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 * modification, are permitted provided that the following conditions
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 * 1. Redistributions of source code must retain the above copyright notice,
 *    this list of conditions and the following disclaimer.
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 * 2. Redistributions in binary form must reproduce the above copyright
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 *    documentation and/or other materials provided with the distribution.
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 * 3. Neither the name of the copyright holder nor the names of its
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 *    software without specific prior written permission.
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 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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#if true  // Trick to stop tooling from moving the #include around.
// MUST appear before any standard headers are included.
#include <pybind11/pybind11.h>
#endif

#include <pybind11/stl.h>

#include "deepvariant/postprocess_variants.h"
#include "third_party/nucleus/core/python/type_caster_nucleus_status.h"
#include "third_party/nucleus/core/python/type_caster_nucleus_statusor.h"
#include "third_party/nucleus/protos/range.pb.h"
#include "third_party/nucleus/util/python/type_caster_nucleus_proto_ptr.h"
#include "pybind11_protobuf/native_proto_caster.h"

namespace py = pybind11;

PYBIND11_MODULE(postprocess_variants, m) {
  pybind11_protobuf::ImportNativeProtoCasters();
  using namespace ::learning::genomics::deepvariant;  // NOLINT

  m.def("process_single_sites_tfrecords", &ProcessSingleSiteCallTfRecords,
        py::arg("contigs"), py::arg("tfrecord_paths"),
        py::arg("output_tfrecord_path"), py::arg("partitions"));
}