| 982 | " <th>cellulolyticum</th>\n", |
||
| 983 | " <td>1</td>\n", |
||
| 984 | " </tr>\n", |
||
| 985 | " <tr>\n", |
||
| 986 | " <th>cellulosi</th>\n", |
||
| 987 | " <td>1</td>\n", |
||
| 988 | " </tr>\n", |
||
| 989 | " <tr>\n", |
||
| 990 | " <th>clariflavum</th>\n", |
||
| 991 | " <td>1</td>\n", |
||
| 992 | " </tr>\n", |
||
| 993 | " <tr>\n", |
||
| 994 | " <th>propionicum</th>\n", |
||
| 995 | " <td>1</td>\n", |
||
| 996 | " </tr>\n", |
||
| 997 | " <tr>\n", |
||
| 998 | " <th>saccharolyticum</th>\n", |
||
| 999 | " <td>1</td>\n", |
||
| 1000 | " </tr>\n", |
||
| 1001 | " <tr>\n", |
||
| 1002 | " <th>scindens</th>\n", |
||
| 1003 | " <td>1</td>\n", |
||
| 1004 | " </tr>\n", |
||
| 1005 | " <tr>\n", |
||
| 1006 | " <th>stercorarium</th>\n", |
||
| 1007 | " <td>4</td>\n", |
||
| 1008 | " </tr>\n", |
||
| 1009 | " <tr>\n", |
||
| 1010 | " <th>[Enterobacter]</th>\n", |
||
| 1011 | " <th>lignolyticus</th>\n", |
||
| 1012 | " <td>1</td>\n", |
||
| 1013 | " </tr>\n", |
||
| 1014 | " <tr>\n", |
||
| 1015 | " <th rowspan=\"3\" valign=\"top\">[Eubacterium]</th>\n", |
||
| 1016 | " <th>eligens</th>\n", |
||
| 1017 | " <td>3</td>\n", |
||
| 1018 | " </tr>\n", |
||
| 1019 | " <tr>\n", |
||
| 1020 | " <th>hallii</th>\n", |
||
| 1021 | " <td>1</td>\n", |
||
| 1022 | " </tr>\n", |
||
| 1023 | " <tr>\n", |
||
| 1024 | " <th>rectale</th>\n", |
||
| 1025 | " <td>1</td>\n", |
||
| 1026 | " </tr>\n", |
||
| 1027 | " <tr>\n", |
||
| 1028 | " <th rowspan=\"2\" valign=\"top\">[Haemophilus]</th>\n", |
||
| 1029 | " <th>ducreyi</th>\n", |
||
| 1030 | " <td>14</td>\n", |
||
| 1031 | " </tr>\n", |
||
| 1032 | " <tr>\n", |
||
| 1033 | " <th>parasuis</th>\n", |
||
| 1034 | " <td>4</td>\n", |
||
| 1035 | " </tr>\n", |
||
| 1036 | " <tr>\n", |
||
| 1037 | " <th>[Mycobacterium]</th>\n", |
||
| 1038 | " <th>chelonae</th>\n", |
||
| 1039 | " <td>2</td>\n", |
||
| 1040 | " </tr>\n", |
||
| 1041 | " <tr>\n", |
||
| 1042 | " <th>[Pasteurella]</th>\n", |
||
| 1043 | " <th>aerogenes</th>\n", |
||
| 1044 | " <td>1</td>\n", |
||
| 1045 | " </tr>\n", |
||
| 1046 | " <tr>\n", |
||
| 1047 | " <th>[Polyangium]</th>\n", |
||
| 1048 | " <th>brachysporum</th>\n", |
||
| 1049 | " <td>1</td>\n", |
||
| 1050 | " </tr>\n", |
||
| 1051 | " <tr>\n", |
||
| 1052 | " <th>[Pseudomonas</th>\n", |
||
| 1053 | " <th>syringae]</th>\n", |
||
| 1054 | " <td>3</td>\n", |
||
| 1055 | " </tr>\n", |
||
| 1056 | " <tr>\n", |
||
| 1057 | " <th>[Pseudomonas]</th>\n", |
||
| 1058 | " <th>mesoacidophila</th>\n", |
||
| 1059 | " <td>4</td>\n", |
||
| 1060 | " </tr>\n", |
||
| 1061 | " <tr>\n", |
||
| 1062 | " <th>complete</th>\n", |
||
| 1063 | " <th>chromosome</th>\n", |
||
| 1064 | " <td>2</td>\n", |
||
| 1065 | " </tr>\n", |
||
| 1066 | " <tr>\n", |
||
| 1067 | " <th>gamma</th>\n", |
||
| 1068 | " <th>proteobacterium</th>\n", |
||
| 1069 | " <td>1</td>\n", |
||
| 1070 | " </tr>\n", |
||
| 1071 | " <tr>\n", |
||
| 1072 | " <th>secondary</th>\n", |
||
| 1073 | " <th>endosymbiont</th>\n", |
||
| 1074 | " <td>1</td>\n", |
||
| 1075 | " </tr>\n", |
||
| 1076 | " </tbody>\n", |
||
| 1077 | "</table>\n", |
||
| 1078 | "<p>3186 rows × 1 columns</p>\n", |
||
| 1079 | "</div>" |
||
| 1080 | ], |
||
| 1081 | "text/plain": [ |
||
| 1082 | " count\n", |
||
| 1083 | "genus species \n", |
||
| 1084 | "'Catharanthus roseus' 2\n", |
||
| 1085 | "'Deinococcus soli' 1\n", |
||
| 1086 | "'Nostoc azollae' 3\n", |
||
| 1087 | "18,711,729 reads 1\n", |
||
| 1088 | "Acaryochloris marina 10\n", |
||
| 1089 | "Acetobacter aceti 1\n", |
||
| 1090 | " ascendens 1\n", |
||
| 1091 | " orientalis 2\n", |
||
| 1092 | " oryzifermentans 1\n", |
||
| 1093 | " pasteurianus 91\n", |
||
| 1094 | " persici 2\n", |
||
| 1095 | " pomorum 7\n", |
||
| 1096 | " senegalensis 2\n", |
||
| 1097 | " sp. 7\n", |
||
| 1098 | " tropicalis 2\n", |
||
| 1099 | "Acetobacterium woodii 1\n", |
||
| 1100 | "Acetohalobium arabaticum 1\n", |
||
| 1101 | "Acetomicrobium mobile 1\n", |
||
| 1102 | "Acholeplasma axanthum 1\n", |
||
| 1103 | " hippikon 2\n", |
||
| 1104 | " laidlawii 2\n", |
||
| 1105 | " oculi 1\n", |
||
| 1106 | "Achromobacter denitrificans 3\n", |
||
| 1107 | " insolitus 4\n", |
||
| 1108 | " sp. 2\n", |
||
| 1109 | " spanius 4\n", |
||
| 1110 | " xylosoxidans 11\n", |
||
| 1111 | "Acidaminococcus fermentans 1\n", |
||
| 1112 | " intestini 1\n", |
||
| 1113 | "Acidiferrobacter sp. 1\n", |
||
| 1114 | "... ...\n", |
||
| 1115 | "Zymobacter palmae 2\n", |
||
| 1116 | "Zymomonas mobilis 49\n", |
||
| 1117 | "[Arcobacter] porcinus 1\n", |
||
| 1118 | "[Bacillus thuringiensis] 2\n", |
||
| 1119 | "[Bacillus] caldolyticus 2\n", |
||
| 1120 | " selenitireducens 1\n", |
||
| 1121 | "[Brevibacterium] flavum 2\n", |
||
| 1122 | " frigoritolerans 1\n", |
||
| 1123 | "[Clostridium] bolteae 2\n", |
||
| 1124 | " cellulolyticum 1\n", |
||
| 1125 | " cellulosi 1\n", |
||
| 1126 | " clariflavum 1\n", |
||
| 1127 | " propionicum 1\n", |
||
| 1128 | " saccharolyticum 1\n", |
||
| 1129 | " scindens 1\n", |
||
| 1130 | " stercorarium 4\n", |
||
| 1131 | "[Enterobacter] lignolyticus 1\n", |
||
| 1132 | "[Eubacterium] eligens 3\n", |
||
| 1133 | " hallii 1\n", |
||
| 1134 | " rectale 1\n", |
||
| 1135 | "[Haemophilus] ducreyi 14\n", |
||
| 1136 | " parasuis 4\n", |
||
| 1137 | "[Mycobacterium] chelonae 2\n", |
||
| 1138 | "[Pasteurella] aerogenes 1\n", |
||
| 1139 | "[Polyangium] brachysporum 1\n", |
||
| 1140 | "[Pseudomonas syringae] 3\n", |
||
| 1141 | "[Pseudomonas] mesoacidophila 4\n", |
||
| 1142 | "complete chromosome 2\n", |
||
| 1143 | "gamma proteobacterium 1\n", |
||
| 1144 | "secondary endosymbiont 1\n", |
||
| 1145 | "\n", |
||
| 1146 | "[3186 rows x 1 columns]" |
||
| 1147 | ] |
||
| 1148 | }, |
||
| 1149 | "execution_count": 24, |
||
| 1150 | "metadata": {}, |
||
| 1151 | "output_type": "execute_result" |
||
| 1152 | } |
||
| 1153 | ], |
||
| 1154 | "source": [ |
||
| 1155 | ".groupby([\"genus\", \"species\"]).agg({\"species\": \"count\"})\n", |
||
| 1156 | "inventory.columns=[\"count\"]\n", |
||
| 1157 | "inventory" |
||
| 1158 | ] |
||
| 1159 | }, |
||
| 1160 | { |
||
| 1161 | "cell_type": "code", |
||
| 1162 | "execution_count": 25, |
||
| 1163 | "metadata": {}, |
||
| 1164 | "outputs": [ |
||
| 1165 | { |
||
| 1166 | "data": { |
||
| 1167 | "text/plain": [ |
||
| 1168 | "['NZ_CP013305.1 Vibrio cholerae strain CRC1106 chromosome 1, complete sequence',\n", |
||
| 1169 | " 'NZ_CP013306.1 Vibrio cholerae strain CRC1106 chromosome 2, complete sequence',\n", |
||
| 1170 | " 'NC_013791.2 Bacillus pseudofirmus OF4, complete genome',\n", |
||
| 1171 | " 'NC_013792.1 Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence',\n", |
||
| 1172 | " 'NC_013793.1 Bacillus pseudofirmus OF4 plasmid pBpOF4-02, complete sequence',\n", |
||
| 1173 | " 'NC_000913.3 Escherichia coli str. K-12 substr. MG1655, complete genome',\n", |
||
| 1174 | " 'NC_007164.1 Corynebacterium jeikeium K411 complete genome',\n", |
||
| 1175 | " 'NC_003080.1 Corynebacterium jeikeium K411 plasmid pKW4, complete sequence',\n", |
||
| 1176 | " 'NC_002162.1 Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome',\n", |
||
| 1177 | " 'NC_004088.1 Yersinia pestis KIM10+, complete genome',\n", |
||
| 1178 | " 'NC_004838.1 Yersinia pestis KIM10+ plasmid pMT-1, complete sequence',\n", |
||
| 1179 | " 'NC_002620.2 Chlamydia muridarum Nigg, complete genome',\n", |
||
| 1180 | " 'NC_002182.1 Chlamydia muridarum Nigg plasmid pMoPn, complete sequence',\n", |
||
| 1181 | " 'NC_002488.3 Xylella fastidiosa 9a5c, complete genome',\n", |
||
| 1182 | " 'NC_002489.3 Xylella fastidiosa 9a5c plasmid pXF1.3, complete sequence',\n", |
||
| 1183 | " 'NC_002490.1 Xylella fastidiosa 9a5c plasmid pXF51, complete sequence',\n", |
||
| 1184 | " 'NC_002505.1 Vibrio cholerae O1 biovar El Tor str. N16961 chromosome I, complete sequence',\n", |
||
| 1185 | " 'NC_002506.1 Vibrio cholerae O1 biovar El Tor str. N16961 chromosome II, complete sequence',\n", |
||
| 1186 | " 'NC_002516.2 Pseudomonas aeruginosa PAO1, complete genome',\n", |
||
| 1187 | " 'NC_002737.2 Streptococcus pyogenes M1 GAS, complete genome',\n", |
||
| 1188 | " 'NC_002663.1 Pasteurella multocida subsp. multocida str. Pm70, complete genome',\n", |
||
| 1189 | " 'NC_002946.2 Neisseria gonorrhoeae FA 1090 chromosome, complete genome',\n", |
||
| 1190 | " 'NC_002662.1 Lactococcus lactis subsp. lactis Il1403 chromosome, complete genome',\n", |
||
| 1191 | " 'NC_003028.3 Streptococcus pneumoniae TIGR4, complete genome',\n", |
||
| 1192 | " 'NC_002696.2 Caulobacter crescentus CB15 chromosome, complete genome',\n", |
||
| 1193 | " 'NC_004337.2 Shigella flexneri 2a str. 301 chromosome, complete genome',\n", |
||
| 1194 | " 'NC_004851.1 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence',\n", |
||
| 1195 | " 'NC_013174.1 Jonesia denitrificans DSM 20603, complete genome',\n", |
||
| 1196 | " 'NC_013166.1 Kangiella koreensis DSM 16069, complete genome',\n", |
||
| 1197 | " 'NC_013171.1 Anaerococcus prevotii DSM 20548, complete genome',\n", |
||
| 1198 | " 'NC_013164.1 Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence',\n", |
||
| 1199 | " 'NC_013222.1 Robiginitalea biformata HTCC2501, complete genome',\n", |
||
| 1200 | " 'NC_017285.1 Chlamydophila pneumoniae LPCoLN, complete genome',\n", |
||
| 1201 | " 'NC_017286.1 Chlamydophila pneumoniae LPCoLN plasmid, complete sequence',\n", |
||
| 1202 | " 'NC_013194.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete genome',\n", |
||
| 1203 | " 'NC_013193.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence',\n", |
||
| 1204 | " 'NC_013190.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph02, complete sequence',\n", |
||
| 1205 | " 'NC_013191.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph03, complete sequence',\n", |
||
| 1206 | " 'NC_013216.1 Desulfotomaculum acetoxidans DSM 771, complete genome',\n", |
||
| 1207 | " 'NC_013203.1 Atopobium parvulum DSM 20469, complete genome',\n", |
||
| 1208 | " 'NC_013355.1 Zymomonas mobilis subsp. mobilis NCIMB 11163, complete genome',\n", |
||
| 1209 | " 'NC_013356.1 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001, complete sequence',\n", |
||
| 1210 | " 'NC_013357.1 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence',\n", |
||
| 1211 | " 'NC_013358.1 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1003, complete sequence',\n", |
||
| 1212 | " 'NC_013204.1 Eggerthella lenta DSM 2243, complete genome',\n", |
||
| 1213 | " 'NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete genome',\n", |
||
| 1214 | " 'NC_013206.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI01, complete sequence',\n", |
||
| 1215 | " 'NC_013207.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02, complete sequence',\n", |
||
| 1216 | " 'NC_013208.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03, complete sequence',\n", |
||
| 1217 | " 'NC_013223.1 Desulfohalobium retbaense DSM 5692, complete genome',\n", |
||
| 1218 | " 'NC_013224.1 Desulfohalobium retbaense DSM 5692 plasmid pDRET01, complete sequence',\n", |
||
| 1219 | " 'NC_009883.1 Rickettsia bellii OSU 85-389, complete genome',\n", |
||
| 1220 | " 'NC_009953.1 Salinispora arenicola CNS-205, complete genome',\n", |
||
| 1221 | " 'NC_009901.1 Shewanella pealeana ATCC 700345, complete genome',\n", |
||
| 1222 | " 'NC_009922.1 Alkaliphilus oremlandii OhILAs, complete genome',\n", |
||
| 1223 | " 'NC_010612.1 Mycobacterium marinum M, complete genome',\n", |
||
| 1224 | " 'NC_010604.1 Mycobacterium marinum M plasmid pMM23, complete sequence',\n", |
||
| 1225 | " 'NC_012125.1 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594, complete genome',\n", |
||
| 1226 | " 'NC_012124.1 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 plasmid pSPCV, complete sequence',\n", |
||
| 1227 | " 'NC_009943.1 Desulfococcus oleovorans Hxd3, complete genome',\n", |
||
| 1228 | " 'NC_010424.1 Candidatus Desulforudis audaxviator MP104C, complete genome',\n", |
||
| 1229 | " 'NC_010611.1 Acinetobacter baumannii ACICU, complete genome',\n", |
||
| 1230 | " 'NC_010605.1 Acinetobacter baumannii ACICU plasmid pACICU1, complete sequence',\n", |
||
| 1231 | " 'NC_010606.1 Acinetobacter baumannii ACICU plasmid pACICU2, complete sequence',\n", |
||
| 1232 | " 'NC_010084.1 Burkholderia multivorans ATCC 17616 chromosome 1, complete sequence',\n", |
||
| 1233 | " 'NC_010086.1 Burkholderia multivorans ATCC 17616 chromosome 2, complete sequence',\n", |
||
| 1234 | " 'NC_010087.1 Burkholderia multivorans ATCC 17616 chromosome 3, complete sequence',\n", |
||
| 1235 | " 'NC_010070.1 Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence',\n", |
||
| 1236 | " 'NC_010103.1 Brucella canis ATCC 23365 chromosome I, complete sequence',\n", |
||
| 1237 | " 'NC_010104.1 Brucella canis ATCC 23365 chromosome II, complete sequence',\n", |
||
| 1238 | " 'NC_012587.1 Sinorhizobium fredii NGR234 chromosome, complete genome',\n", |
||
| 1239 | " 'NC_000914.2 Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence',\n", |
||
| 1240 | " 'NC_012586.1 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence',\n", |
||
| 1241 | " 'NC_010003.1 Petrotoga mobilis SJ95, complete genome',\n", |
||
| 1242 | " 'NC_010067.1 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete genome',\n", |
||
| 1243 | " 'NC_010002.1 Delftia acidovorans SPH-1, complete genome',\n", |
||
| 1244 | " 'NC_010001.1 Lachnoclostridium phytofermentans ISDg, complete genome',\n", |
||
| 1245 | " 'NC_010102.1 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, complete genome',\n", |
||
| 1246 | " 'NC_010742.1 Brucella abortus S19 chromosome 1, complete sequence',\n", |
||
| 1247 | " 'NC_010740.1 Brucella abortus S19 chromosome 2, complete sequence',\n", |
||
| 1248 | " 'NC_010117.1 Coxiella burnetii RSA 331, complete genome',\n", |
||
| 1249 | " 'NC_010115.1 Coxiella burnetii RSA 331 plasmid QpH1, complete sequence',\n", |
||
| 1250 | " 'NC_009997.1 Shewanella baltica OS195, complete genome',\n", |
||
| 1251 | " 'NC_009998.1 Shewanella baltica OS195 plasmid pS19501, complete sequence',\n", |
||
| 1252 | " 'NC_009999.1 Shewanella baltica OS195 plasmid pS19502, complete sequence',\n", |
||
| 1253 | " 'NC_010000.1 Shewanella baltica OS195 plasmid pS19503, complete sequence',\n", |
||
| 1254 | " 'NC_010163.1 Acholeplasma laidlawii PG-8A, complete genome',\n", |
||
| 1255 | " 'NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, complete genome',\n", |
||
| 1256 | " 'NC_003277.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid pSLT, complete sequence',\n", |
||
| 1257 | " 'NC_004631.1 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome',\n", |
||
| 1258 | " 'NC_002944.2 Mycobacterium avium subsp. paratuberculosis str. k10, complete genome',\n", |
||
| 1259 | " 'NC_007332.1 Mycoplasma hyopneumoniae 7448, complete genome',\n", |
||
| 1260 | " 'NC_005957.1 [Bacillus thuringiensis] serovar konkukian str. 97-27 chromosome, complete genome',\n", |
||
| 1261 | " 'NC_006578.1 [Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence',\n", |
||
| 1262 | " 'NC_010816.1 Bifidobacterium longum DJO10A, complete genome',\n", |
||
| 1263 | " 'NC_004252.1 Bifidobacterium longum DJO10A plasmid pDOJH10L, complete sequence',\n", |
||
| 1264 | " 'NC_004253.1 Bifidobacterium longum DJO10A plasmid pDOJH10S, complete sequence',\n", |
||
| 1265 | " 'NC_008800.1 Yersinia enterocolitica subsp. enterocolitica 8081 chromosome, complete genome',\n", |
||
| 1266 | " 'NC_008791.1 Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081, complete sequence',\n", |
||
| 1267 | " 'NC_003272.1 Nostoc sp. PCC 7120 DNA, complete genome',\n", |
||
| 1268 | " 'NC_003276.1 Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome',\n", |
||
| 1269 | " 'NC_003240.1 Nostoc sp. PCC 7120 plasmid pCC7120beta DNA, complete sequence',\n", |
||
| 1270 | " 'NC_003273.1 Nostoc sp. PCC 7120 plasmid pCC7120delta DNA, complete sequence',\n", |
||
| 1271 | " 'NC_003270.1 Nostoc sp. PCC 7120 plasmid pCC7120epsilon DNA, complete sequence',\n", |
||
| 1272 | " 'NC_003267.1 Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence',\n", |
||
| 1273 | " 'NC_003241.1 Nostoc sp. PCC 7120 plasmid pCC7120zeta DNA, complete sequence',\n", |
||
| 1274 | " 'NC_009342.1 Corynebacterium glutamicum R DNA, complete genome',\n", |
||
| 1275 | " 'NC_009343.1 Corynebacterium glutamicum R plasmid pCGR1 DNA, complete sequence',\n", |
||
| 1276 | " 'NC_010729.1 Porphyromonas gingivalis ATCC 33277 DNA, complete genome',\n", |
||
| 1277 | " 'NC_013799.1 Hydrogenobacter thermophilus TK-6 DNA, complete genome',\n", |
||
| 1278 | " 'NC_003450.3 Corynebacterium glutamicum ATCC 13032 chromosome, complete genome',\n", |
||
| 1279 | " 'NC_017382.1 Helicobacter pylori 51, complete genome',\n", |
||
| 1280 | " 'NC_008322.1 Shewanella sp. MR-7, complete genome',\n", |
||
| 1281 | " 'NC_008320.1 Shewanella sp. MR-7, complete sequence',\n", |
||
| 1282 | " 'NC_008321.1 Shewanella sp. MR-4, complete genome',\n", |
||
| 1283 | " 'NC_008345.1 Shewanella frigidimarina NCIMB 400, complete genome',\n", |
||
| 1284 | " 'NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete genome',\n", |
||
| 1285 | " 'NC_008347.1 Maricaulis maris MCS10, complete genome',\n", |
||
| 1286 | " 'NC_008344.1 Nitrosomonas eutropha C91, complete genome',\n", |
||
| 1287 | " 'NC_008341.1 Nitrosomonas eutropha C91 Plasmid1, complete sequence',\n", |
||
| 1288 | " 'NC_008342.1 Nitrosomonas eutropha C91 Plasmid2, complete sequence',\n", |
||
| 1289 | " 'NC_008340.1 Alkalilimnicola ehrlichii MLHE-1, complete genome',\n", |
||
| 1290 | " 'NC_008570.1 Aeromonas hydrophila subsp. hydrophila ATCC 7966 chromosome, complete genome',\n", |
||
| 1291 | " 'NC_008435.1 Rhodopseudomonas palustris BisA53, complete genome',\n", |
||
| 1292 | " 'NC_008563.1 Escherichia coli APEC O1, complete genome',\n", |
||
| 1293 | " 'NC_009837.1 Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence',\n", |
||
| 1294 | " 'NC_009838.1 Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence',\n", |
||
| 1295 | " 'NC_008576.1 Magnetococcus marinus MC-1, complete genome',\n", |
||
| 1296 | " 'NC_011566.1 Shewanella piezotolerans WP3, complete genome',\n", |
||
| 1297 | " 'NC_008536.1 Candidatus Solibacter usitatus Ellin6076, complete genome',\n", |
||
| 1298 | " 'NC_008711.1 Paenarthrobacter aurescens TC1, complete genome',\n", |
||
| 1299 | " 'NC_008712.1 Paenarthrobacter aurescens TC1 plasmid TC1, complete sequence',\n", |
||
| 1300 | " 'NC_008713.1 Paenarthrobacter aurescens TC1 plasmid TC2, complete sequence',\n", |
||
| 1301 | " 'NC_008554.1 Syntrophobacter fumaroxidans MPOB, complete genome',\n", |
||
| 1302 | " 'NC_008595.1 Mycobacterium avium 104, complete genome',\n", |
||
| 1303 | " 'NC_008596.1 Mycobacterium smegmatis str. MC2 155 chromosome, complete genome',\n", |
||
| 1304 | " 'NC_008578.1 Acidothermus cellulolyticus 11B, complete genome',\n", |
||
| 1305 | " 'NC_008609.1 Pelobacter propionicus DSM 2379, complete genome',\n", |
||
| 1306 | " 'NC_008607.1 Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence',\n", |
||
| 1307 | " 'NC_008608.1 Pelobacter propionicus DSM 2379 plasmid pPRO2, complete sequence',\n", |
||
| 1308 | " 'NC_008600.1 Bacillus thuringiensis str. Al Hakam, complete genome',\n", |
||
| 1309 | " 'NC_008598.1 Bacillus thuringiensis str. Al Hakam, plasmid pALH1, complete sequence',\n", |
||
| 1310 | " 'NC_013928.1 Streptococcus mutans NN2025 DNA, complete genome',\n", |
||
| 1311 | " 'NC_014215.1 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome',\n", |
||
| 1312 | " 'NC_013861.1 Legionella longbeachae NSW150, complete genome',\n", |
||
| 1313 | " 'NC_014544.1 Legionella longbeachae NSW150 plasmid pLLO',\n", |
||
| 1314 | " 'NC_012925.1 Streptococcus suis P1/7 complete genome',\n", |
||
| 1315 | " 'NC_013949.1 Helicobacter mustelae 12198 complete genome',\n", |
||
| 1316 | " 'NC_003062.2 Agrobacterium fabrum str. C58 chromosome circular, complete sequence',\n", |
||
| 1317 | " 'NC_003063.2 Agrobacterium fabrum str. C58 chromosome linear, complete sequence',\n", |
||
| 1318 | " 'NC_003064.2 Agrobacterium fabrum str. C58 plasmid At, complete sequence',\n", |
||
| 1319 | " 'NC_003065.3 Agrobacterium fabrum str. C58 plasmid Ti, complete sequence',\n", |
||
| 1320 | " 'NC_007761.1 Rhizobium etli CFN 42, complete genome',\n", |
||
| 1321 | " 'NC_007762.1 Rhizobium etli CFN 42 plasmid p42a, complete sequence',\n", |
||
| 1322 | " 'NC_007763.1 Rhizobium etli CFN 42 plasmid p42b, complete sequence',\n", |
||
| 1323 | " 'NC_007764.1 Rhizobium etli CFN 42 plasmid p42c, complete sequence',\n", |
||
| 1324 | " 'NC_007765.1 Rhizobium etli CFN 42 plasmid p42e, complete sequence',\n", |
||
| 1325 | " 'NC_007766.1 Rhizobium etli CFN 42 plasmid p42f, complete sequence',\n", |
||
| 1326 | " 'NC_004041.2 Rhizobium etli CFN 42 plasmid symbiotic plasmid p42d, complete sequence',\n", |
||
| 1327 | " 'NC_014148.1 Planctopirus limnophila DSM 3776, complete genome',\n", |
||
| 1328 | " 'NC_014149.1 Planctopirus limnophila DSM 3776 plasmid pPLIM01, complete sequence',\n", |
||
| 1329 | " 'NC_014212.1 Meiothermus silvanus DSM 9946, complete genome',\n", |
||
| 1330 | " 'NC_014213.1 Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence',\n", |
||
| 1331 | " 'NC_014214.1 Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence',\n", |
||
| 1332 | " 'NC_014171.1 Bacillus thuringiensis BMB171, complete genome',\n", |
||
| 1333 | " 'NC_014172.1 Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence',\n", |
||
| 1334 | " 'NC_014216.1 Desulfurivibrio alkaliphilus AHT2, complete genome',\n", |
||
| 1335 | " 'NC_014158.1 Tsukamurella paurometabola DSM 20162, complete genome',\n", |
||
| 1336 | " 'NC_014159.1 Tsukamurella paurometabola DSM 20162 plasmid pTpau01, complete sequence',\n", |
||
| 1337 | " 'NC_014166.1 Arcobacter nitrofigilis DSM 7299, complete genome',\n", |
||
| 1338 | " 'NC_014147.1 Moraxella catarrhalis BBH18, complete genome',\n", |
||
| 1339 | " 'NC_014100.1 Caulobacter segnis ATCC 21756, complete genome',\n", |
||
| 1340 | " 'NC_014169.1 Bifidobacterium longum subsp. longum JDM301, complete genome',\n", |
||
| 1341 | " 'NC_017297.1 Clostridium botulinum F str. 230613, complete genome',\n", |
||
| 1342 | " 'NC_017298.1 Clostridium botulinum F str. 230613 plasmid pCBF, complete sequence',\n", |
||
| 1343 | " 'NC_014218.1 Arcanobacterium haemolyticum DSM 20595, complete genome',\n", |
||
| 1344 | " 'NC_016582.1 Streptomyces bingchenggensis BCW-1, complete genome',\n", |
||
| 1345 | " 'NC_014220.1 Syntrophothermus lipocalidus DSM 12680, complete genome',\n", |
||
| 1346 | " 'NC_017633.1 Escherichia coli ETEC H10407, complete genome',\n", |
||
| 1347 | " 'NC_017721.1 Escherichia coli ETEC H10407 p52 plasmid',\n", |
||
| 1348 | " 'NC_017723.1 Escherichia coli ETEC H10407 p58 plasmid',\n", |
||
| 1349 | " 'NC_017722.1 Escherichia coli ETEC H10407 p666 plasmid',\n", |
||
| 1350 | " 'NC_017724.1 Escherichia coli ETEC H10407 p948 plasmid',\n", |
||
| 1351 | " 'NC_017441.1 Chlamydia trachomatis Sweden2, complete genome',\n", |
||
| 1352 | " 'NC_017465.1 Lactobacillus fermentum CECT 5716, complete genome',\n", |
||
| 1353 | " 'NC_018588.1 Listeria monocytogenes strain SLCC2372, serotype 1/2c',\n", |
||
| 1354 | " 'NC_018889.1 Listeria monocytogenes serotype 1-2c str. SLCC2372 plasmid pLM1-2cUG1 complete sequence',\n", |
||
| 1355 | " 'NC_016776.1 Bacteroides fragilis 638R genome',\n", |
||
| 1356 | " 'NC_016810.1 Salmonella enterica subsp. enterica serovar Typhimurium SL1344 complete genome',\n", |
||
| 1357 | " 'NC_017718.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pCol1B9_SL1344 complete sequence',\n", |
||
| 1358 | " 'NC_017719.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pRSF1010_SL1344 complete sequence',\n", |
||
| 1359 | " 'NC_017720.1 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pSLT_SL1344 complete sequence',\n", |
||
| 1360 | " 'NC_016809.1 Haemophilus influenzae 10810 genome',\n", |
||
| 1361 | " 'NC_015964.1 Haemophilus parainfluenzae T3T1 complete genome',\n", |
||
| 1362 | " 'NC_016620.1 Bacteriovorax marinus SJ genome',\n", |
||
| 1363 | " 'NC_019100.1 Bacteriovorax marinus SJ plasmid pBMS1 complete sequence',\n", |
||
| 1364 | " 'NC_017593.1 Streptococcus pneumoniae INV200 genome',\n", |
||
| 1365 | " 'NC_017592.1 Streptococcus pneumoniae OXC141 complete genome',\n", |
||
| 1366 | " 'NC_017591.1 Streptococcus pneumoniae INV104 genome',\n", |
||
| 1367 | " 'NC_021006.1 Streptococcus pneumoniae SPN034156 draft genome',\n", |
||
| 1368 | " 'NC_021028.1 Streptococcus pneumoniae SPN034183 draft genome',\n", |
||
| 1369 | " 'NC_021026.1 Streptococcus pneumoniae SPN994038 draft genome',\n", |
||
| 1370 | " 'NC_021005.1 Streptococcus pneumoniae SPN994039 draft genome',\n", |
||
| 1371 | " 'NC_021003.1 Streptococcus pneumoniae SPN032672 draft genome',\n", |
||
| 1372 | " 'NC_021004.1 Streptococcus pneumoniae SPN033038 draft genome',\n", |
||
| 1373 | " 'NC_017519.1 Mycoplasma hyorhinis MCLD, complete genome',\n", |
||
| 1374 | " 'NC_015428.1 Lactobacillus buchneri NRRL B-30929, complete genome',\n", |
||
| 1375 | " 'NC_015420.1 Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete sequence',\n", |
||
| 1376 | " 'NC_015429.1 Lactobacillus buchneri NRRL B-30929 plasmid pLBUC02, complete sequence',\n", |
||
| 1377 | " 'NC_015421.1 Lactobacillus buchneri NRRL B-30929 plasmid pLBUC03, complete sequence',\n", |
||
| 1378 | " 'NC_023030.2 Mycoplasma gallisepticum S6, complete genome',\n", |
||
| 1379 | " 'NC_015638.1 Lacinutrix sp. 5H-3-7-4, complete genome',\n", |
||
| 1380 | " 'NC_015497.1 Glaciecola sp. 4H-3-7+YE-5, complete genome',\n", |
||
| 1381 | " 'NC_015498.1 Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence',\n", |
||
| 1382 | " 'NC_015496.1 Dokdonia sp. 4H-3-7-5, complete genome',\n", |
||
| 1383 | " 'NC_015501.1 Porphyromonas asaccharolytica DSM 20707, complete genome',\n", |
||
| 1384 | " 'NC_018080.1 Pseudomonas aeruginosa DK2, complete genome',\n", |
||
| 1385 | " 'NC_018081.1 Enterococcus hirae ATCC 9790, complete genome',\n", |
||
| 1386 | " 'NC_015845.1 Enterococcus hirae ATCC 9790 plasmid pTG9790, complete sequence',\n", |
||
| 1387 | " 'NZ_CP010978.1 Pelosinus fermentans JBW45, complete genome',\n", |
||
| 1388 | " 'NC_018089.1 Streptococcus mutans GS-5, complete genome',\n", |
||
| 1389 | " 'NZ_CP015923.1 Salmonella enterica subsp. enterica serovar Newport str. Levine 1, complete genome',\n", |
||
| 1390 | " 'NZ_CP015924.1 Salmonella enterica subsp. enterica serovar Newport str. Levine 15, complete genome',\n", |
||
| 1391 | " 'NZ_CP015876.1 Pseudomonas putida SJTE-1, complete genome',\n", |
||
| 1392 | " 'NZ_CP015877.1 Pseudomonas aeruginosa SJTD-1, complete genome',\n", |
||
| 1393 | " 'NZ_CP010283.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21550, complete genome',\n", |
||
| 1394 | " 'NZ_CP009564.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21550 plasmid pCVM21550, complete sequence',\n", |
||
| 1395 | " 'NZ_CP010281.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22513, complete genome',\n", |
||
| 1396 | " 'NZ_CP009562.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22513 plasmid pCVM22513, complete sequence',\n", |
||
| 1397 | " 'NZ_CP010282.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21538, complete genome',\n", |
||
| 1398 | " 'NZ_CP009563.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21538 plasmid pCVM21538, complete sequence',\n", |
||
| 1399 | " 'NZ_CP010279.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22425, complete genome',\n", |
||
| 1400 | " 'NZ_CP009560.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22425 plasmid pCVM22425, complete sequence',\n", |
||
| 1401 | " 'NZ_CP009561.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N18486, complete genome',\n", |
||
| 1402 | " 'NZ_CP010284.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543, complete genome',\n", |
||
| 1403 | " 'NZ_CP009570.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 plasmid pCVMN1543, complete sequence',\n", |
||
| 1404 | " 'NZ_CP010280.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462, complete genome',\n", |
||
| 1405 | " 'NZ_CP009567.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCFSAN000934_02, complete sequence',\n", |
||
| 1406 | " 'NZ_CP009568.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCFSAN000934_03, complete sequence',\n", |
||
| 1407 | " 'NZ_CP009566.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCVM22462, complete sequence',\n", |
||
| 1408 | " 'NC_018108.1 Taylorella equigenitalis ATCC 35865, complete genome',\n", |
||
| 1409 | " 'NC_018106.1 Klebsiella michiganensis E718, complete sequence',\n", |
||
| 1410 | " 'NC_021501.1 Klebsiella michiganensis strain E718 plasmid pKOX_NDM1, complete sequence',\n", |
||
| 1411 | " 'NC_018107.1 Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence',\n", |
||
| 1412 | " 'NC_016948.1 Mycobacterium intracellulare MOTT-64, complete genome',\n", |
||
| 1413 | " 'NC_016946.1 Mycobacterium intracellulare ATCC 13950, complete genome',\n", |
||
| 1414 | " 'NC_016947.1 Mycobacterium intracellulare MOTT-02, complete genome',\n", |
||
| 1415 | " 'NC_017049.1 Rickettsia prowazekii str. Chernikova, complete genome',\n", |
||
| 1416 | " 'NZ_CP007066.1 Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence',\n", |
||
| 1417 | " 'NZ_CP007064.1 Fusobacterium nucleatum subsp. vincentii 3_1_27 chromosome 1, complete sequence',\n", |
||
| 1418 | " 'NZ_CP007065.1 Fusobacterium nucleatum subsp. vincentii 3_1_27 chromosome 2, complete sequence',\n", |
||
| 1419 | " 'NZ_CP008742.1 Pseudomonas savastanoi pv. savastanoi NCPPB 3335, complete genome',\n", |
||
| 1420 | " 'NC_015678.1 Streptococcus parasanguinis ATCC 15912, complete genome',\n", |
||
| 1421 | " 'NC_014643.1 Rothia dentocariosa ATCC 17931, complete genome',\n", |
||
| 1422 | " 'NC_014618.1 Enterobacter lignolyticus SCF1, complete genome',\n", |
||
| 1423 | " 'NC_014625.1 Ketogulonicigenium vulgare Y25, complete genome',\n", |
||
| 1424 | " 'NC_014621.1 Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence',\n", |
||
| 1425 | " 'NC_014626.1 Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence',\n", |
||
| 1426 | " 'NC_017161.1 Hydrogenobacter thermophilus TK-6, complete genome',\n", |
||
| 1427 | " 'NC_014616.1 Bifidobacterium bifidum S17, complete genome',\n", |
||
| 1428 | " 'NC_014622.2 Paenibacillus polymyxa SC2, complete genome',\n", |
||
| 1429 | " 'NC_014628.2 Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence',\n", |
||
| 1430 | " 'NC_017455.1 Halanaerobium praevalens DSM 2228, complete genome',\n", |
||
| 1431 | " 'NC_014623.1 Stigmatella aurantiaca DW4/3-1, complete genome',\n", |
||
| 1432 | " 'NC_014632.1 Ilyobacter polytropus DSM 2926, complete genome',\n", |
||
| 1433 | " 'NC_014633.1 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence',\n", |
||
| 1434 | " 'NC_014634.1 Ilyobacter polytropus DSM 2926 plasmid pILYOP02, complete sequence',\n", |
||
| 1435 | " 'NC_017451.1 Haemophilus influenzae R2866, complete genome',\n", |
||
| 1436 | " 'NC_017452.1 Haemophilus influenzae R2846, complete genome',\n", |
||
| 1437 | " 'NC_015174.1 Rubinisphaera brasiliensis DSM 5305, complete genome',\n", |
||
| 1438 | " 'NC_015214.1 Lactobacillus amylovorus strain 30SC, complete genome',\n", |
||
| 1439 | " 'NC_015213.1 Lactobacillus amylovorus strain 30SC plasmid pRKC30SC1, complete sequence',\n", |
||
| 1440 | " 'NC_015218.1 Lactobacillus amylovorus strain 30SC plasmid pRKC30SC2, complete sequence',\n", |
||
| 1441 | " 'NC_017569.1 Riemerella anatipestifer RA-GD, complete genome',\n", |
||
| 1442 | " 'NC_017295.1 Clostridium acetobutylicum EA 2018, complete genome',\n", |
||
| 1443 | " 'NC_017296.1 Clostridium acetobutylicum EA 2018 EA2018plasmid, complete sequence',\n", |
||
| 1444 | " 'NC_015470.1 Chlamydia psittaci 6BC, complete genome',\n", |
||
| 1445 | " 'NC_015217.1 Chlamydia psittaci 6BC plasmid p6BC, complete sequence',\n", |
||
| 1446 | " 'NZ_CP019725.1 Xanthomonas perforans 91-118 chromosome, complete genome',\n", |
||
| 1447 | " 'NC_015224.1 Yersinia enterocolitica subsp. palearctica 105.5R(r), complete genome',\n", |
||
| 1448 | " 'NC_015475.1 Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence',\n", |
||
| 1449 | " 'NC_017374.1 Helicobacter pylori 2017, complete genome',\n", |
||
| 1450 | " 'NC_017381.1 Helicobacter pylori 2018, complete genome',\n", |
||
| 1451 | " 'NZ_CP017125.1 Mycoplasma capricolum subsp. capripneumoniae M1601 chromosome, complete genome',\n", |
||
| 1452 | " 'NC_015508.1 Agrobacterium sp. H13-3 linear chromosome, complete sequence',\n", |
||
| 1453 | " 'NC_015183.1 Agrobacterium sp. H13-3 circular chromosome, complete sequence',\n", |
||
| 1454 | " 'NC_015184.1 Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence',\n", |
||
| 1455 | " 'NC_017486.1 Lactococcus lactis subsp. lactis CV56, complete genome',\n", |
||
| 1456 | " 'NC_017483.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56A, complete sequence',\n", |
||
| 1457 | " 'NC_017487.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56B, complete sequence',\n", |
||
| 1458 | " 'NC_017484.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56C, complete sequence',\n", |
||
| 1459 | " 'NC_017485.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56D, complete sequence',\n", |
||
| 1460 | " 'NC_017488.1 Lactococcus lactis subsp. lactis CV56 plasmid pCV56E, complete sequence',\n", |
||
| 1461 | " 'NC_017244.1 Brucella melitensis M28 chromosome 1, complete sequence',\n", |
||
| 1462 | " 'NC_017245.1 Brucella melitensis M28 chromosome 2, complete sequence',\n", |
||
| 1463 | " 'NC_015259.1 Polymorphum gilvum SL003B-26A1, complete genome',\n", |
||
| 1464 | " 'NC_015258.1 Polymorphum gilvum SL003B-26A1 plasmid pSL003B, complete sequence',\n", |
||
| 1465 | " 'NC_015277.1 Sphingobacterium sp. 21, complete genome',\n", |
||
| 1466 | " 'NC_016783.1 Corynebacterium diphtheriae INCA 402, complete genome',\n", |
||
| 1467 | " 'NC_016800.1 Corynebacterium diphtheriae BH8, complete genome',\n", |
||
| 1468 | " 'NC_017033.1 Frateuria aurantia DSM 6220, complete genome',\n", |
||
| 1469 | " 'NC_019960.1 Prevotella dentalis DSM 3688 chromosome 1, complete sequence',\n", |
||
| 1470 | " 'NC_019968.1 Prevotella dentalis DSM 3688 chromosome 2, complete sequence',\n", |
||
| 1471 | " 'NC_019961.1 Prevotella dentalis DSM 3688 plasmid pPREDE01, complete sequence',\n", |
||
| 1472 | " 'NC_019969.1 Prevotella dentalis DSM 3688 plasmid pPREDE02, complete sequence',\n", |
||
| 1473 | " 'NC_019892.1 Singulisphaera acidiphila DSM 18658, complete genome',\n", |
||
| 1474 | " 'NC_019893.1 Singulisphaera acidiphila DSM 18658 plasmid pSINAC01, complete sequence',\n", |
||
| 1475 | " 'NC_019894.1 Singulisphaera acidiphila DSM 18658 plasmid pSINAC02, complete sequence',\n", |
||
| 1476 | " 'NC_019895.1 Singulisphaera acidiphila DSM 18658 plasmid pSINAC03, complete sequence',\n", |
||
| 1477 | " 'NC_017098.1 Spirochaeta africana DSM 8902, complete genome',\n", |
||
| 1478 | " 'NC_017770.1 Solitalea canadensis DSM 3403, complete genome',\n", |
||
| 1479 | " 'NC_016787.1 Corynebacterium diphtheriae HC03, complete genome',\n", |
||
| 1480 | " 'NC_020272.1 Bacillus amyloliquefaciens IT-45, complete genome',\n", |
||
| 1481 | " 'NC_020273.1 Bacillus amyloliquefaciens IT-45 plasmid pBA45-1, whole genome shotgun sequence',\n", |
||
| 1482 | " 'NC_021171.1 Bacillus sp. 1NLA3E, complete genome',\n", |
||
| 1483 | " 'NZ_CP007053.1 Opitutaceae bacterium TAV5, complete genome',\n", |
||
| 1484 | " 'NZ_CP007054.1 Opitutaceae bacterium TAV5 plasmid, complete sequence',\n", |
||
| 1485 | " 'NC_016745.1 Oceanimonas sp. GK1, complete genome',\n", |
||
| 1486 | " 'NC_016746.1 Oceanimonas sp. GK1 plasmid pOCEGK01, complete sequence',\n", |
||
| 1487 | " 'NC_016747.1 Oceanimonas sp. GK1 plasmid pOCEGK02, complete sequence',\n", |
||
| 1488 | " 'NZ_CP007035.1 Niabella soli DSM 19437, complete genome',\n", |
||
| 1489 | " 'NC_019903.1 Desulfitobacterium dichloroeliminans LMG P-21439, complete genome',\n", |
||
| 1490 | " 'NC_018017.1 Desulfitobacterium dehalogenans ATCC 51507, complete genome',\n", |
||
| 1491 | " 'NC_016791.1 Clostridium sp. BNL1100, complete genome',\n", |
||
| 1492 | " 'NZ_CP006932.1 Candidatus Hepatoplasma crinochetorum Av, complete genome',\n", |
||
| 1493 | " 'NZ_CP006829.1 Thalassolituus oleivorans R6-15, complete genome',\n", |
||
| 1494 | " 'NZ_CP007122.1 Lactobacillus paracasei N1115, complete genome',\n", |
||
| 1495 | " 'NZ_CP007123.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 1496 | " 'NZ_CP007124.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 1497 | " 'NZ_CP007125.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 1498 | " 'NZ_CP007126.1 Lactobacillus paracasei N1115 plasmid, complete sequence',\n", |
||
| 1499 | " 'NC_022568.1 Listeria monocytogenes EGD, complete genome',\n", |
||
| 1500 | " 'NZ_CP007244.1 Bacillus amyloliquefaciens subsp. plantarum TrigoCor1448, complete genome',\n", |
||
| 1501 | " 'NZ_CP006742.1 Bacillus anthracis str. SVA11, complete genome',\n", |
||
| 1502 | " 'NZ_CP006743.1 Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence',\n", |
||
| 1503 | " 'NZ_CP006744.1 Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence',\n", |
||
| 1504 | " 'NZ_CP007183.1 Campylobacter coli RM1875, complete genome',\n", |
||
| 1505 | " 'NZ_CP007185.1 Campylobacter coli RM1875 plasmid pRM1875_2.4kb, complete sequence',\n", |
||
| 1506 | " 'NZ_CP007186.1 Campylobacter coli RM1875 plasmid pRM1875_3.3kb, complete sequence',\n", |
||
| 1507 | " 'NZ_CP007187.1 Campylobacter coli RM1875 plasmid pRM1875_3.4kbp, complete sequence',\n", |
||
| 1508 | " 'NZ_CP007184.1 Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence',\n", |
||
| 1509 | " 'NZ_CP007181.1 Campylobacter coli RM4661, complete genome',\n", |
||
| 1510 | " 'NZ_CP007182.1 Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence',\n", |
||
| 1511 | " 'NZ_CP007179.1 Campylobacter coli RM5611, complete genome',\n", |
||
| 1512 | " 'NZ_CP007180.1 Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence',\n", |
||
| 1513 | " 'NZ_CP004368.1 Burkholderia pseudomallei MSHR520 chromosome 1, complete sequence',\n", |
||
| 1514 | " 'NZ_CP004369.1 Burkholderia pseudomallei MSHR520 chromosome 2, complete sequence',\n", |
||
| 1515 | " 'NZ_CP004373.1 Gluconobacter oxydans DSM 3504, complete genome',\n", |
||
| 1516 | " 'NZ_CP006571.1 Chlamydia avium 10DC88, complete genome',\n", |
||
| 1517 | " 'NZ_CP006572.1 Chlamydia avium 10DC88 plasmid p10DC88, complete sequence',\n", |
||
| 1518 | " 'NZ_CP007410.1 Pseudomonas brassicacearum strain DF41, complete genome',\n", |
||
| 1519 | " 'NZ_CP007436.1 Bacillus pumilus strain MTCC B6033, complete genome',\n", |
||
| 1520 | " 'NZ_CP007441.1 Pseudomonas stutzeri strain 28a24, complete genome',\n", |
||
| 1521 | " 'NC_022904.2 Pandoraea pnomenusa 3kgm, complete genome',\n", |
||
| 1522 | " 'NC_022198.1 Corynebacterium argentoratense DSM 44202, complete genome',\n", |
||
| 1523 | " 'NC_022117.1 Chlamydia trachomatis strain F/1-93, complete genome',\n", |
||
| 1524 | " 'NC_022118.1 Chlamydia trachomatis strain F/6-94, complete genome',\n", |
||
| 1525 | " 'NC_022873.1 Bacillus thuringiensis YBT-1518, complete genome',\n", |
||
| 1526 | " 'NC_020124.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0228, complete sequence',\n", |
||
| 1527 | " 'NC_022874.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0229, complete sequence',\n", |
||
| 1528 | " 'NC_022875.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0230, complete sequence',\n", |
||
| 1529 | " 'NC_022876.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0231, complete sequence',\n", |
||
| 1530 | " 'NC_022877.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence',\n", |
||
| 1531 | " 'NC_022882.1 Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence',\n", |
||
| 1532 | " 'NC_022886.1 Helicobacter pylori BM012A, complete genome',\n", |
||
| 1533 | " 'NC_022911.1 Helicobacter pylori BM012S, complete genome',\n", |
||
| 1534 | " 'NZ_CP017152.1 Acinetobacter baumannii DU202, complete genome',\n", |
||
| 1535 | " 'NZ_CP010979.1 Pseudomonas putida S13.1.2, complete genome',\n", |
||
| 1536 | " 'NC_022900.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023, complete genome',\n", |
||
| 1537 | " 'NC_022901.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 1538 | " 'NC_022913.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 1539 | " 'NC_022902.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 1540 | " 'NC_022903.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 1541 | " 'NC_022910.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence',\n", |
||
| 1542 | " 'NC_022909.1 Lactobacillus johnsonii N6.2, complete genome',\n", |
||
| 1543 | " 'NZ_CP009365.1 Pseudomonas soli strain SJ10, complete genome',\n", |
||
| 1544 | " 'NC_022964.1 Dehalococcoides mccartyi GY50, complete genome',\n", |
||
| 1545 | " 'NZ_HG738867.1 Escherichia coli str. K-12 substr. MC4100 complete genome',\n", |
||
| 1546 | " 'NC_022535.1 Rhizobium sp. IRBG74 circular chromosome, complete genome',\n", |
||
| 1547 | " 'NC_022545.1 Rhizobium sp. IRBG74 linear chromosome, complete genome',\n", |
||
| 1548 | " 'NC_022536.1 Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence',\n", |
||
| 1549 | " 'NZ_LN794217.1 Rickettsia monacensis, strain IrR/Munich, complete genome',\n", |
||
| 1550 | " 'NZ_CP011913.1 Corynebacterium ulcerans FRC58, complete genome',\n", |
||
| 1551 | " 'NC_019896.1 Bacillus subtilis subsp. subtilis str. BSP1, complete genome',\n", |
||
| 1552 | " 'NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome',\n", |
||
| 1553 | " 'NC_019908.1 Brachyspira pilosicoli P43/6/78, complete genome',\n", |
||
| 1554 | " 'NC_019904.1 Echinicola vietnamensis DSM 17526, complete genome',\n", |
||
| 1555 | " 'NC_019905.1 Pseudomonas putida HB3267, complete genome',\n", |
||
| 1556 | " 'NC_019906.1 Pseudomonas putida HB3267 plasmid pPC9, complete sequence',\n", |
||
| 1557 | " 'NC_019907.1 Liberibacter crescens BT-1, complete genome',\n", |
||
| 1558 | " 'NC_019940.1 Thioflavicoccus mobilis 8321, complete genome',\n", |
||
| 1559 | " 'NC_019941.1 Thioflavicoccus mobilis 8321 plasmid pTHIMO01, complete sequence',\n", |
||
| 1560 | " 'NC_019936.1 Pseudomonas stutzeri RCH2, complete genome',\n", |
||
| 1561 | " 'NC_019937.1 Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence',\n", |
||
| 1562 | " 'NC_019938.1 Pseudomonas stutzeri RCH2 plasmid pPSEST02, complete sequence',\n", |
||
| 1563 | " 'NC_019939.1 Pseudomonas stutzeri RCH2 plasmid pPSEST03, complete sequence',\n", |
||
| 1564 | " 'NC_019955.1 Vibrio parahaemolyticus BB22OP chromosome 1, complete sequence',\n", |
||
| 1565 | " 'NC_019971.1 Vibrio parahaemolyticus BB22OP chromosome 2, complete sequence',\n", |
||
| 1566 | " 'NC_019970.1 Thermoanaerobacterium thermosaccharolyticum M0795, complete genome',\n", |
||
| 1567 | " 'NC_019956.1 Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence',\n", |
||
| 1568 | " 'NC_019966.1 Mycobacterium sp. JS623, complete genome',\n", |
||
| 1569 | " 'NC_019957.1 Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence',\n", |
||
| 1570 | " 'NC_019958.1 Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence',\n", |
||
| 1571 | " 'NC_019959.1 Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence',\n", |
||
| 1572 | " 'NC_019978.1 Halobacteroides halobius DSM 5150, complete genome',\n", |
||
| 1573 | " 'NC_019673.1 Saccharothrix espanaensis DSM 44229 complete genome',\n", |
||
| 1574 | " 'NC_019949.1 Mycoplasma cynos C142 complete genome',\n", |
||
| 1575 | " 'NC_019954.2 Tepidanaerobacter acetatoxydans Re1 complete genome',\n", |
||
| 1576 | " 'NZ_CP007528.1 Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0968, complete genome',\n", |
||
| 1577 | " 'NZ_CP007529.1 Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0968 plasmid00, complete sequence',\n", |
||
| 1578 | " 'NZ_CP012347.1 Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120, complete genome',\n", |
||
| 1579 | " 'NZ_CP012348.1 Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence',\n", |
||
| 1580 | " 'NZ_CP007255.1 Rhodococcus erythropolis R138, complete genome',\n", |
||
| 1581 | " 'NZ_CP007256.1 Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence',\n", |
||
| 1582 | " 'NZ_CP007257.1 Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence',\n", |
||
| 1583 | " 'NZ_CP015880.1 Ensifer adhaerens strain Casida A chromosome, complete genome',\n", |
||
| 1584 | " 'NZ_CP015881.1 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence',\n", |
||
| 1585 | " 'NZ_CP015882.1 Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence',\n", |
||
| 1586 | " 'NZ_CP007691.1 Brucella suis bv. 2 strain PT09143 chromosome I, complete sequence',\n", |
||
| 1587 | " 'NZ_CP007692.1 Brucella suis bv. 2 strain PT09143 chromosome II, complete sequence',\n", |
||
| 1588 | " 'NZ_CP007693.1 Brucella suis bv. 2 strain PT09172 chromosome I, complete sequence',\n", |
||
| 1589 | " 'NZ_CP007694.1 Brucella suis bv. 2 strain PT09172 chromosome II, complete sequence',\n", |
||
| 1590 | " 'NZ_CP007697.1 Brucella suis bv. 2 strain Bs364CITA chromosome I, complete sequence',\n", |
||
| 1591 | " 'NZ_CP007698.1 Brucella suis bv. 2 strain Bs364CITA chromosome II, complete sequence',\n", |
||
| 1592 | " 'NZ_CP007720.1 Brucella suis bv. 2 strain Bs396CITA chromosome I, complete sequence',\n", |
||
| 1593 | " 'NZ_CP007721.1 Brucella suis bv. 2 strain Bs396CITA chromosome II, complete sequence',\n", |
||
| 1594 | " 'NZ_CP007805.1 Haemophilus influenzae CGSHiCZ412602, complete genome',\n", |
||
| 1595 | " 'NZ_CP007803.1 Mycobacterium tuberculosis K, complete genome',\n", |
||
| 1596 | " 'NZ_CP006696.1 Xylella fastidiosa subsp. sandyi Ann-1, complete genome',\n", |
||
| 1597 | " 'NZ_CP006697.1 Xylella fastidiosa subsp. sandyi Ann-1 plasmid unnamed1, complete sequence',\n", |
||
| 1598 | " 'NZ_CP006740.1 Xylella fastidiosa MUL0034, complete genome',\n", |
||
| 1599 | " 'NZ_CP006739.1 Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence',\n", |
||
| 1600 | " 'NZ_CP006986.1 Rhizobium sp. IE4771 chromosome, complete genome',\n", |
||
| 1601 | " 'NZ_CP006987.1 Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence',\n", |
||
| 1602 | " 'NZ_CP006988.1 Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence',\n", |
||
| 1603 | " 'NZ_CP006989.1 Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence',\n", |
||
| 1604 | " 'NZ_CP006990.1 Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence',\n", |
||
| 1605 | " 'NZ_CP006991.1 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence',\n", |
||
| 1606 | " 'NZ_CP008696.1 Pseudomonas chlororaphis strain PA23, complete genome',\n", |
||
| 1607 | " 'NZ_CP006819.1 Streptococcus thermophilus ASCC 1275, complete genome',\n", |
||
| 1608 | " 'NZ_CP007695.1 Brucella suis bv. 2 strain Bs143CITA chromosome I, complete sequence',\n", |
||
| 1609 | " 'NZ_CP007696.1 Brucella suis bv. 2 strain Bs143CITA chromosome II, complete sequence',\n", |
||
| 1610 | " 'NC_020533.1 Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 16035',\n", |
||
| 1611 | " 'NC_020534.1 Staphylococcus aureus subsp. aureus ST228 plasmid pI4T8 complete sequence, isolate 16035',\n", |
||
| 1612 | " 'NC_020566.1 Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 16125',\n", |
||
| 1613 | " 'NC_020535.1 Staphylococcus aureus subsp. aureus ST228 plasmid pI5S5 complete sequence, isolate 16125',\n", |
||
| 1614 | " 'NC_020568.1 Staphylococcus aureus subsp. aureus ST228 complete genome, isolate 18583',\n", |
||
| 1615 | " 'NC_020539.1 Staphylococcus aureus subsp. aureus ST228 plasmid pI8T7 complete sequence, isolate 18583',\n", |
||
| 1616 | " 'NC_021173.1 Burkholderia thailandensis MSMB121 chromosome 1, complete sequence',\n", |
||
| 1617 | " 'NC_021174.1 Burkholderia thailandensis MSMB121 chromosome 2, complete sequence',\n", |
||
| 1618 | " 'NC_021176.1 Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete genome',\n", |
||
| 1619 | " 'NC_021175.1 Streptococcus cristatus AS 1.3089, complete genome',\n", |
||
| 1620 | " 'NC_021177.1 Streptomyces fulvissimus DSM 40593, complete sequence',\n", |
||
| 1621 | " 'NZ_CP010539.1 Mycoplasma pneumoniae 19294, complete genome',\n", |
||
| 1622 | " 'NC_021182.1 Clostridium pasteurianum BC1, complete genome',\n", |
||
| 1623 | " 'NC_021183.1 Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence',\n", |
||
| 1624 | " 'NC_021181.2 Lactobacillus acidophilus La-14, complete genome',\n", |
||
| 1625 | " 'NC_021194.1 Mycobacterium tuberculosis EAI5/NITR206, complete genome',\n", |
||
| 1626 | " 'NC_021191.1 Actinoplanes sp. N902-109, complete genome',\n", |
||
| 1627 | " 'NC_021200.1 Mycobacterium avium subsp. paratuberculosis MAP4, complete genome',\n", |
||
| 1628 | " 'NC_021213.1 Streptococcus suis TL13, complete genome',\n", |
||
| 1629 | " 'NZ_CP009144.1 Sinorhizobium meliloti strain RMO17, complete genome',\n", |
||
| 1630 | " 'NZ_CP009145.1 Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence',\n", |
||
| 1631 | " 'NZ_CP009146.1 Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence',\n", |
||
| 1632 | " 'NZ_CP009215.1 Corynebacterium ureicelerivorans strain IMMIB RIV-2301, complete genome',\n", |
||
| 1633 | " 'NZ_CP009216.1 Corynebacterium ureicelerivorans strain IMMIB RIV-2301 plasmid unnamed, complete sequence',\n", |
||
| 1634 | " 'NZ_CP008853.1 Bacillus anthracis strain Cvac02, complete genome',\n", |
||
| 1635 | " 'NZ_CP008855.1 Bacillus sp. X1(2014), complete genome',\n", |
||
| 1636 | " 'NZ_CP009278.1 Sphingobacterium sp. ML3W, complete genome',\n", |
||
| 1637 | " 'NZ_CP007607.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520, complete genome',\n", |
||
| 1638 | " 'NZ_CP007612.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB11, complete sequence',\n", |
||
| 1639 | " 'NZ_CP007608.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB2062, complete sequence',\n", |
||
| 1640 | " 'NZ_CP007615.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence',\n", |
||
| 1641 | " 'NZ_CP007616.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence',\n", |
||
| 1642 | " 'NZ_CP007613.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB69, complete sequence',\n", |
||
| 1643 | " 'NZ_CP007609.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB7921, complete sequence',\n", |
||
| 1644 | " 'NZ_CP007610.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB8240, complete sequence',\n", |
||
| 1645 | " 'NZ_CP007611.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB8513, complete sequence',\n", |
||
| 1646 | " 'NZ_CP007614.1 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence',\n", |
||
| 1647 | " 'NZ_CP003424.1 Serratia sp. SCBI, complete genome',\n", |
||
| 1648 | " 'NZ_CP003425.1 Serratia sp. SCBI plasmid SCBI_Pl, complete sequence',\n", |
||
| 1649 | " 'NZ_CP006683.1 Melissococcus plutonius S1, complete genome',\n", |
||
| 1650 | " 'NZ_CP006684.1 Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence',\n", |
||
| 1651 | " 'NZ_CP009239.1 Cellulophaga lytica strain HI1, complete genome',\n", |
||
| 1652 | " 'NZ_CP009089.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE7-100819, complete genome',\n", |
||
| 1653 | " 'NZ_CP008897.1 Enterobacter cloacae ECNIH3, complete genome',\n", |
||
| 1654 | " 'NZ_CP008898.1 Enterobacter cloacae ECNIH3 plasmid pENT-576, complete sequence',\n", |
||
| 1655 | " 'NZ_CP008899.1 Enterobacter cloacae ECNIH3 plasmid pENT-8a4, complete sequence',\n", |
||
| 1656 | " 'NZ_CP008900.1 Enterobacter cloacae ECNIH3 plasmid pENT-d4a, complete sequence',\n", |
||
| 1657 | " 'NZ_CP008901.1 Enterobacter cloacae ECNIH3 plasmid pKPC-47e, complete sequence',\n", |
||
| 1658 | " 'NZ_CP009090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE8-1021710, complete genome',\n", |
||
| 1659 | " 'NZ_CP008905.1 Enterobacter cloacae ECR091, complete genome',\n", |
||
| 1660 | " 'NZ_CP008906.1 Enterobacter cloacae ECR091 plasmid pENT-08e, complete sequence',\n", |
||
| 1661 | " 'NZ_CP008907.1 Enterobacter cloacae ECR091 plasmid pENT-4bd, complete sequence',\n", |
||
| 1662 | " 'NZ_CP008908.1 Enterobacter cloacae ECR091 plasmid pKPC-47e, complete sequence',\n", |
||
| 1663 | " 'NZ_CP009091.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE9-10012, complete genome',\n", |
||
| 1664 | " 'NZ_CP008943.1 Yersinia pseudotuberculosis strain ATCC 6904, complete genome',\n", |
||
| 1665 | " 'NZ_CP009092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE10-10052, complete genome',\n", |
||
| 1666 | " 'NZ_CP009093.1 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE11-10058, complete genome',\n", |
||
| 1667 | " 'NZ_CP009085.2 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE3-98983-4, complete genome',\n", |
||
| 1668 | " 'NZ_CP009084.2 Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-SE2-98984-6, complete genome',\n", |
||
| 1669 | " 'NZ_CP007229.1 Mycoplasma dispar strain ATCC 27140, complete genome',\n", |
||
| 1670 | " 'NZ_CP016174.1 Amycolatopsis orientalis strain B-37, complete genome',\n", |
||
| 1671 | " 'NZ_CP010954.1 Sphingobium sp. YBL2, complete genome',\n", |
||
| 1672 | " 'NZ_CP010955.1 Sphingobium sp. YBL2 plasmid 1pYBL2-1, complete sequence',\n", |
||
| 1673 | " 'NZ_CP010956.1 Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence',\n", |
||
| 1674 | " 'NZ_CP010957.1 Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence',\n", |
||
| 1675 | " 'NZ_CP010958.1 Sphingobium sp. YBL2 plasmid 4pYBL2-4, complete sequence',\n", |
||
| 1676 | " 'NZ_CP010959.1 Sphingobium sp. YBL2 plasmid 5pYBL2-5, complete sequence',\n", |
||
| 1677 | " 'NZ_CP010960.1 Sphingobium sp. YBL2 plasmid 6pYBL2-6, complete sequence',\n", |
||
| 1678 | " 'NZ_CP009677.1 Mycoplasma hominis strain AF1, complete genome',\n", |
||
| 1679 | " 'NZ_CP007166.1 Xanthomonas oryzae pv. oryzae PXO86, complete genome',\n", |
||
| 1680 | " 'NZ_CP010976.1 Paenibacillus sp. IHBB 10380, complete genome',\n", |
||
| 1681 | " 'NZ_CP010977.1 Paenibacillus sp. IHBB 10380 plasmid, complete sequence',\n", |
||
| 1682 | " 'NZ_CP011005.1 Arthrobacter sp. IHBB 11108, complete genome',\n", |
||
| 1683 | " 'NZ_CP011006.1 Arthrobacter sp. IHBB 11108 plasmid pAG001, complete sequence',\n", |
||
| 1684 | " 'NZ_CP011004.1 Listeria monocytogenes strain N2306, complete genome',\n", |
||
| 1685 | " 'NZ_CP007699.2 Streptomyces lydicus strain A02 chromosome, complete genome',\n", |
||
| 1686 | " 'NZ_LN680001.1 Bacillus sp. BS34A genome assembly, chromosome: I',\n", |
||
| 1687 | " 'NZ_LM995445.1 Mycoplasma capricolum subsp. capripneumoniae genome assembly 9231-Abomsa assembly V8, chromosome : I',\n", |
||
| 1688 | " 'NZ_LN554882.1 Chlamydophila abortus genome assembly CAAB7, chromosome : 1',\n", |
||
| 1689 | " 'NZ_LM995446.1 Escherichia coli genome assembly EcRV308Chr, chromosome : 1',\n", |
||
| 1690 | " 'NZ_LM997412.1 Peptoniphilus sp. ING2-D1G genome assembly, chromosome: I',\n", |
||
| 1691 | " 'NZ_LN794158.1 Candidatus Methylopumilus turicensis genome assembly Candidatus Methylopumilus turicensis MMS-10A-171, chromosome : 1',\n", |
||
| 1692 | " 'NZ_LM651928.1 Shigella flexneri genome assembly NCTC1, chromosome : 1',\n", |
||
| 1693 | " 'NZ_LK936442.1 Burkholderia pseudomallei genome assembly BP_3921g, chromosome : 1',\n", |
||
| 1694 | " 'NZ_LK936443.1 Burkholderia pseudomallei genome assembly BP_3921g, chromosome : 2',\n", |
||
| 1695 | " 'NZ_LN614827.1 Legionella fallonii LLAP-10 genome assembly LFA, chromosome : I',\n", |
||
| 1696 | " 'NZ_LN614828.1 Legionella fallonii LLAP-10 genome assembly LFA, plasmid : II',\n", |
||
| 1697 | " 'NZ_LN614829.1 Legionella fallonii LLAP-10 genome assembly LFA, plasmid : III',\n", |
||
| 1698 | " 'NZ_CP007686.1 Listeria monocytogenes strain L2624, complete genome',\n", |
||
| 1699 | " 'NZ_CP007685.1 Listeria monocytogenes strain L2676, complete genome',\n", |
||
| 1700 | " 'NZ_CP011511.1 Shigella boydii strain ATCC 9210, complete genome',\n", |
||
| 1701 | " 'NZ_CP007684.1 Listeria monocytogenes strain L2626, complete genome',\n", |
||
| 1702 | " 'NZ_CP011501.1 Pandoraea apista strain AU2161, complete genome',\n", |
||
| 1703 | " 'NZ_CP011509.1 Archangium gephyra strain DSM 2261, complete genome',\n", |
||
| 1704 | " 'NZ_CP009498.1 Endomicrobium proavitum strain Rsa215, complete genome',\n", |
||
| 1705 | " 'NZ_CP011827.2 Xanthomonas citri pv. citri strain jx-6, complete genome',\n", |
||
| 1706 | " 'NZ_CP013665.1 Xanthomonas citri pv. citri strain jx-6 plasmid pXAC33, complete sequence',\n", |
||
| 1707 | " 'NZ_CP013664.1 Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence',\n", |
||
| 1708 | " 'NZ_CP011805.1 Altererythrobacter marensis strain KCTC 22370, complete genome',\n", |
||
| 1709 | " 'NZ_CP007601.1 Staphylococcus capitis subsp. capitis strain AYP1020, complete genome',\n", |
||
| 1710 | " 'NZ_CP007602.1 Staphylococcus capitis subsp. capitis strain AYP1020 plasmid pAYP1020, complete sequence',\n", |
||
| 1711 | " 'NZ_CP011503.1 Burkholderia pyrrocinia strain DSM 10685 chromosome 1, complete sequence',\n", |
||
| 1712 | " 'NZ_CP011504.1 Burkholderia pyrrocinia strain DSM 10685 chromosome 2, complete sequence',\n", |
||
| 1713 | " 'NZ_CP011505.1 Burkholderia pyrrocinia strain DSM 10685 chromosome 3, complete sequence',\n", |
||
| 1714 | " 'NZ_CP011506.1 Burkholderia pyrrocinia strain DSM 10685 plasmid p2327, complete sequence',\n", |
||
| 1715 | " 'NZ_CP011770.1 Croceicoccus naphthovorans strain PQ-2, complete genome',\n", |
||
| 1716 | " 'NZ_CP011771.1 Croceicoccus naphthovorans strain PQ-2 plasmid p1, complete sequence',\n", |
||
| 1717 | " 'NZ_CP011772.1 Croceicoccus naphthovorans strain PQ-2 plasmid p2, complete sequence',\n", |
||
| 1718 | " 'NZ_CP011807.3 Pandoraea faecigallinarum strain DSM 23572, complete genome',\n", |
||
| 1719 | " 'NZ_CP011808.2 Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence',\n", |
||
| 1720 | " 'NZ_CP011809.2 Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence',\n", |
||
| 1721 | " 'NZ_CP006636.1 Escherichia coli PCN061, complete genome',\n", |
||
| 1722 | " 'NZ_CP006637.1 Escherichia coli PCN061 plasmid PCN061p1, complete sequence',\n", |
||
| 1723 | " 'NZ_CP006638.1 Escherichia coli PCN061 plasmid PCN061p2, complete sequence',\n", |
||
| 1724 | " 'NZ_CP006639.1 Escherichia coli PCN061 plasmid PCN061p3, complete sequence',\n", |
||
| 1725 | " 'NZ_CP006640.1 Escherichia coli PCN061 plasmid PCN061p4, complete sequence',\n", |
||
| 1726 | " 'NZ_CP006641.1 Escherichia coli PCN061 plasmid PCN061p5, complete sequence',\n", |
||
| 1727 | " 'NZ_CP006642.1 Escherichia coli PCN061 plasmid PCN061p6, complete sequence',\n", |
||
| 1728 | " 'NZ_CP009743.1 Burkholderia contaminans strain MS14 chromosome 1, complete sequence',\n", |
||
| 1729 | " 'NZ_CP009744.1 Burkholderia contaminans strain MS14 chromosome 2, complete sequence',\n", |
||
| 1730 | " 'NZ_CP009745.1 Burkholderia contaminans strain MS14 chromosome 3, complete sequence',\n", |
||
| 1731 | " 'NZ_CP011855.1 Spiroplasma atrichopogonis strain GNAT3597, complete genome',\n", |
||
| 1732 | " 'NZ_CP011856.1 Spiroplasma eriocheiris strain DSM 21848, complete genome',\n", |
||
| 1733 | " 'NZ_CP011798.1 Enterobacter cloacae strain UW5, complete genome',\n", |
||
| 1734 | " 'NZ_CP007667.1 Neisseria meningitidis strain B6116/77, complete genome',\n", |
||
| 1735 | " 'NZ_CP007668.1 Neisseria meningitidis M0579, complete genome',\n", |
||
| 1736 | " 'NZ_CP011882.1 Bacillus subtilis strain TO-A JPC, complete genome',\n", |
||
| 1737 | " 'NZ_CP011804.1 Clostridium carboxidivorans P7 plasmid, complete sequence',\n", |
||
| 1738 | " 'NZ_CP011803.1 Clostridium carboxidivorans P7, complete genome',\n", |
||
| 1739 | " 'NZ_CP005969.1 Pseudomonas syringae pv. syringae B301D, complete genome',\n", |
||
| 1740 | " 'NZ_CP007584.2 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1735, complete genome',\n", |
||
| 1741 | " 'NZ_CP014707.1 Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence',\n", |
||
| 1742 | " 'NZ_CP006003.1 Myxococcus fulvus 124B02, complete genome',\n", |
||
| 1743 | " 'NZ_CP011374.1 Moraxella bovoculi strain 58069, complete genome',\n", |
||
| 1744 | " 'NZ_CP011375.1 Moraxella bovoculi strain 58069 plasmid, complete sequence',\n", |
||
| 1745 | " 'NZ_CP011376.1 Moraxella bovoculi strain 22581, complete genome',\n", |
||
| 1746 | " 'NZ_CP011377.1 Moraxella bovoculi strain 23343, complete genome',\n", |
||
| 1747 | " 'NZ_CP011378.1 Moraxella bovoculi strain 28389, complete genome',\n", |
||
| 1748 | " 'NZ_CP011379.1 Moraxella bovoculi strain 33362, complete genome',\n", |
||
| 1749 | " 'NZ_CP011380.2 Moraxella bovoculi strain 57922, complete genome',\n", |
||
| 1750 | " 'NZ_CP011365.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_015, complete genome',\n", |
||
| 1751 | " 'NZ_CP007497.1 Streptococcus suis strain ZY05719, complete genome',\n", |
||
| 1752 | " 'NZ_CP007537.1 Streptococcus pyogenes strain AP1, complete genome',\n", |
||
| 1753 | " 'NZ_CP009922.2 Streptomyces xiamenensis strain 318, complete genome',\n", |
||
| 1754 | " 'NZ_CP011114.1 Paenibacillus durus ATCC 35681, complete genome',\n", |
||
| 1755 | " 'NZ_CP011366.1 Salinicoccus halodurans strain H3B36, complete genome',\n", |
||
| 1756 | " 'NZ_CP011398.2 Listeria monocytogenes strain CFSAN008100 chromosome, complete genome',\n", |
||
| 1757 | " 'NZ_CP011399.1 Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence',\n", |
||
| 1758 | " 'NZ_AP012555.1 Mycobacterium avium subsp. hominissuis TH135 chromosomal DNA, complete genome',\n", |
||
| 1759 | " 'NZ_AP012556.1 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135 DNA, complete genome',\n", |
||
| 1760 | " 'NZ_AP013354.1 Helicobacter pylori 26695-1 DNA, complete genome',\n", |
||
| 1761 | " 'NZ_AP013356.1 Helicobacter pylori 26695-1CL DNA, complete genome',\n", |
||
| 1762 | " 'NZ_AP013355.1 Helicobacter pylori 26695-1CH DNA, complete genome',\n", |
||
| 1763 | " 'NZ_AP013293.1 Candidatus Sulcia muelleri PSPU DNA, complete genome',\n", |
||
| 1764 | " 'NZ_AP014582.1 Bordetella bronchiseptica DNA, complete genome, strain: S798',\n", |
||
| 1765 | " 'NZ_AP013294.1 Bacillus sp. OxB-1 DNA, complete genome',\n", |
||
| 1766 | " 'NZ_AP014524.1 Vibrio cholerae MS6 DNA, complete genome, chromosome 1',\n", |
||
| 1767 | " 'NZ_AP014525.1 Vibrio cholerae MS6 DNA, complete genome, chromosome 2',\n", |
||
| 1768 | " 'NZ_AP012549.1 Cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko DNA, complete genome',\n", |
||
| 1769 | " 'NZ_AP014646.1 Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1984',\n", |
||
| 1770 | " 'NZ_AP014622.1 Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1900',\n", |
||
| 1771 | " 'NZ_AP014658.1 Bifidobacterium longum DNA, complete genome, strain: 105-A',\n", |
||
| 1772 | " 'NZ_AP013028.1 Wolbachia endosymbiont of Cimex lectularius DNA, complete genome',\n", |
||
| 1773 | " 'NZ_CP026055.1 Aeromonas caviae strain FDAARGOS_72 chromosome, complete genome',\n", |
||
| 1774 | " 'NZ_CP026052.1 Salmonella enterica strain FDAARGOS_70 chromosome, complete genome',\n", |
||
| 1775 | " 'NZ_CP026053.1 Salmonella enterica strain FDAARGOS_70 plasmid unnamed1, complete sequence',\n", |
||
| 1776 | " 'NZ_CP026054.1 Salmonella enterica strain FDAARGOS_70 plasmid unnamed2, complete sequence',\n", |
||
| 1777 | " 'NZ_CP026051.1 Proteus mirabilis strain FDAARGOS_67 chromosome, complete genome',\n", |
||
| 1778 | " 'NZ_CP026050.1 Serratia marcescens strain FDAARGOS_65 chromosome, complete genome',\n", |
||
| 1779 | " 'NZ_CP026047.1 Raoultella planticola strain FDAARGOS_64 chromosome, complete genome',\n", |
||
| 1780 | " 'NZ_CP026048.1 Raoultella planticola strain FDAARGOS_64 plasmid unnamed1, complete sequence',\n", |
||
| 1781 | " 'NZ_CP026049.1 Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence',\n", |
||
| 1782 | " 'NZ_CP026046.1 Morganella morganii strain FDAARGOS_63 chromosome, complete genome',\n", |
||
| 1783 | " 'NZ_CP026045.1 Citrobacter freundii strain FDAARGOS_61 chromosome, complete genome',\n", |
||
| 1784 | " 'NZ_CP026044.1 Proteus mirabilis strain FDAARGOS_60 chromosome, complete genome',\n", |
||
| 1785 | " 'NZ_CP009850.1 Enterobacter cloacae strain ECNIH4, complete genome',\n", |
||
| 1786 | " 'NZ_CP009851.1 Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence',\n", |
||
| 1787 | " 'NZ_CP009852.1 Enterobacter cloacae strain ECNIH4 plasmid pENT-e56, complete sequence',\n", |
||
| 1788 | " 'NZ_CP009853.1 Enterobacter cloacae strain ECNIH4 plasmid pKPC-860, complete sequence',\n", |
||
| 1789 | " 'NZ_CP009880.1 Pantoea sp. PSNIH1, complete genome',\n", |
||
| 1790 | " 'NZ_CP009881.1 Pantoea sp. PSNIH1 plasmid pKPC-1c5, complete sequence',\n", |
||
| 1791 | " 'NZ_CP010325.1 Pantoea sp. PSNIH1 plasmid pPSP-057, complete sequence',\n", |
||
| 1792 | " 'NZ_CP009882.1 Pantoea sp. PSNIH1 plasmid pPSP-26e, complete sequence',\n", |
||
| 1793 | " 'NZ_CP010326.1 Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence',\n", |
||
| 1794 | " 'NZ_CP009883.1 Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence',\n", |
||
| 1795 | " 'NZ_CP009884.1 Pantoea sp. PSNIH1 plasmid pPSP-ee2, complete sequence',\n", |
||
| 1796 | " 'NZ_CP009854.1 Enterobacter cloacae strain ECNIH5, complete genome',\n", |
||
| 1797 | " 'NZ_CP009855.1 Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence',\n", |
||
| 1798 | " 'NZ_CP009856.1 Enterobacter cloacae strain ECNIH5 plasmid pENT-784, complete sequence',\n", |
||
| 1799 | " 'NZ_CP009857.1 Enterobacter cloacae strain ECNIH5 plasmid pENT-d0d, complete sequence',\n", |
||
| 1800 | " 'NZ_CP009858.1 Enterobacter cloacae strain ECNIH5 plasmid pKPC-47e, complete sequence',\n", |
||
| 1801 | " 'NZ_CP009859.1 Escherichia coli strain ECONIH1, complete genome',\n", |
||
| 1802 | " 'NZ_CP009860.1 Escherichia coli strain ECONIH1 plasmid pECO-824, complete sequence',\n", |
||
| 1803 | " 'NZ_CP009861.1 Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence',\n", |
||
| 1804 | " 'NZ_CP009862.1 Escherichia coli strain ECONIH1 plasmid pKPC-629, complete sequence',\n", |
||
| 1805 | " 'NZ_CP009863.1 Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29, complete genome',\n", |
||
| 1806 | " 'NZ_CP009864.1 Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPC-e4e, complete sequence',\n", |
||
| 1807 | " 'NZ_CP009865.1 Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPN-80a, complete sequence',\n", |
||
| 1808 | " 'NZ_CP009866.1 Pantoea sp. PSNIH2, complete genome',\n", |
||
| 1809 | " 'NZ_CP009867.1 Pantoea sp. PSNIH2 plasmid pKPC-56a, complete sequence',\n", |
||
| 1810 | " 'NZ_CP009868.1 Pantoea sp. PSNIH2 plasmid pPSP-100, complete sequence',\n", |
||
| 1811 | " 'NZ_CP009869.1 Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence',\n", |
||
| 1812 | " 'NZ_CP009870.1 Pantoea sp. PSNIH2 plasmid pPSP-b98, complete sequence',\n", |
||
| 1813 | " 'NZ_CP009871.1 Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence',\n", |
||
| 1814 | " 'NZ_CP012074.1 Prevotella fusca JCM 17724 strain W1435 chromosome 1, complete sequence',\n", |
||
| 1815 | " 'NZ_CP012075.1 Prevotella fusca JCM 17724 strain W1435 chromosome 2, complete sequence',\n", |
||
| 1816 | " 'NZ_CP012067.1 Aggregatibacter aphrophilus strain W10433, complete genome',\n", |
||
| 1817 | " 'NZ_CP012072.1 Actinomyces meyeri strain W712, complete genome',\n", |
||
| 1818 | " 'NZ_CP012073.1 Ottowia sp. oral taxon 894 strain W10237, complete genome',\n", |
||
| 1819 | " 'NZ_CP012037.1 Francisella tularensis subsp. tularensis strain WY96, complete genome',\n", |
||
| 1820 | " 'NZ_CP012328.1 Spiroplasma turonicum strain Tab4c, complete genome',\n", |
||
| 1821 | " 'NZ_CP012332.1 Vulgatibacter incomptus strain DSM 27710, complete genome',\n", |
||
| 1822 | " 'NZ_CP011786.1 Bifidobacterium actinocoloniiforme DSM 22766, complete genome',\n", |
||
| 1823 | " 'NZ_CP011995.1 Porphyromonas gingivalis strain A7436, complete genome',\n", |
||
| 1824 | " 'NZ_CP011339.1 Microcystis panniformis FACHB-1757, complete genome',\n", |
||
| 1825 | " 'NZ_CP010319.1 Streptococcus agalactiae strain GBS85147, complete genome',\n", |
||
| 1826 | " 'NZ_CP012299.1 Microbacterium sp. CGR1, complete genome',\n", |
||
| 1827 | " 'NZ_CP011929.1 Marinobacter sp. CP1, complete genome',\n", |
||
| 1828 | " 'NZ_CP012357.1 Spiroplasma litorale strain TN-1, complete genome',\n", |
||
| 1829 | " 'NZ_CP012358.1 Oblitimonas alkaliphila strain B4199 chromosome, complete genome',\n", |
||
| 1830 | " 'NZ_CP012359.1 Oblitimonas alkaliphila strain C6819 chromosome, complete genome',\n", |
||
| 1831 | " 'NZ_CP012360.1 Oblitimonas alkaliphila strain C6918 chromosome, complete genome',\n", |
||
| 1832 | " 'NZ_CP012362.1 Oblitimonas alkaliphila strain D3318 chromosome, complete genome',\n", |
||
| 1833 | " 'NZ_CP012363.1 Oblitimonas alkaliphila strain E1086 chromosome, complete genome',\n", |
||
| 1834 | " 'NZ_CP014773.1 Mucilaginibacter sp. PAMC 26640 chromosome, complete genome',\n", |
||
| 1835 | " 'NZ_CP014772.1 Mucilaginibacter sp. PAMC 26640 plasmid unnamed, complete sequence',\n", |
||
| 1836 | " 'NZ_CP014771.1 Hymenobacter sp. PAMC 26554 chromosome, complete genome',\n", |
||
| 1837 | " 'NZ_CP014769.1 Hymenobacter sp. PAMC 26554 plasmid unnamed1, complete sequence',\n", |
||
| 1838 | " 'NZ_CP014770.1 Hymenobacter sp. PAMC 26554 plasmid unnamed2, complete sequence',\n", |
||
| 1839 | " 'NZ_CP014805.2 Elizabethkingia anophelis strain CSID_3015183678 chromosome, complete genome',\n", |
||
| 1840 | " 'NZ_CP014858.1 Bacillus subtilis subsp. subtilis strain D12-5 chromosome, complete genome',\n", |
||
| 1841 | " 'NZ_CP014783.1 Bacillus amyloliquefaciens strain B15 chromosome, complete genome',\n", |
||
| 1842 | " 'NZ_CP014790.1 Listeria monocytogenes strain 2015TE24968 chromosome, complete genome',\n", |
||
| 1843 | " 'NZ_CP015985.1 Listeria monocytogenes strain 2015TE24968 plasmid pl2015TE24968, complete sequence',\n", |
||
| 1844 | " 'NZ_CP014840.1 Bacillus subtilis subsp. globigii strain ATCC 49760 chromosome, complete genome',\n", |
||
| 1845 | " 'NZ_CP014784.1 Pseudomonas alcaligenes strain NEB 585, complete genome',\n", |
||
| 1846 | " 'NZ_CP014835.1 Streptococcus halotolerans strain HTS9 chromosome, complete genome',\n", |
||
| 1847 | " 'NZ_CP014856.1 Lysinibacillus sphaericus III(3)7, complete genome',\n", |
||
| 1848 | " 'NZ_CP014857.1 Lysinibacillus sphaericus III(3)7 plasmid, complete sequence',\n", |
||
| 1849 | " 'NZ_CP014847.1 Bacillus thuringiensis strain HD12, complete sequence',\n", |
||
| 1850 | " 'NZ_CP014848.1 Bacillus thuringiensis strain HD12 plasmid pHD120017, complete sequence',\n", |
||
| 1851 | " 'NZ_CP014849.1 Bacillus thuringiensis strain HD12 plasmid pHD120038, complete sequence',\n", |
||
| 1852 | " 'NZ_CP014850.1 Bacillus thuringiensis strain HD12 plasmid pHD120039, complete sequence',\n", |
||
| 1853 | " 'NZ_CP014851.1 Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence',\n", |
||
| 1854 | " 'NZ_CP014852.1 Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence',\n", |
||
| 1855 | " 'NZ_CP014853.1 Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence',\n", |
||
| 1856 | " 'NZ_CP014949.1 Enterococcus faecalis strain LD33, complete genome',\n", |
||
| 1857 | " 'NZ_CP014991.1 Helicobacter himalayensis strain YS1, complete genome',\n", |
||
| 1858 | " 'NZ_CP014352.1 Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome',\n", |
||
| 1859 | " 'NZ_CP014353.1 Acidipropionibacterium acidipropionici strain ATCC 55737 plasmid unnamed, complete sequence',\n", |
||
| 1860 | " 'NZ_CP014867.1 Pseudomonas chlororaphis isolate 189 chromosome, complete genome',\n", |
||
| 1861 | " 'NZ_CP014861.1 Erysipelothrix rhusiopathiae strain GXBY-1 chromosome, complete genome',\n", |
||
| 1862 | " 'NZ_CP014865.1 Rickettsia prowazekii strain Naples-1 chromosome, complete genome',\n", |
||
| 1863 | " 'NZ_CP015004.1 Bacillus subtilis strain SZMC 6179J, complete genome',\n", |
||
| 1864 | " 'NZ_CP015005.1 Aminobacter aminovorans strain KCTC 2477, complete genome',\n", |
||
| 1865 | " 'NZ_CP015006.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence',\n", |
||
| 1866 | " 'NZ_CP015007.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence',\n", |
||
| 1867 | " 'NZ_CP015008.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA03, complete sequence',\n", |
||
| 1868 | " 'NZ_CP015009.1 Aminobacter aminovorans strain KCTC 2477 plasmid pAA04, complete sequence',\n", |
||
| 1869 | " 'NZ_CP010838.1 Bordetella pertussis strain H374, complete genome',\n", |
||
| 1870 | " 'NZ_CP010839.1 Bordetella pertussis strain H378, complete genome',\n", |
||
| 1871 | " 'NZ_CP010840.1 Bordetella pertussis strain H379, complete genome',\n", |
||
| 1872 | " 'NZ_CP014029.2 Klebsiella aerogenes strain FDAARGOS_152 chromosome, complete genome',\n", |
||
| 1873 | " 'NZ_CP014030.2 Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155 chromosome, complete genome',\n", |
||
| 1874 | " 'NZ_CP014031.2 Hafnia paralvei strain FDAARGOS_158 chromosome, complete genome',\n", |
||
| 1875 | " 'NZ_CP014268.2 Escherichia coli B strain C2566, complete genome',\n", |
||
| 1876 | " 'NZ_CP014269.1 Escherichia coli B strain C3029, complete genome',\n", |
||
| 1877 | " 'NZ_CP014270.1 Escherichia coli K-12 strain DHB4, complete genome',\n", |
||
| 1878 | " 'NZ_CP014271.1 Escherichia coli K-12 strain DHB4 plasmid F128-(DHB4), complete sequence',\n", |
||
| 1879 | " 'NZ_CP014272.1 Escherichia coli K-12 strain C3026, complete genome',\n", |
||
| 1880 | " 'NZ_CP014273.1 Escherichia coli K-12 strain C3026 plasmid F128-(C3026), complete sequence',\n", |
||
| 1881 | " 'NZ_CP014326.1 Streptococcus mitis strain SVGS_061, complete genome',\n", |
||
| 1882 | " 'NZ_CP014223.1 [Clostridium] propionicum DSM 1682, complete genome',\n", |
||
| 1883 | " 'NZ_CP014279.1 Corynebacterium stationis strain ATCC 6872, complete genome',\n", |
||
| 1884 | " 'NZ_CP013926.1 Alteromonas stellipolaris strain LMG 21861, complete genome',\n", |
||
| 1885 | " 'NZ_CP013927.1 Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence',\n", |
||
| 1886 | " 'NZ_CP013932.1 Alteromonas sp. Mac1, complete genome',\n", |
||
| 1887 | " 'NZ_CP014322.1 Alteromonas addita strain R10SW13, complete genome',\n", |
||
| 1888 | " 'NZ_CP014274.1 Stenotrophomonas sp. KCTC 12332, complete genome',\n", |
||
| 1889 | " 'NZ_CP014323.1 Alteromonas macleodii strain D7, complete genome',\n", |
||
| 1890 | " 'NZ_CP014301.1 Bosea sp. PAMC 26642, complete genome',\n", |
||
| 1891 | " 'NZ_CP014302.1 Bosea sp. PAMC 26642 plasmid, complete sequence',\n", |
||
| 1892 | " 'NZ_CP014304.1 Hymenobacter sp. PAMC26628, complete genome',\n", |
||
| 1893 | " 'NZ_CP014303.1 Hymenobacter sp. PAMC26628 plasmid, complete sequence',\n", |
||
| 1894 | " 'NZ_CP013928.1 Alteromonas mediterranea strain UM8, complete genome',\n", |
||
| 1895 | " 'NZ_CP013929.1 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence',\n", |
||
| 1896 | " 'NZ_CP014206.1 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome',\n", |
||
| 1897 | " 'NZ_CP005083.1 Sphingobium sp. TKS chromosome 1, complete sequence',\n", |
||
| 1898 | " 'NZ_CP005084.1 Sphingobium sp. TKS chromosome 2, complete sequence',\n", |
||
| 1899 | " 'NZ_CP005085.1 Sphingobium sp. TKS plasmid pTK1, complete sequence',\n", |
||
| 1900 | " 'NZ_CP005086.1 Sphingobium sp. TKS plasmid pTK2, complete sequence',\n", |
||
| 1901 | " 'NZ_CP005087.1 Sphingobium sp. TKS plasmid pTK3, complete sequence',\n", |
||
| 1902 | " 'NZ_CP005088.1 Sphingobium sp. TKS plasmid pTK4, complete sequence',\n", |
||
| 1903 | " 'NZ_CP005090.1 Sphingobium sp. TKS plasmid pTK6, complete sequence',\n", |
||
| 1904 | " 'NZ_CP005091.1 Sphingobium sp. TKS plasmid pTK7, complete sequence',\n", |
||
| 1905 | " 'NZ_CP005092.1 Sphingobium sp. TKS plasmid pTK8, complete sequence',\n", |
||
| 1906 | " 'NZ_CP005093.1 Sphingobium sp. TKS plasmid pTK9, complete sequence',\n", |
||
| 1907 | " 'NZ_CP005089.1 Sphingobium sp. TKS plasmid pTK5, complete sequence',\n", |
||
| 1908 | " 'NZ_CP005188.1 Sphingobium sp. MI1205 chromosome 1, complete sequence',\n", |
||
| 1909 | " 'NZ_CP005189.1 Sphingobium sp. MI1205 chromosome 2, complete sequence',\n", |
||
| 1910 | " 'NZ_CP005190.1 Sphingobium sp. MI1205 plasmid pMI1, complete sequence',\n", |
||
| 1911 | " 'NZ_CP005191.1 Sphingobium sp. MI1205 plasmid pMI2, complete sequence',\n", |
||
| 1912 | " 'NZ_CP005192.1 Sphingobium sp. MI1205 plasmid pMI3, complete sequence',\n", |
||
| 1913 | " 'NZ_CP005193.1 Sphingobium sp. MI1205 plasmid pMI4, complete sequence',\n", |
||
| 1914 | " 'NZ_CP014004.1 Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835, complete genome',\n", |
||
| 1915 | " 'NZ_CP014005.1 Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835 plasmid unnamed1, complete sequence',\n", |
||
| 1916 | " 'NZ_CP014006.1 Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835 plasmid unnamed2, complete sequence',\n", |
||
| 1917 | " 'NZ_CP013357.1 Burkholderia oklahomensis EO147 chromosome 1, complete sequence',\n", |
||
| 1918 | " 'NZ_CP013356.1 Burkholderia oklahomensis EO147 chromosome 2, complete sequence',\n", |
||
| 1919 | " 'NZ_CP013358.1 Burkholderia oklahomensis C6786 chromosome 1, complete sequence',\n", |
||
| 1920 | " 'NZ_CP013359.1 Burkholderia oklahomensis C6786 chromosome 2, complete sequence',\n", |
||
| 1921 | " 'NZ_CP013373.1 Burkholderia sp. NRF60-BP8 chromosome 1, complete sequence',\n", |
||
| 1922 | " 'NZ_CP013372.1 Burkholderia sp. NRF60-BP8 chromosome 2, complete sequence',\n", |
||
| 1923 | " 'NZ_CP013374.1 Burkholderia sp. NRF60-BP8 chromosome 3, complete sequence',\n", |
||
| 1924 | " 'NZ_CP013389.1 Burkholderia sp. BDU8 chromosome 1, complete sequence',\n", |
||
| 1925 | " 'NZ_CP013388.1 Burkholderia sp. BDU8 chromosome 2, complete sequence',\n", |
||
| 1926 | " 'NZ_CP013386.1 Burkholderia sp. BDU6 chromosome 1, complete sequence',\n", |
||
| 1927 | " 'NZ_CP013387.1 Burkholderia sp. BDU6 chromosome 2, complete sequence',\n", |
||
| 1928 | " 'NZ_CP013384.1 Burkholderia sp. LA-2-3-30-S1-D2 chromosome 1, complete sequence',\n", |
||
| 1929 | " 'NZ_CP013383.1 Burkholderia sp. LA-2-3-30-S1-D2 chromosome 2, complete sequence',\n", |
||
| 1930 | " 'NZ_CP013385.1 Burkholderia sp. LA-2-3-30-S1-D2 chromosome 3, complete sequence',\n", |
||
| 1931 | " 'NZ_CP013417.1 Burkholderia sp. MSMB0266 chromosome 1, complete sequence',\n", |
||
| 1932 | " 'NZ_CP013418.1 Burkholderia sp. MSMB0266 chromosome 2, complete sequence',\n", |
||
| 1933 | " 'NZ_CP013419.1 Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence',\n", |
||
| 1934 | " 'NZ_CP013424.1 Burkholderia sp. MSMB0852 chromosome 1, complete sequence',\n", |
||
| 1935 | " 'NZ_CP013425.1 Burkholderia sp. MSMB0852 chromosome 2, complete sequence',\n", |
||
| 1936 | " 'NZ_CP013423.1 Burkholderia sp. MSMB0852 plasmid pMSMB0852, complete sequence',\n", |
||
| 1937 | " 'NZ_CP013427.1 Burkholderia sp. MSMB0856 chromosome 1, complete sequence',\n", |
||
| 1938 | " 'NZ_CP013428.1 Burkholderia sp. MSMB0856 chromosome 2, complete sequence',\n", |
||
| 1939 | " 'NZ_CP013429.1 Burkholderia sp. MSMB0856 chromosome 3, complete sequence',\n", |
||
| 1940 | " 'NZ_CP013426.1 Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence',\n", |
||
| 1941 | " 'NZ_CP014010.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF999, complete genome',\n", |
||
| 1942 | " 'NZ_CP014011.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF999 plasmid pRJF999, complete sequence',\n", |
||
| 1943 | " 'NZ_CP014008.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF293, complete genome',\n", |
||
| 1944 | " 'NZ_CP014009.1 Klebsiella pneumoniae subsp. pneumoniae strain RJF293 plasmid pRJF293, complete sequence',\n", |
||
| 1945 | " 'NZ_CP013457.1 Burkholderia sp. MSMB617WGS chromosome 1, complete sequence',\n", |
||
| 1946 | " 'NZ_CP013458.1 Burkholderia sp. MSMB617WGS chromosome 2, complete sequence',\n", |
||
| 1947 | " 'NZ_CP013992.1 Flavobacterium columnare strain 94-081, complete genome',\n", |
||
| 1948 | " 'NZ_CP013920.1 Arsenophonus symbiont of Lipoptena fortisetosa strain CB, complete genome',\n", |
||
| 1949 | " 'NZ_CP013975.1 Piscirickettsia salmonis strain CGR02, complete genome',\n", |
||
| 1950 | " 'NZ_CP013976.1 Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-1, complete sequence',\n", |
||
| 1951 | " 'NZ_CP013977.1 Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-2, complete sequence',\n", |
||
| 1952 | " 'NZ_CP013978.1 Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-4, complete sequence',\n", |
||
| 1953 | " 'NZ_CP013997.1 Pseudomonas monteilii strain USDA-ARS-USMARC-56711, complete genome',\n", |
||
| 1954 | " 'NC_022998.1 Spiroplasma apis B31, complete genome',\n", |
||
| 1955 | " 'NC_023037.2 Paenibacillus polymyxa CR1, complete genome',\n", |
||
| 1956 | " 'NZ_CP006579.1 Aeromonas hydrophila 4AK4, complete genome',\n", |
||
| 1957 | " 'NZ_CP006859.1 Listeria monocytogenes serotype 1/2a str. 08-6997, complete genome',\n", |
||
| 1958 | " 'NZ_CP003915.1 Advenella mimigardefordensis DPN7, complete genome',\n", |
||
| 1959 | " 'NZ_CP003916.1 Advenella mimigardefordensis DPN7 plasmid 24p, complete sequence',\n", |
||
| 1960 | " 'NZ_CP007128.1 Gemmatirosa kalamazoonesis strain KBS708, complete genome',\n", |
||
| 1961 | " 'NZ_CP007129.1 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence',\n", |
||
| 1962 | " 'NZ_CP007127.1 Gemmatirosa kalamazoonesis strain KBS708 phage-like extrachromosal element, complete sequence',\n", |
||
| 1963 | " 'NZ_CP007130.1 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence',\n", |
||
| 1964 | " 'NZ_CP006720.1 Spiroplasma mirum ATCC 29335 strain SMCA, complete genome',\n", |
||
| 1965 | " 'NZ_CP006715.1 Bifidobacterium breve 689b, complete genome',\n", |
||
| 1966 | " 'NZ_CP007230.1 Yersinia similis strain 228, complete genome',\n", |
||
| 1967 | " 'NZ_CP007231.1 Yersinia similis strain 228 plasmid, complete sequence',\n", |
||
| 1968 | " 'NC_022107.1 Chlamydia trachomatis F/11-96, complete genome',\n", |
||
| 1969 | " 'NZ_CP007446.1 Snodgrassella alvi wkB2, complete genome',\n", |
||
| 1970 | " 'NZ_CP012371.1 Nitrosospira briensis C-128, complete genome',\n", |
||
| 1971 | " 'NZ_CP010493.1 Campylobacter jejuni strain CJ677CC062, complete genome',\n", |
||
| 1972 | " 'NZ_CP010494.1 Campylobacter jejuni strain CJ677CC059, complete genome',\n", |
||
| 1973 | " 'NZ_CP010496.1 Campylobacter jejuni strain CJ677CC032, complete genome',\n", |
||
| 1974 | " 'NZ_CP010497.1 Campylobacter jejuni strain CJ677CC033, complete genome',\n", |
||
| 1975 | " 'NZ_CP010498.1 Campylobacter jejuni strain CJ677CC537, complete genome',\n", |
||
| 1976 | " 'NZ_CP010499.1 Campylobacter jejuni strain CJ677CC542, complete genome',\n", |
||
| 1977 | " 'NZ_CP010500.1 Campylobacter jejuni strain CJ677CC528, complete genome',\n", |
||
| 1978 | " 'NZ_CP010495.1 Campylobacter jejuni strain CJ677CC538, complete genome',\n", |
||
| 1979 | " 'NZ_CP010501.1 Campylobacter jejuni strain CJ677CC520, complete genome',\n", |
||
| 1980 | " 'NZ_CP010502.1 Campylobacter jejuni strain CJ677CC014, complete genome',\n", |
||
| 1981 | " 'NZ_CP010503.1 Campylobacter jejuni strain CJ677CC039, complete genome',\n", |
||
| 1982 | " 'NZ_CP010504.1 Campylobacter jejuni strain CJ677CC085, complete genome',\n", |
||
| 1983 | " 'NZ_CP010505.1 Campylobacter jejuni strain CJ677CC052, complete genome',\n", |
||
| 1984 | " 'NZ_CP010506.1 Campylobacter jejuni strain CJ677CC527, complete genome',\n", |
||
| 1985 | " 'NZ_CP010507.1 Campylobacter jejuni strain CJ677CC078, complete genome',\n", |
||
| 1986 | " 'NZ_CP010508.1 Campylobacter jejuni strain CJ677CC523, complete genome',\n", |
||
| 1987 | " 'NZ_CP010509.1 Campylobacter jejuni strain CJ677CC540, complete genome',\n", |
||
| 1988 | " 'NZ_CP010510.1 Campylobacter jejuni strain CJ677CC040, complete genome',\n", |
||
| 1989 | " 'NZ_CP010511.1 Campylobacter jejuni strain CJ677CC061, complete genome',\n", |
||
| 1990 | " 'NZ_CP010457.1 Campylobacter jejuni strain CJ677CC539, complete genome',\n", |
||
| 1991 | " 'NZ_CP010458.1 Campylobacter jejuni strain CJ677CC533, complete genome',\n", |
||
| 1992 | " 'NZ_CP010459.1 Campylobacter jejuni strain CJ677CC047, complete genome',\n", |
||
| 1993 | " 'NZ_CP009802.1 Streptomyces sp. FR-008, complete genome',\n", |
||
| 1994 | " 'NZ_CP009803.1 Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence',\n", |
||
| 1995 | " 'NZ_CP009804.1 Streptomyces sp. FR-008 plasmid pSSFR2, complete sequence',\n", |
||
| 1996 | " 'NZ_CP012482.1 Bacillus cellulasensis strain NJ-V2, complete genome',\n", |
||
| 1997 | " 'NZ_CP013114.1 Staphylococcus equorum strain KS1039, complete genome',\n", |
||
| 1998 | " 'NZ_CP009847.1 Vibrio parahaemolyticus strain FORC_004 chromosome 1, complete sequence',\n", |
||
| 1999 | " 'NZ_CP009848.1 Vibrio parahaemolyticus strain FORC_004 chromosome 2, complete sequence',\n", |
||
| 2000 | " 'NZ_CP009849.1 Vibrio parahaemolyticus strain FORC_004 plasmid pFORC4, complete sequence',\n", |
||
| 2001 | " 'NZ_CP009984.1 Vibrio vulnificus strain FORC_009 chromosome 1, complete sequence',\n", |
||
| 2002 | " 'NZ_CP009985.1 Vibrio vulnificus strain FORC_009 chromosome 2, complete sequence',\n", |
||
| 2003 | " 'NZ_CP012837.1 Corynebacterium pseudotuberculosis strain 1002B, complete genome',\n", |
||
| 2004 | " 'NZ_CP012907.1 Helicobacter pylori strain 29CaP, complete genome',\n", |
||
| 2005 | " 'NZ_CP012905.1 Helicobacter pylori strain 7C, complete sequence',\n", |
||
| 2006 | " 'NZ_CP012906.1 Helicobacter pylori strain 7C plasmid, complete sequence',\n", |
||
| 2007 | " 'NZ_CP013120.1 Alteromonas stellipolaris LMG 21856, complete genome',\n", |
||
| 2008 | " 'NZ_CP013121.1 Fusobacterium nucleatum subsp. polymorphum strain ChDC F306, complete genome',\n", |
||
| 2009 | " 'NZ_CP013122.1 Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed1, complete sequence',\n", |
||
| 2010 | " 'NZ_CP013123.1 Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed2, complete sequence',\n", |
||
| 2011 | " 'NZ_CP014140.1 Aneurinibacillus sp. XH2, complete genome',\n", |
||
| 2012 | " 'NZ_CP013126.1 Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome',\n", |
||
| 2013 | " 'NZ_CP012921.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701, complete genome',\n", |
||
| 2014 | " 'NZ_CP012922.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 plasmid pSA02DT10168701_37, complete sequence',\n", |
||
| 2015 | " 'NZ_CP012923.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 plasmid pSA02DT10168701_99, complete sequence',\n", |
||
| 2016 | " 'NZ_CP012924.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374, complete genome',\n", |
||
| 2017 | " 'NZ_CP012925.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_2, complete sequence',\n", |
||
| 2018 | " 'NZ_CP012927.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_3, complete sequence',\n", |
||
| 2019 | " 'NZ_CP012926.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_37, complete sequence',\n", |
||
| 2020 | " 'NZ_CP012928.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_62, complete sequence',\n", |
||
| 2021 | " 'NZ_CP012929.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_96, complete sequence',\n", |
||
| 2022 | " 'NZ_CP012930.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290, complete genome',\n", |
||
| 2023 | " 'NZ_CP012932.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_2, complete sequence',\n", |
||
| 2024 | " 'NZ_CP012931.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence',\n", |
||
| 2025 | " 'NZ_CP012933.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_3-1, complete sequence',\n", |
||
| 2026 | " 'NZ_CP012934.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_3-2, complete sequence',\n", |
||
| 2027 | " 'NZ_CP012935.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_3-3, complete sequence',\n", |
||
| 2028 | " 'NZ_CP012936.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_98, complete sequence',\n", |
||
| 2029 | " 'NZ_CP013133.1 Rickettsia rhipicephali strain HJ#5, complete genome',\n", |
||
| 2030 | " 'NZ_CP013134.1 Rickettsia rhipicephali strain HJ#5 plasmid pHJ51, complete sequence',\n", |
||
| 2031 | " 'NZ_CP013135.1 Rickettsia rhipicephali strain HJ#5 plasmid pHJ52 sequence',\n", |
||
| 2032 | " 'NZ_CP013112.1 Escherichia coli strain YD786, complete genome',\n", |
||
| 2033 | " 'NZ_CP013141.1 Lysobacter antibioticus strain ATCC 29479 genome',\n", |
||
| 2034 | " 'NZ_CP011129.1 Lysobacter antibioticus strain 76, complete genome',\n", |
||
| 2035 | " 'NZ_CP012096.1 Serratia plymuthica strain 3Rp8, complete genome',\n", |
||
| 2036 | " 'NZ_CP012097.1 Serratia plymuthica strain 3Re4-18, complete genome',\n", |
||
| 2037 | " 'NZ_CP015963.1 Altererythrobacter ishigakiensis strain NBRC 107699 chromosome, complete genome',\n", |
||
| 2038 | " 'NZ_CP016033.1 Porphyrobacter neustonensis strain DSM 9434, complete genome',\n", |
||
| 2039 | " 'NZ_CP015990.1 Klebsiella pneumoniae strain BR chromosome, complete genome',\n", |
||
| 2040 | " 'NZ_CP015991.1 Klebsiella pneumoniae strain BR plasmid pWSZBR, complete sequence',\n", |
||
| 2041 | " 'NZ_CP014762.1 Klebsiella pneumoniae strain KPNIH39, complete genome',\n", |
||
| 2042 | " 'NZ_CP014763.1 Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence',\n", |
||
| 2043 | " 'NZ_CP014764.1 Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-704, complete sequence',\n", |
||
| 2044 | " 'NZ_CP014765.1 Klebsiella pneumoniae strain KPNIH39 plasmid pKpQIL-9b8, complete sequence',\n", |
||
| 2045 | " 'NZ_CP012968.1 Staphylococcus sp. AntiMn-1, complete genome',\n", |
||
| 2046 | " 'NZ_CP013300.1 Staphylococcus sp. AntiMn-1 plasmid AM1_232, complete sequence',\n", |
||
| 2047 | " 'NZ_CP015850.1 Ralstonia solanacearum strain YC40-M chromosome, complete genome',\n", |
||
| 2048 | " 'NZ_CP015851.1 Ralstonia solanacearum strain YC40-M plasmid, complete sequence',\n", |
||
| 2049 | " 'NZ_CP015025.1 Klebsiella pneumoniae strain Kpn223, complete genome',\n", |
||
| 2050 | " 'NZ_CP015026.1 Klebsiella pneumoniae strain Kpn223 plasmid pKPN-065, complete sequence',\n", |
||
| 2051 | " 'NZ_CP015130.1 Klebsiella pneumoniae strain Kpn555 chromosome, complete genome',\n", |
||
| 2052 | " 'NZ_CP015131.1 Klebsiella pneumoniae strain Kpn555 plasmid pKPN-7c3, complete sequence',\n", |
||
| 2053 | " 'NZ_CP015133.1 Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d6b, complete sequence',\n", |
||
| 2054 | " 'NZ_CP015132.1 Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d90, complete sequence',\n", |
||
| 2055 | " 'NZ_CP015159.1 Escherichia coli strain Eco889 chromosome, complete genome',\n", |
||
| 2056 | " 'NZ_CP015161.1 Escherichia coli strain Eco889 plasmid pECO-93a, complete sequence',\n", |
||
| 2057 | " 'NZ_CP015160.1 Escherichia coli strain Eco889 plasmid pECO-fce, complete sequence',\n", |
||
| 2058 | " 'NZ_CP015309.1 Corynebacterium pseudotuberculosis strain PA02 chromosome, complete genome',\n", |
||
| 2059 | " 'NZ_CP014623.1 Lactobacillus backii strain TMW 1.1988 chromosome, complete genome',\n", |
||
| 2060 | " 'NZ_CP014624.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-1, complete sequence',\n", |
||
| 2061 | " 'NZ_CP014625.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-10, complete sequence',\n", |
||
| 2062 | " 'NZ_CP014626.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-2, complete sequence',\n", |
||
| 2063 | " 'NZ_CP014627.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-3, complete sequence',\n", |
||
| 2064 | " 'NZ_CP014628.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-4, complete sequence',\n", |
||
| 2065 | " 'NZ_CP014629.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-5, complete sequence',\n", |
||
| 2066 | " 'NZ_CP014630.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-6, complete sequence',\n", |
||
| 2067 | " 'NZ_CP014631.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-7, complete sequence',\n", |
||
| 2068 | " 'NZ_CP014632.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-8, complete sequence',\n", |
||
| 2069 | " 'NZ_CP014633.1 Lactobacillus backii strain TMW 1.1988 plasmid L11988-9, complete sequence',\n", |
||
| 2070 | " 'NZ_CP012969.1 Psychrobacter sp. AntiMn-1, complete genome',\n", |
||
| 2071 | " 'NZ_CP013101.1 Clostridium perfringens strain FORC_025, complete genome',\n", |
||
| 2072 | " 'NZ_CP017715.1 Marinobacter salinus strain Hb8 chromosome, complete genome',\n", |
||
| 2073 | " 'NZ_CP017188.2 Xanthomonas citri pv. glycines str. 8ra chromosome, complete genome',\n", |
||
| 2074 | " 'NZ_CP017189.2 Xanthomonas citri pv. glycines str. 8ra plasmid pXAG27.8ra, complete sequence',\n", |
||
| 2075 | " 'NZ_CP017190.1 Xanthomonas campestris pv. vesicatoria str. 85-10, complete sequence',\n", |
||
| 2076 | " 'NZ_CP017191.1 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence',\n", |
||
| 2077 | " 'NZ_CP017192.1 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_2, complete sequence',\n", |
||
| 2078 | " 'NZ_CP017193.1 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_3, complete sequence',\n", |
||
| 2079 | " 'NZ_CP017603.1 Clostridium formicaceticum strain ATCC 27076, complete genome',\n", |
||
| 2080 | " 'NZ_CP015208.1 Candidatus Rhodoluna planktonica strain MWH-Dar1, complete genome',\n", |
||
| 2081 | " 'NZ_CP015381.1 Desulfococcus multivorans strain DSM 2059, complete genome',\n", |
||
| 2082 | " 'NZ_CP017751.1 Cupriavidus sp. USMAHM13 chromosome 1, complete sequence',\n", |
||
| 2083 | " 'NZ_CP017752.1 Cupriavidus sp. USMAHM13 chromosome 2, complete sequence',\n", |
||
| 2084 | " 'NZ_CP017753.1 Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence',\n", |
||
| 2085 | " 'NZ_CP017748.1 Cupriavidus sp. USMAA2-4 chromosome 1, complete sequence',\n", |
||
| 2086 | " 'NZ_CP017749.1 Cupriavidus sp. USMAA2-4 chromosome 2, complete sequence',\n", |
||
| 2087 | " 'NZ_CP017750.1 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence',\n", |
||
| 2088 | " 'NZ_CP017754.1 Cupriavidus sp. USMAA1020 chromosome 1, complete sequence',\n", |
||
| 2089 | " 'NZ_CP017755.1 Cupriavidus sp. USMAA1020 chromosome 2, complete sequence',\n", |
||
| 2090 | " 'NZ_CP017756.1 Cupriavidus sp. USMAA1020 plasmid unnamed1, complete sequence',\n", |
||
| 2091 | " 'NZ_CP017747.1 Bacillus velezensis strain SYBC H47 chromosome, complete genome',\n", |
||
| 2092 | " 'NZ_CP017421.1 Arthrobacter sp. ZXY-2 chromosome, complete genome',\n", |
||
| 2093 | " 'NZ_CP017422.1 Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence',\n", |
||
| 2094 | " 'NZ_CP017423.1 Arthrobacter sp. ZXY-2 plasmid pZXY22, complete sequence',\n", |
||
| 2095 | " 'NZ_CP017424.1 Arthrobacter sp. ZXY-2 plasmid pZXY23, complete sequence',\n", |
||
| 2096 | " 'NZ_CP017425.1 Arthrobacter sp. ZXY-2 plasmid pZXY24, complete sequence',\n", |
||
| 2097 | " 'NZ_CP017426.1 Arthrobacter sp. ZXY-2 plasmid pZXY25, complete sequence',\n", |
||
| 2098 | " 'NZ_CP017640.1 Methylobacterium sp. C1 chromosome, complete genome',\n", |
||
| 2099 | " 'NZ_CP017718.1 Hyphomonas sp. Mor2 genome',\n", |
||
| 2100 | " 'NZ_CP013013.1 Vibrio cholerae strain Env-390 chromosome 1, complete sequence',\n", |
||
| 2101 | " 'NZ_CP013014.1 Vibrio cholerae strain Env-390 chromosome 2, complete sequence',\n", |
||
| 2102 | " 'NZ_CP013475.1 Mycobacterium tuberculosis strain 1458, complete genome',\n", |
||
| 2103 | " 'NZ_CP017707.1 Chromobacterium vaccinii strain 21-1 chromosome, complete genome',\n", |
||
| 2104 | " 'NZ_CP017622.1 Ketogulonicigenium vulgare strain SPU B805 chromosome, complete genome',\n", |
||
| 2105 | " 'NZ_CP012426.1 Klebsiella pneumoniae strain KP5 chromosome, complete genome',\n", |
||
| 2106 | " 'NZ_CP012427.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-1, complete sequence',\n", |
||
| 2107 | " 'NZ_CP012428.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence',\n", |
||
| 2108 | " 'NZ_CP012429.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-3, complete sequence',\n", |
||
| 2109 | " 'NZ_CP011839.1 Klebsiella pneumoniae strain KP5 plasmid pSg1-NDM, complete sequence',\n", |
||
| 2110 | " 'NZ_CP017100.1 Escherichia coli strain K-12 NEB 5-alpha chromosome, complete genome',\n", |
||
| 2111 | " 'NZ_CP017107.1 Lactobacillus salivarius strain CICC 23174 chromosome, complete genome',\n", |
||
| 2112 | " 'NZ_CP017108.1 Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence',\n", |
||
| 2113 | " 'NZ_CP017109.1 Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence',\n", |
||
| 2114 | " 'NZ_CP017110.1 Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence',\n", |
||
| 2115 | " 'NZ_CP017124.1 Lactobacillus curvatus strain WiKim38, complete genome',\n", |
||
| 2116 | " 'NZ_CP016395.1 Bacillus velezensis strain M75 chromosome, complete genome',\n", |
||
| 2117 | " 'NZ_CP017111.1 Sulfurospirillum halorespirans DSM 13726 chromosome, complete genome',\n", |
||
| 2118 | " 'NZ_CP017116.1 Erysipelothrix rhusiopathiae strain WH13013 chromosome, complete genome',\n", |
||
| 2119 | " 'NZ_CP012692.1 Staphylococcus aureus strain FORC_027, complete genome',\n", |
||
| 2120 | " 'NZ_CP016019.1 Bifidobacterium longum subsp. longum strain AH1206, complete genome',\n", |
||
| 2121 | " 'NZ_CP017247.1 Bacillus licheniformis strain BL1202, complete genome',\n", |
||
| 2122 | " 'NZ_CP016385.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931, complete genome',\n", |
||
| 2123 | " 'NZ_CP016386.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid p931-3904, complete sequence',\n", |
||
| 2124 | " 'NZ_CP016387.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid p931IncI1, complete sequence',\n", |
||
| 2125 | " 'NZ_CP016388.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid p931IncI2, complete sequence',\n", |
||
| 2126 | " 'NZ_CP016389.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid pESBL931, complete sequence',\n", |
||
| 2127 | " 'NZ_CP016390.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 13-931 plasmid pSLT931, complete sequence',\n", |
||
| 2128 | " 'NZ_CP015217.1 Leptospira alstonii strain GWTS #1 chromosome 1, complete sequence',\n", |
||
| 2129 | " 'NZ_CP015218.1 Leptospira alstonii strain GWTS #1 chromosome 2, complete sequence',\n", |
||
| 2130 | " 'NZ_CP016044.1 Edwardsiella piscicida strain S11-285 chromosome, complete genome',\n", |
||
| 2131 | " 'NZ_CP016445.1 Edwardsiella piscicida strain S11-285 plasmid unnamed1, complete sequence',\n", |
||
| 2132 | " 'NZ_CP017157.1 Streptomyces lydicus strain 103 chromosome, complete genome',\n", |
||
| 2133 | " 'NZ_CP017149.1 Pseudomonas aeruginosa strain ATCC 15692 chromosome, complete genome',\n", |
||
| 2134 | " 'NZ_CP017150.1 Brevibacterium aurantiacum strain SMQ-1335 chromosome, complete genome',\n", |
||
| 2135 | " 'NZ_CP017175.1 Burkholderia mallei strain Bahrain1 chromosome 1, complete sequence',\n", |
||
| 2136 | " 'NZ_CP017176.1 Burkholderia mallei strain Bahrain1 chromosome 2, complete sequence',\n", |
||
| 2137 | " 'NZ_CP016894.1 Bacillus subtilis strain HJ0-6, complete genome',\n", |
||
| 2138 | " 'NZ_CP016895.1 Acinetobacter larvae strain BRTC-1 chromosome, complete genome',\n", |
||
| 2139 | " 'NZ_CP016294.1 Stenotrophomonas rhizophila strain QL-P4, complete genome',\n", |
||
| 2140 | " 'NZ_CP016824.1 Streptomyces sampsonii strain KJ40 chromosome, complete genome',\n", |
||
| 2141 | " 'NZ_CP016341.1 Bordetella holmesii strain H903, complete genome',\n", |
||
| 2142 | " 'NZ_CP016811.1 Klebsiella pneumoniae strain DHQP1002001 chromosome, complete genome',\n", |
||
| 2143 | " 'NZ_CP016810.1 Klebsiella pneumoniae strain DHQP1002001 plasmid p_IncFIB_DHQP1002001, complete sequence',\n", |
||
| 2144 | " 'NZ_CP016812.1 Klebsiella pneumoniae strain DHQP1002001 plasmid p_incR_DHQP1002001, complete sequence',\n", |
||
| 2145 | " 'NZ_CP016342.1 Bordetella parapertussis strain H904, complete genome',\n", |
||
| 2146 | " 'NZ_CP011533.1 Streptomyces noursei ATCC 11455, complete genome',\n", |
||
| 2147 | " 'NZ_CP012334.1 Bordetella sp. H567, complete genome',\n", |
||
| 2148 | " 'NZ_CP013749.1 Lactobacillus plantarum strain KP, complete genome',\n", |
||
| 2149 | " 'NZ_CP013750.1 Lactobacillus plantarum strain KP plasmid unnamed1, complete sequence',\n", |
||
| 2150 | " 'NZ_CP013751.1 Lactobacillus plantarum strain KP plasmid unnamed2, complete sequence',\n", |
||
| 2151 | " 'NZ_CP013752.1 Lactobacillus plantarum strain KP plasmid unnamed3, complete sequence',\n", |
||
| 2152 | " 'NZ_CP013753.1 Lactobacillus plantarum strain DF, complete genome',\n", |
||
| 2153 | " 'NZ_CP013754.1 Lactobacillus plantarum strain DF plasmid unnamed1, complete sequence',\n", |
||
| 2154 | " 'NZ_CP013755.1 Lactobacillus plantarum strain DF plasmid unnamed2, complete sequence',\n", |
||
| 2155 | " 'NZ_CP013756.1 Lactobacillus plantarum strain DF plasmid unnamed3, complete sequence',\n", |
||
| 2156 | " 'NZ_CP016431.1 Bordetella bronchiseptica strain I328 chromosome, complete genome',\n", |
||
| 2157 | " 'NZ_CP029397.1 Acinetobacter defluvii strain WCHA30 chromosome, complete genome',\n", |
||
| 2158 | " 'NZ_CP029389.1 Acinetobacter defluvii strain WCHA30 plasmid p1_010030, complete sequence',\n", |
||
| 2159 | " 'NZ_CP029390.1 Acinetobacter defluvii strain WCHA30 plasmid p2_010030, complete sequence',\n", |
||
| 2160 | " 'NZ_CP029391.1 Acinetobacter defluvii strain WCHA30 plasmid p3_010030, complete sequence',\n", |
||
| 2161 | " 'NZ_CP029392.1 Acinetobacter defluvii strain WCHA30 plasmid p4_010030, complete sequence',\n", |
||
| 2162 | " 'NZ_CP029393.1 Acinetobacter defluvii strain WCHA30 plasmid p5_010030, complete sequence',\n", |
||
| 2163 | " 'NZ_CP029394.1 Acinetobacter defluvii strain WCHA30 plasmid p6_010030, complete sequence',\n", |
||
| 2164 | " 'NZ_CP029395.1 Acinetobacter defluvii strain WCHA30 plasmid p7_010030, complete sequence',\n", |
||
| 2165 | " 'NZ_CP029396.1 Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence',\n", |
||
| 2166 | " 'NZ_CP012375.1 Microcystis aeruginosa NIES-2481, complete genome',\n", |
||
| 2167 | " 'NZ_CP025929.1 Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence',\n", |
||
| 2168 | " ...]" |
||
| 2169 | ] |
||
| 2170 | }, |
||
| 2171 | "execution_count": 25, |
||
| 2172 | "metadata": {}, |
||
| 2173 | "output_type": "execute_result" |
||
| 2174 | } |
||
| 2175 | ], |
||
| 2176 | "source": [ |
||
| 2177 | "all_fastas" |
||
| 2178 | ] |
||
| 2179 | }, |
||
| 2180 | { |
||
| 2181 | "cell_type": "code", |
||
| 2182 | "execution_count": 117, |
||
| 2183 | "metadata": {}, |
||
| 2184 | "outputs": [ |
||
| 2185 | { |
||
| 2186 | "data": { |
||
| 2187 | "text/html": [ |
||
| 2188 | "<div>\n", |
||
| 2189 | "<style scoped>\n", |
||
| 2190 | " .dataframe tbody tr th:only-of-type {\n", |
||
| 2191 | " vertical-align: middle;\n", |
||
| 2192 | " }\n", |
||
| 2193 | "\n", |
||
| 2194 | " .dataframe tbody tr th {\n", |
||
| 2195 | " vertical-align: top;\n", |
||
| 2196 | " }\n", |
||
| 2197 | "\n", |
||
| 2198 | " .dataframe thead th {\n", |
||
| 2199 | " text-align: right;\n", |
||
| 2200 | " }\n", |
||
| 2201 | "</style>\n", |
||
| 2202 | "<table border=\"1\" class=\"dataframe\">\n", |
||
| 2203 | " <thead>\n", |
||
| 2204 | " <tr style=\"text-align: right;\">\n", |
||
| 2205 | " <th></th>\n", |
||
| 2206 | " <th>n_sequences</th>\n", |
||
| 2207 | " <th>species</th>\n", |
||
| 2208 | " </tr>\n", |
||
| 2209 | " <tr>\n", |
||
| 2210 | " <th>genus</th>\n", |
||
| 2211 | " <th></th>\n", |
||
| 2212 | " <th></th>\n", |
||
| 2213 | " </tr>\n", |
||
| 2214 | " </thead>\n", |
||
| 2215 | " <tbody>\n", |
||
| 2216 | " <tr>\n", |
||
| 2217 | " <th>Bacillus</th>\n", |
||
| 2218 | " <td>1132</td>\n", |
||
| 2219 | " <td>11</td>\n", |
||
| 2220 | " </tr>\n", |
||
| 2221 | " <tr>\n", |
||
| 2222 | " <th>Streptomyces</th>\n", |
||
| 2223 | " <td>743</td>\n", |
||
| 2224 | " <td>5</td>\n", |
||
| 2225 | " </tr>\n", |
||
| 2226 | " <tr>\n", |
||
| 2227 | " <th>Vibrio</th>\n", |
||
| 2228 | " <td>468</td>\n", |
||
| 2229 | " <td>5</td>\n", |
||
| 2230 | " </tr>\n", |
||
| 2231 | " <tr>\n", |
||
| 2232 | " <th>Rhizobium</th>\n", |
||
| 2233 | " <td>325</td>\n", |
||
| 2234 | " <td>6</td>\n", |
||
| 2235 | " </tr>\n", |
||
| 2236 | " <tr>\n", |
||
| 2237 | " <th>Pseudomonas</th>\n", |
||
| 2238 | " <td>304</td>\n", |
||
| 2239 | " <td>8</td>\n", |
||
| 2240 | " </tr>\n", |
||
| 2241 | " <tr>\n", |
||
| 2242 | " <th>Staphylococcus</th>\n", |
||
| 2243 | " <td>301</td>\n", |
||
| 2244 | " <td>6</td>\n", |
||
| 2245 | " </tr>\n", |
||
| 2246 | " <tr>\n", |
||
| 2247 | " <th>Clostridium</th>\n", |
||
| 2248 | " <td>259</td>\n", |
||
| 2249 | " <td>5</td>\n", |
||
| 2250 | " </tr>\n", |
||
| 2251 | " <tr>\n", |
||
| 2252 | " <th>Streptococcus</th>\n", |
||
| 2253 | " <td>222</td>\n", |
||
| 2254 | " <td>6</td>\n", |
||
| 2255 | " </tr>\n", |
||
| 2256 | " <tr>\n", |
||
| 2257 | " <th>Planktothrix</th>\n", |
||
| 2258 | " <td>179</td>\n", |
||
| 2259 | " <td>5</td>\n", |
||
| 2260 | " </tr>\n", |
||
| 2261 | " <tr>\n", |
||
| 2262 | " <th>Stenotrophomonas</th>\n", |
||
| 2263 | " <td>176</td>\n", |
||
| 2264 | " <td>5</td>\n", |
||
| 2265 | " </tr>\n", |
||
| 2266 | " <tr>\n", |
||
| 2267 | " <th>Escherichia</th>\n", |
||
| 2268 | " <td>133</td>\n", |
||
| 2269 | " <td>3</td>\n", |
||
| 2270 | " </tr>\n", |
||
| 2271 | " <tr>\n", |
||
| 2272 | " <th>Paenibacillus</th>\n", |
||
| 2273 | " <td>127</td>\n", |
||
| 2274 | " <td>3</td>\n", |
||
| 2275 | " </tr>\n", |
||
| 2276 | " <tr>\n", |
||
| 2277 | " <th>Listeria</th>\n", |
||
| 2278 | " <td>104</td>\n", |
||
| 2279 | " <td>4</td>\n", |
||
| 2280 | " </tr>\n", |
||
| 2281 | " <tr>\n", |
||
| 2282 | " <th>Corynebacterium</th>\n", |
||
| 2283 | " <td>103</td>\n", |
||
| 2284 | " <td>7</td>\n", |
||
| 2285 | " </tr>\n", |
||
| 2286 | " <tr>\n", |
||
| 2287 | " <th>Klebsiella</th>\n", |
||
| 2288 | " <td>16</td>\n", |
||
| 2289 | " <td>3</td>\n", |
||
| 2290 | " </tr>\n", |
||
| 2291 | " <tr>\n", |
||
| 2292 | " <th>Shigella</th>\n", |
||
| 2293 | " <td>14</td>\n", |
||
| 2294 | " <td>3</td>\n", |
||
| 2295 | " </tr>\n", |
||
| 2296 | " <tr>\n", |
||
| 2297 | " <th>Salmonella</th>\n", |
||
| 2298 | " <td>4</td>\n", |
||
| 2299 | " <td>2</td>\n", |
||
| 2300 | " </tr>\n", |
||
| 2301 | " <tr>\n", |
||
| 2302 | " <th>Enterobacter</th>\n", |
||
| 2303 | " <td>1</td>\n", |
||
| 2304 | " <td>1</td>\n", |
||
| 2305 | " </tr>\n", |
||
| 2306 | " </tbody>\n", |
||
| 2307 | "</table>\n", |
||
| 2308 | "</div>" |
||
| 2309 | ], |
||
| 2310 | "text/plain": [ |
||
| 2311 | " n_sequences species\n", |
||
| 2312 | "genus \n", |
||
| 2313 | "Bacillus 1132 11\n", |
||
| 2314 | "Streptomyces 743 5\n", |
||
| 2315 | "Vibrio 468 5\n", |
||
| 2316 | "Rhizobium 325 6\n", |
||
| 2317 | "Pseudomonas 304 8\n", |
||
| 2318 | "Staphylococcus 301 6\n", |
||
| 2319 | "Clostridium 259 5\n", |
||
| 2320 | "Streptococcus 222 6\n", |
||
| 2321 | "Planktothrix 179 5\n", |
||
| 2322 | "Stenotrophomonas 176 5\n", |
||
| 2323 | "Escherichia 133 3\n", |
||
| 2324 | "Paenibacillus 127 3\n", |
||
| 2325 | "Listeria 104 4\n", |
||
| 2326 | "Corynebacterium 103 7\n", |
||
| 2327 | "Klebsiella 16 3\n", |
||
| 2328 | "Shigella 14 3\n", |
||
| 2329 | "Salmonella 4 2\n", |
||
| 2330 | "Enterobacter 1 1" |
||
| 2331 | ] |
||
| 2332 | }, |
||
| 2333 | "execution_count": 117, |
||
| 2334 | "metadata": {}, |
||
| 2335 | "output_type": "execute_result" |
||
| 2336 | } |
||
| 2337 | ], |
||
| 2338 | "source": [ |
||
| 2339 | "counts = inventory.reset_index().groupby(\"genus\").agg({\"count\", sum}).drop((\"species\"), axis=1)\n", |
||
| 2340 | "counts.columns=[\"n_sequences\",\"species\"]\n", |
||
| 2341 | "counts.sort_values(\"n_sequences\", ascending=False)" |
||
| 2342 | ] |
||
| 2343 | }, |
||
| 2344 | { |
||
| 2345 | "cell_type": "code", |
||
| 2346 | "execution_count": null, |
||
| 2347 | "metadata": {}, |
||
| 2348 | "outputs": [], |
||
| 2349 | "source": [] |
||
| 2350 | } |
||
| 2351 | ], |
||
| 2352 | "metadata": { |
||
| 2353 | "kernelspec": { |
||
| 2354 | "display_name": "Python 3", |
||
| 2355 | "language": "python", |
||
| 2356 | "name": "python3" |
||
| 2357 | }, |
||
| 2358 | "language_info": { |
||
| 2359 | "codemirror_mode": { |
||
| 2360 | "name": "ipython", |
||
| 2361 | "version": 3 |
||
| 2362 | }, |
||
| 2363 | "file_extension": ".py", |
||
| 2364 | "mimetype": "text/x-python", |
||
| 2365 | "name": "python", |
||
| 2366 | "nbconvert_exporter": "python", |
||
| 2367 | "pygments_lexer": "ipython3", |
||
| 2368 | "version": "3.6.8" |
||
| 2369 | }, |
||
| 2370 | "varInspector": { |
||
| 2371 | "cols": { |
||
| 2372 | "lenName": 16, |
||
| 2373 | "lenType": 16, |
||
| 2374 | "lenVar": 40 |
||
| 2375 | }, |
||
| 2376 | "kernels_config": { |
||
| 2377 | "python": { |
||
| 2378 | "delete_cmd_postfix": "", |
||
| 2379 | "delete_cmd_prefix": "del ", |
||
| 2380 | "library": "var_list.py", |
||
| 2381 | "varRefreshCmd": "print(var_dic_list())" |
||
| 2382 | }, |
||
| 2383 | "r": { |
||
| 2384 | "delete_cmd_postfix": ") ", |
||
| 2385 | "delete_cmd_prefix": "rm(", |
||
| 2386 | "library": "var_list.r", |
||
| 2387 | "varRefreshCmd": "cat(var_dic_list()) " |
||
| 2388 | } |
||
| 2389 | }, |
||
| 2390 | "types_to_exclude": [ |
||
| 2391 | "module", |
||
| 2392 | "function", |
||
| 2393 | "builtin_function_or_method", |
||
| 2394 | "instance", |
||
| 2395 | "_Feature" |
||
| 2396 | ], |
||
| 2397 | "window_display": false |
||
| 2398 | } |
||
| 2399 | }, |
||
| 2400 | "nbformat": 4, |
||
| 2401 | "nbformat_minor": 2 |
||
| 2402 | } |