deepvariant / Git / Commit [5a4941]

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MarcoTheBlack/

deepvariant

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Commit [5a4941]

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Initial commit

Authored by: MarcoTheBlack 2025-04-21

Browse code at this revision

Parent: [0b5aca]

Child: [aba580]

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added	deeptrio/testdata/input/HG002_GRCh38_1_22_v4.2.1_benchmark.chr20.bed
added	deeptrio/testdata/input/HG002_GRCh38_1_22_v4.2.1_benchmark.chr20.denovo_regions.bed
added	deeptrio/testdata/input/HG002_GRCh38_1_22_v4.2.1_benchmark.chr20.vcf.gz
added	deeptrio/testdata/input/HG002_GRCh38_1_22_v4.2.1_benchmark.chr20.vcf.gz.tbi
added	deeptrio/testdata/input/HG002_R10_chr20_5050000_5075000.bam
added	deeptrio/testdata/input/HG002_R10_chr20_5050000_5075000.bam.bai
added	deeptrio/testdata/input/HG003_R10_chr20_5050000_5075000.bam
added	deeptrio/testdata/input/HG003_R10_chr20_5050000_5075000.bam.bai
added	deeptrio/testdata/input/HG004_R10_chr20_5050000_5075000.bam
added	deeptrio/testdata/input/HG004_R10_chr20_5050000_5075000.bam.bai
added	deeptrio/testdata/input/NA12891.chr20.10_10p1mb_sorted.bam
added	deeptrio/testdata/input/NA12891.chr20.10_10p1mb_sorted.bam.bai
added	deeptrio/testdata/input/NA12892.chr20.10_10p1mb_sorted.bam
added	deeptrio/testdata/input/NA12892.chr20.10_10p1mb_sorted.bam.bai
added	deeptrio/testdata/input/grch38.chr20_5050000_5075000.masked.fa.fai
added	deeptrio/testdata/input/grch38.chr20_5050000_5075000.masked.fa.gz
added	deeptrio/testdata/input/grch38.chr20_5050000_5075000.masked.fa.gz.fai
added	deeptrio/testdata/input/grch38.chr20_5050000_5075000.masked.fa.gz.gzi
added	deeptrio/testdata/input/hs37d5.chr20.fa.gz
added	deeptrio/testdata/input/hs37d5.chr20.fa.gz.fai
added	deeptrio/testdata/input/hs37d5.chr20.fa.gz.gzi
added	deeptrio/testdata/input/test_giab.b37_chr20_100kbp_at_10mb.bed
added	deeptrio/testdata/input/test_hg001_giab_grch37_chr20_100kbp_at_10mb.vcf.gz
added	deeptrio/testdata/input/test_hg001_giab_grch37_chr20_100kbp_at_10mb.vcf.gz.tbi
added	deeptrio/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz