deepvariant / Git / Commit [5a4941]

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Commit [5a4941]

Initial commit

Authored by: MarcoTheBlack 2025-04-21

Browse code at this revision

Parent: [0b5aca]

Child: [aba580]

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added	deeptrio/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz.tbi
added	deepvariant/BUILD
added	deepvariant/allele_frequency.py
added	deepvariant/allele_frequency_test.py
added	deepvariant/allelecounter.cc
added	deepvariant/allelecounter.h
added	deepvariant/allelecounter_test.cc
added	deepvariant/alt_aligned_pileup_lib.cc
added	deepvariant/alt_aligned_pileup_lib.h
added	deepvariant/alt_aligned_pileup_lib_test.cc
added	deepvariant/average_model_checkpoint_patched.py
added	deepvariant/call_variants.py
added	deepvariant/call_variants_test.py
added	deepvariant/calling_regions_utils.py
added	deepvariant/calling_regions_utils_test.py
added	deepvariant/channels/BUILD
added	deepvariant/channels/allele_frequency_channel.cc
added	deepvariant/channels/allele_frequency_channel.h
added	deepvariant/channels/avg_base_quality_channel.cc
added	deepvariant/channels/avg_base_quality_channel.h
added	deepvariant/channels/blank_channel.cc
added	deepvariant/channels/blank_channel.h
added	deepvariant/channels/channel.cc
added	deepvariant/channels/channel.h
added	deepvariant/channels/gap_compressed_identity_channel.cc

deeptrio/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz.tbi

Binary file was added.

deepvariant/BUILD Diff Switch to side-by-side view

deepvariant/allele_frequency.py Diff Switch to side-by-side view

deepvariant/allele_frequency_test.py Diff Switch to side-by-side view

deepvariant/allelecounter.cc Diff Switch to side-by-side view

deepvariant/allelecounter.h Diff Switch to side-by-side view

deepvariant/allelecounter_test.cc Diff Switch to side-by-side view

deepvariant/alt_aligned_pileup_lib.cc Diff Switch to side-by-side view

deepvariant/alt_aligned_pileup_lib.h Diff Switch to side-by-side view

deepvariant/alt_aligned_pileup_lib_test.cc Diff Switch to side-by-side view

deepvariant/average_model_checkpoint_patched.py Diff Switch to side-by-side view

deepvariant/call_variants.py Diff Switch to side-by-side view

deepvariant/call_variants_test.py Diff Switch to side-by-side view

deepvariant/calling_regions_utils.py Diff Switch to side-by-side view

deepvariant/calling_regions_utils_test.py Diff Switch to side-by-side view

deepvariant/channels/BUILD Diff Switch to side-by-side view

deepvariant/channels/allele_frequency_channel.cc Diff Switch to side-by-side view

deepvariant/channels/allele_frequency_channel.h Diff Switch to side-by-side view

deepvariant/channels/avg_base_quality_channel.cc Diff Switch to side-by-side view

deepvariant/channels/avg_base_quality_channel.h Diff Switch to side-by-side view

deepvariant/channels/blank_channel.cc Diff Switch to side-by-side view

deepvariant/channels/blank_channel.h Diff Switch to side-by-side view

deepvariant/channels/channel.cc Diff Switch to side-by-side view

deepvariant/channels/channel.h Diff Switch to side-by-side view

deepvariant/channels/gap_compressed_identity_channel.cc Diff Switch to side-by-side view

<< < 1 .. 3 4 5 6 7 .. 35 > >> (Page 5 of 35)