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a |
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b/deeptrio/testdata/golden.postprocess_gvcf_output.g.vcf |
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1 |
##fileformat=VCFv4.2 |
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2 |
##FILTER=<ID=PASS,Description="All filters passed"> |
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3 |
##FILTER=<ID=RefCall,Description="Genotyping model thinks this site is reference."> |
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4 |
##FILTER=<ID=LowQual,Description="Confidence in this variant being real is below calling threshold."> |
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5 |
##FILTER=<ID=NoCall,Description="Site has depth=0 resulting in no call."> |
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6 |
##INFO=<ID=END,Number=1,Type=Integer,Description="End position (for use with symbolic alleles)"> |
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7 |
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
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8 |
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality"> |
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9 |
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> |
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10 |
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block."> |
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11 |
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> |
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12 |
##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions."> |
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13 |
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer"> |
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14 |
##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer."> |
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15 |
##DeepVariant_version=1.8.0 |
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16 |
##contig=<ID=20,length=63025520> |
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17 |
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT child |
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18 |
20 10000000 . T <*> 0 . END=10000011 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
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19 |
20 10000012 . G <*> 0 . END=10000012 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
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20 |
20 10000013 . C <*> 0 . END=10000013 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
21 |
20 10000014 . T <*> 0 . END=10000033 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
22 |
20 10000034 . C <*> 0 . END=10000035 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
23 |
20 10000036 . A <*> 0 . END=10000040 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
24 |
20 10000041 . G <*> 0 . END=10000047 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
25 |
20 10000048 . C <*> 0 . END=10000051 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
26 |
20 10000052 . A <*> 0 . END=10000056 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
27 |
20 10000057 . T <*> 0 . END=10000057 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
28 |
20 10000058 . G <*> 0 . END=10000058 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
29 |
20 10000059 . T <*> 0 . END=10000076 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
30 |
20 10000077 . T <*> 0 . END=10000077 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
31 |
20 10000078 . T <*> 0 . END=10000089 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
32 |
20 10000090 . A <*> 0 . END=10000099 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
33 |
20 10000100 . T <*> 0 . END=10000100 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
34 |
20 10000101 . T <*> 0 . END=10000104 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
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|
35 |
20 10000105 . T <*> 0 . END=10000105 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
36 |
20 10000106 . T <*> 0 . END=10000116 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
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|
37 |
20 10000117 . C T,<*> 13.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:18:6,12,0:0.666667,0:12,0,20,990,990,990 |
|
|
38 |
20 10000118 . T <*> 0 . END=10000128 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
39 |
20 10000129 . C <*> 0 . END=10000129 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
40 |
20 10000130 . C <*> 0 . END=10000150 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
41 |
20 10000151 . G <*> 0 . END=10000151 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
42 |
20 10000152 . A <*> 0 . END=10000182 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
43 |
20 10000183 . A <*> 0 . END=10000183 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
44 |
20 10000184 . T <*> 0 . END=10000192 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 |
|
|
45 |
20 10000193 . C <*> 0 . END=10000193 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
46 |
20 10000194 . A <*> 0 . END=10000209 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
47 |
20 10000210 . C <*> 0 . END=10000210 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
48 |
20 10000211 . C T,<*> 14.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:21:7,14,0:0.666667,0:14,0,19,990,990,990 |
|
|
49 |
20 10000212 . A <*> 0 . END=10000273 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 |
|
|
50 |
20 10000274 . A <*> 0 . END=10000274 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
51 |
20 10000275 . A <*> 0 . END=10000333 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
52 |
20 10000334 . C <*> 0 . END=10000334 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
53 |
20 10000335 . T <*> 0 . END=10000382 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
54 |
20 10000383 . A <*> 0 . END=10000383 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
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55 |
20 10000384 . A <*> 0 . END=10000416 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
56 |
20 10000417 . G <*> 0 . END=10000417 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
57 |
20 10000418 . C <*> 0 . END=10000438 GT:GQ:MIN_DP:PL 0/0:50:27:0,54,779 |
|
|
58 |
20 10000439 . T G,<*> 31.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:26:1,24,0:0.923077,0:30,8,0,990,990,990 |
|
|
59 |
20 10000440 . T <*> 0 . END=10000452 GT:GQ:MIN_DP:PL 0/0:50:26:0,81,809 |
|
|
60 |
20 10000453 . C <*> 0 . END=10000453 GT:GQ:MIN_DP:PL 0/0:30:30:0,30,779 |
|
|
61 |
20 10000454 . C <*> 0 . END=10000492 GT:GQ:MIN_DP:PL 0/0:50:23:0,87,869 |
|
|
62 |
20 10000493 . T <*> 0 . END=10000493 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
63 |
20 10000494 . C <*> 0 . END=10000508 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
64 |
20 10000509 . A <*> 0 . END=10000509 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
65 |
20 10000510 . C <*> 0 . END=10000513 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
66 |
20 10000514 . C <*> 0 . END=10000514 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
67 |
20 10000515 . G <*> 0 . END=10000516 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
68 |
20 10000517 . G <*> 0 . END=10000517 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
69 |
20 10000518 . A <*> 0 . END=10000590 GT:GQ:MIN_DP:PL 0/0:48:22:0,48,719 |
|
|
70 |
20 10000591 . C <*> 0 . END=10000592 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
71 |
20 10000593 . C <*> 0 . END=10000593 GT:GQ:MIN_DP:PL 0/0:12:24:0,12,599 |
|
|
72 |
20 10000594 . A <*> 0 . END=10000597 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
73 |
20 10000598 . T A,<*> 28 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:25:1,24,0:0.96,0:27,8,0,990,990,990 |
|
|
74 |
20 10000599 . T <*> 0 . END=10000611 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
75 |
20 10000612 . A <*> 0 . END=10000612 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
76 |
20 10000613 . A <*> 0 . END=10000637 GT:GQ:MIN_DP:PL 0/0:50:23:0,78,779 |
|
|
77 |
20 10000638 . G <*> 0 . END=10000638 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
78 |
20 10000639 . G <*> 0 . END=10000641 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
79 |
20 10000642 . G <*> 0 . END=10000642 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
80 |
20 10000643 . C <*> 0 . END=10000693 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 |
|
|
81 |
20 10000694 . G A,<*> 7.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:29:19,10,0:0.344828,0:6,0,18,990,990,990 |
|
|
82 |
20 10000695 . G <*> 0 . END=10000757 GT:GQ:MIN_DP:PL 0/0:48:22:0,48,719 |
|
|
83 |
20 10000758 . T A,<*> 24 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:23:0,23,0:1,0:22,2,0,990,990,990 |
|
|
84 |
20 10000759 . A <*> 0 . END=10000766 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 |
|
|
85 |
20 10000767 . C <*> 0 . END=10000767 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
86 |
20 10000768 . A <*> 0 . END=10000785 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
87 |
20 10000786 . G <*> 0 . END=10000786 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
88 |
20 10000787 . A <*> 0 . END=10000808 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
89 |
20 10000809 . A <*> 0 . END=10000809 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
90 |
20 10000810 . T <*> 0 . END=10000810 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
91 |
20 10000811 . T <*> 0 . END=10000811 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
92 |
20 10000812 . T <*> 0 . END=10000818 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
93 |
20 10000819 . A <*> 0 . END=10000821 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
94 |
20 10000822 . T <*> 0 . END=10000823 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
95 |
20 10000824 . T <*> 0 . END=10000824 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 |
|
|
96 |
20 10000825 . T <*> 0 . END=10000826 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
97 |
20 10000827 . T <*> 0 . END=10000831 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
98 |
20 10000832 . T <*> 0 . END=10000833 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
99 |
20 10000834 . T <*> 0 . END=10000834 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
100 |
20 10000835 . T <*> 0 . END=10000837 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
101 |
20 10000838 . A <*> 0 . END=10000841 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
102 |
20 10000842 . T <*> 0 . END=10000842 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
103 |
20 10000843 . A <*> 0 . END=10000843 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
104 |
20 10000844 . G <*> 0 . END=10000846 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
105 |
20 10000847 . A <*> 0 . END=10000847 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
106 |
20 10000848 . C <*> 0 . END=10000849 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
107 |
20 10000850 . A <*> 0 . END=10000850 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
108 |
20 10000851 . T <*> 0 . END=10000872 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
109 |
20 10000873 . T <*> 0 . END=10000873 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
110 |
20 10000874 . G <*> 0 . END=10000897 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
111 |
20 10000898 . T <*> 0 . END=10000904 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
112 |
20 10000905 . T <*> 0 . END=10000909 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
113 |
20 10000910 . C <*> 0 . END=10000910 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
114 |
20 10000911 . C <*> 0 . END=10000930 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
115 |
20 10000931 . T <*> 0 . END=10000933 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
116 |
20 10000934 . C <*> 0 . END=10000935 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
117 |
20 10000936 . G <*> 0 . END=10000936 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
118 |
20 10000937 . A <*> 0 . END=10000941 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
119 |
20 10000942 . G <*> 0 . END=10000942 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
120 |
20 10000943 . G <*> 0 . END=10000947 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
121 |
20 10000948 . A <*> 0 . END=10000950 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
122 |
20 10000951 . A <*> 0 . END=10000955 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
123 |
20 10000956 . A <*> 0 . END=10000956 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
124 |
20 10000957 . T <*> 0 . END=10000961 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
125 |
20 10000962 . G <*> 0 . END=10000962 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
126 |
20 10000963 . T <*> 0 . END=10000976 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
127 |
20 10000977 . T <*> 0 . END=10000977 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
128 |
20 10000978 . T <*> 0 . END=10000978 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
129 |
20 10000979 . C <*> 0 . END=10000981 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
130 |
20 10000982 . C <*> 0 . END=10000982 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
131 |
20 10000983 . T <*> 0 . END=10000986 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
132 |
20 10000987 . T <*> 0 . END=10000988 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
133 |
20 10000989 . A <*> 0 . END=10000998 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
134 |
20 10000999 . T <*> 0 . END=10000999 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
135 |
20 10001000 . G <*> 0 . END=10001000 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
136 |
20 10001001 . G <*> 0 . END=10001001 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
137 |
20 10001002 . A <*> 0 . END=10001003 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
138 |
20 10001004 . T <*> 0 . END=10001010 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
139 |
20 10001011 . C <*> 0 . END=10001012 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
140 |
20 10001013 . C <*> 0 . END=10001013 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
141 |
20 10001014 . C <*> 0 . END=10001018 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
142 |
20 10001019 . T G,<*> 3.2 RefCall . GT:GQ:DP:AD:VAF:PL ./.:3:16:10,6,0:0.375,0:0,0,9,990,990,990 |
|
|
143 |
20 10001020 . C <*> 0 . END=10001032 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
144 |
20 10001033 . C <*> 0 . END=10001033 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
145 |
20 10001034 . T <*> 0 . END=10001036 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
146 |
20 10001037 . A <*> 0 . END=10001038 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
147 |
20 10001039 . G <*> 0 . END=10001039 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
148 |
20 10001040 . T <*> 0 . END=10001048 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
149 |
20 10001049 . G <*> 0 . END=10001049 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
150 |
20 10001050 . C <*> 0 . END=10001052 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
151 |
20 10001053 . A <*> 0 . END=10001053 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
152 |
20 10001054 . A <*> 0 . END=10001128 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
153 |
20 10001129 . A <*> 0 . END=10001141 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
154 |
20 10001142 . G <*> 0 . END=10001142 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
155 |
20 10001143 . C <*> 0 . END=10001149 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
156 |
20 10001150 . G <*> 0 . END=10001154 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
157 |
20 10001155 . G <*> 0 . END=10001155 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
158 |
20 10001156 . T <*> 0 . END=10001156 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
159 |
20 10001157 . T <*> 0 . END=10001159 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
160 |
20 10001160 . T <*> 0 . END=10001160 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
161 |
20 10001161 . C <*> 0 . END=10001172 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
162 |
20 10001173 . C <*> 0 . END=10001179 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
163 |
20 10001180 . C <*> 0 . END=10001180 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
164 |
20 10001181 . G <*> 0 . END=10001181 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
165 |
20 10001182 . A <*> 0 . END=10001183 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
166 |
20 10001184 . C <*> 0 . END=10001184 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
167 |
20 10001185 . A <*> 0 . END=10001185 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
168 |
20 10001186 . A <*> 0 . END=10001190 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
169 |
20 10001191 . A <*> 0 . END=10001211 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
170 |
20 10001212 . A <*> 0 . END=10001212 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
171 |
20 10001213 . C <*> 0 . END=10001220 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
172 |
20 10001221 . T <*> 0 . END=10001223 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
173 |
20 10001224 . C <*> 0 . END=10001225 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 |
|
|
174 |
20 10001226 . T <*> 0 . END=10001226 GT:GQ:MIN_DP:PL 0/0:3:10:0,0,239 |
|
|
175 |
20 10001227 . A <*> 0 . END=10001243 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 |
|
|
176 |
20 10001244 . T <*> 0 . END=10001246 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
177 |
20 10001247 . G <*> 0 . END=10001251 GT:GQ:MIN_DP:PL 0/0:27:9:0,27,269 |
|
|
178 |
20 10001252 . A <*> 0 . END=10001253 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
179 |
20 10001254 . T <*> 0 . END=10001261 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
180 |
20 10001262 . A <*> 0 . END=10001267 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
181 |
20 10001268 . C <*> 0 . END=10001297 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
182 |
20 10001298 . T A,<*> 23.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:23:0,23,0:1,0:23,10,0,990,990,990 |
|
|
183 |
20 10001299 . C <*> 0 . END=10001333 GT:GQ:MIN_DP:PL 0/0:48:23:0,48,719 |
|
|
184 |
20 10001334 . G <*> 0 . END=10001334 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
185 |
20 10001335 . C <*> 0 . END=10001338 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
186 |
20 10001339 . A <*> 0 . END=10001339 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
187 |
20 10001340 . T <*> 0 . END=10001340 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
188 |
20 10001341 . T <*> 0 . END=10001341 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
189 |
20 10001342 . A <*> 0 . END=10001350 GT:GQ:MIN_DP:PL 0/0:50:22:0,75,749 |
|
|
190 |
20 10001351 . C <*> 0 . END=10001351 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
191 |
20 10001352 . T <*> 0 . END=10001431 GT:GQ:MIN_DP:PL 0/0:48:23:0,48,719 |
|
|
192 |
20 10001432 . A <*> 0 . END=10001432 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
193 |
20 10001433 . T <*> 0 . END=10001435 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
194 |
20 10001436 . A AAGGCT,<*> 22.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:25:0,23,0:0.92,0:21,8,0,990,990,990 |
|
|
195 |
20 10001437 . A <*> 0 . END=10001438 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
196 |
20 10001439 . G <*> 0 . END=10001439 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
197 |
20 10001440 . C <*> 0 . END=10001440 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
198 |
20 10001441 . T <*> 0 . END=10001441 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
199 |
20 10001442 . A <*> 0 . END=10001446 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
200 |
20 10001447 . T <*> 0 . END=10001447 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
201 |
20 10001448 . G <*> 0 . END=10001473 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
202 |
20 10001474 . C T,<*> 24.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:22:0,22,0:1,0:22,2,0,990,990,990 |
|
|
203 |
20 10001475 . G <*> 0 . END=10001489 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
204 |
20 10001490 . C <*> 0 . END=10001490 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
205 |
20 10001491 . A <*> 0 . END=10001600 GT:GQ:MIN_DP:PL 0/0:50:18:0,72,719 |
|
|
206 |
20 10001601 . G <*> 0 . END=10001601 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
207 |
20 10001602 . C <*> 0 . END=10001616 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
208 |
20 10001617 . C A,<*> 8.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:18:11,7,0:0.388889,0:7,0,12,990,990,990 |
|
|
209 |
20 10001618 . T <*> 0 . END=10001627 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
210 |
20 10001628 . G A,<*> 20.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:20:0,20,0:1,0:17,1,0,990,990,990 |
|
|
211 |
20 10001629 . G <*> 0 . END=10001660 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
212 |
20 10001661 . T C,<*> 23.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:16:0,16,0:1,0:20,0,0,990,990,990 |
|
|
213 |
20 10001662 . T <*> 0 . END=10001669 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
214 |
20 10001670 . T G,<*> 20.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:18:0,18,0:1,0:18,2,0,990,990,990 |
|
|
215 |
20 10001671 . G <*> 0 . END=10001716 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
216 |
20 10001717 . G <*> 0 . END=10001717 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
217 |
20 10001718 . G <*> 0 . END=10001733 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
218 |
20 10001734 . C <*> 0 . END=10001734 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
219 |
20 10001735 . T <*> 0 . END=10001737 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 |
|
|
220 |
20 10001738 . C <*> 0 . END=10001738 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
221 |
20 10001739 . C <*> 0 . END=10001739 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
222 |
20 10001740 . T <*> 0 . END=10001742 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
223 |
20 10001743 . G <*> 0 . END=10001761 GT:GQ:MIN_DP:PL 0/0:50:19:0,69,689 |
|
|
224 |
20 10001762 . C <*> 0 . END=10001762 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
225 |
20 10001763 . T <*> 0 . END=10001769 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 |
|
|
226 |
20 10001770 . G <*> 0 . END=10001770 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
227 |
20 10001771 . A <*> 0 . END=10001815 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
228 |
20 10001816 . T <*> 0 . END=10001816 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
229 |
20 10001817 . C <*> 0 . END=10001835 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
230 |
20 10001836 . T <*> 0 . END=10001836 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
231 |
20 10001837 . C <*> 0 . END=10001843 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
232 |
20 10001844 . A <*> 0 . END=10001844 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
233 |
20 10001845 . T <*> 0 . END=10001877 GT:GQ:MIN_DP:PL 0/0:50:18:0,69,689 |
|
|
234 |
20 10001878 . G <*> 0 . END=10001878 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
235 |
20 10001879 . A <*> 0 . END=10001882 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
236 |
20 10001883 . A <*> 0 . END=10001883 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
237 |
20 10001884 . G <*> 0 . END=10001897 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
238 |
20 10001898 . A <*> 0 . END=10001898 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
239 |
20 10001899 . A <*> 0 . END=10001903 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
240 |
20 10001904 . A <*> 0 . END=10001905 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
241 |
20 10001906 . A <*> 0 . END=10001909 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
242 |
20 10001910 . A <*> 0 . END=10001910 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
243 |
20 10001911 . C <*> 0 . END=10001935 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
244 |
20 10001936 . A <*> 0 . END=10001936 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
245 |
20 10001937 . T <*> 0 . END=10001942 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
246 |
20 10001943 . T <*> 0 . END=10001943 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
247 |
20 10001944 . A <*> 0 . END=10001960 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
248 |
20 10001961 . G <*> 0 . END=10001961 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
249 |
20 10001962 . A <*> 0 . END=10001962 GT:GQ:MIN_DP:PL ./.:0:17:8,0,398 |
|
|
250 |
20 10001963 . G <*> 0 . END=10001971 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
251 |
20 10001972 . G <*> 0 . END=10001972 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
252 |
20 10001973 . G <*> 0 . END=10001975 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
253 |
20 10001976 . T <*> 0 . END=10001976 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
254 |
20 10001977 . T <*> 0 . END=10001988 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
255 |
20 10001989 . C <*> 0 . END=10001991 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
256 |
20 10001992 . T <*> 0 . END=10001992 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
257 |
20 10001993 . G <*> 0 . END=10001996 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
258 |
20 10001997 . A <*> 0 . END=10001998 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
259 |
20 10001999 . C <*> 0 . END=10001999 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
260 |
20 10002000 . T <*> 0 . END=10002008 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
261 |
20 10002009 . A <*> 0 . END=10002009 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
262 |
20 10002010 . T <*> 0 . END=10002015 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
263 |
20 10002016 . T <*> 0 . END=10002016 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
264 |
20 10002017 . T <*> 0 . END=10002045 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
265 |
20 10002046 . C <*> 0 . END=10002046 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
266 |
20 10002047 . T <*> 0 . END=10002047 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
267 |
20 10002048 . G <*> 0 . END=10002052 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
268 |
20 10002053 . C <*> 0 . END=10002053 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
269 |
20 10002054 . A <*> 0 . END=10002054 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
270 |
20 10002055 . T <*> 0 . END=10002056 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
271 |
20 10002057 . A <*> 0 . END=10002057 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
272 |
20 10002058 . T G,<*> 23.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:18:0,18,0:1,0:23,12,0,990,990,990 |
|
|
273 |
20 10002059 . A <*> 0 . END=10002062 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
274 |
20 10002063 . A <*> 0 . END=10002063 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
275 |
20 10002064 . A <*> 0 . END=10002071 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
276 |
20 10002072 . T <*> 0 . END=10002072 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
277 |
20 10002073 . T <*> 0 . END=10002076 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
278 |
20 10002077 . C <*> 0 . END=10002077 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
279 |
20 10002078 . A <*> 0 . END=10002083 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
280 |
20 10002084 . G <*> 0 . END=10002084 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
281 |
20 10002085 . A <*> 0 . END=10002085 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
282 |
20 10002086 . G <*> 0 . END=10002086 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
283 |
20 10002087 . G <*> 0 . END=10002087 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
284 |
20 10002088 . C <*> 0 . END=10002088 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
285 |
20 10002089 . A <*> 0 . END=10002091 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
286 |
20 10002092 . G <*> 0 . END=10002092 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
287 |
20 10002093 . T <*> 0 . END=10002098 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
288 |
20 10002099 . C T,<*> 24.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:17:6,11,0:0.647059,0:24,0,33,990,990,990 |
|
|
289 |
20 10002100 . T <*> 0 . END=10002120 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
290 |
20 10002121 . C <*> 0 . END=10002121 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
291 |
20 10002122 . A <*> 0 . END=10002122 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
292 |
20 10002123 . T <*> 0 . END=10002124 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
293 |
20 10002125 . T <*> 0 . END=10002125 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
294 |
20 10002126 . G <*> 0 . END=10002127 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
295 |
20 10002128 . T <*> 0 . END=10002128 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
296 |
20 10002129 . G <*> 0 . END=10002131 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
297 |
20 10002132 . T <*> 0 . END=10002135 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
298 |
20 10002136 . T <*> 0 . END=10002136 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
299 |
20 10002137 . G <*> 0 . END=10002137 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
300 |
20 10002138 . C G,<*> 19 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:15:0,15,0:1,0:16,0,0,990,990,990 |
|
|
301 |
20 10002139 . A <*> 0 . END=10002139 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
302 |
20 10002140 . C <*> 0 . END=10002141 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
303 |
20 10002142 . G C,<*> 17.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:15:0,13,0:0.866667,0:14,1,0,990,990,990 |
|
|
304 |
20 10002143 . T <*> 0 . END=10002143 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
305 |
20 10002144 . A <*> 0 . END=10002145 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
306 |
20 10002146 . C <*> 0 . END=10002146 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
307 |
20 10002147 . T <*> 0 . END=10002149 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
308 |
20 10002150 . C <*> 0 . END=10002150 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
309 |
20 10002151 . A <*> 0 . END=10002153 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
310 |
20 10002154 . C <*> 0 . END=10002155 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
311 |
20 10002156 . T <*> 0 . END=10002158 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
312 |
20 10002159 . C <*> 0 . END=10002162 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
313 |
20 10002163 . G <*> 0 . END=10002163 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
314 |
20 10002164 . T <*> 0 . END=10002166 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
315 |
20 10002167 . G <*> 0 . END=10002167 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
316 |
20 10002168 . T <*> 0 . END=10002168 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
317 |
20 10002169 . G <*> 0 . END=10002169 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
318 |
20 10002170 . G <*> 0 . END=10002170 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
319 |
20 10002171 . G <*> 0 . END=10002178 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
320 |
20 10002179 . G <*> 0 . END=10002179 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
321 |
20 10002180 . G <*> 0 . END=10002181 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
322 |
20 10002182 . C <*> 0 . END=10002182 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
323 |
20 10002183 . A <*> 0 . END=10002188 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
324 |
20 10002189 . A <*> 0 . END=10002189 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
325 |
20 10002190 . T <*> 0 . END=10002197 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
326 |
20 10002198 . G <*> 0 . END=10002198 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
327 |
20 10002199 . A <*> 0 . END=10002203 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
328 |
20 10002204 . G <*> 0 . END=10002207 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
329 |
20 10002208 . G <*> 0 . END=10002209 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
330 |
20 10002210 . C <*> 0 . END=10002210 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
331 |
20 10002211 . T <*> 0 . END=10002211 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
332 |
20 10002212 . G <*> 0 . END=10002212 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
333 |
20 10002213 . T <*> 0 . END=10002214 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
334 |
20 10002215 . A <*> 0 . END=10002215 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
335 |
20 10002216 . G <*> 0 . END=10002216 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
336 |
20 10002217 . C <*> 0 . END=10002217 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
337 |
20 10002218 . T <*> 0 . END=10002221 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
338 |
20 10002222 . A <*> 0 . END=10002222 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
339 |
20 10002223 . G <*> 0 . END=10002223 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
340 |
20 10002224 . C <*> 0 . END=10002229 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
341 |
20 10002230 . C <*> 0 . END=10002230 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
342 |
20 10002231 . A <*> 0 . END=10002237 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
343 |
20 10002238 . G <*> 0 . END=10002238 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
344 |
20 10002239 . C <*> 0 . END=10002239 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
345 |
20 10002240 . A <*> 0 . END=10002243 GT:GQ:MIN_DP:PL 0/0:50:18:0,66,659 |
|
|
346 |
20 10002244 . G <*> 0 . END=10002244 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
347 |
20 10002245 . G <*> 0 . END=10002252 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
348 |
20 10002253 . C <*> 0 . END=10002253 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
349 |
20 10002254 . A <*> 0 . END=10002262 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
350 |
20 10002263 . A <*> 0 . END=10002264 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
351 |
20 10002265 . G <*> 0 . END=10002279 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
352 |
20 10002280 . C <*> 0 . END=10002280 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
353 |
20 10002281 . T <*> 0 . END=10002319 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 |
|
|
354 |
20 10002320 . A <*> 0 . END=10002320 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
355 |
20 10002321 . T <*> 0 . END=10002350 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 |
|
|
356 |
20 10002351 . A <*> 0 . END=10002351 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
357 |
20 10002352 . T <*> 0 . END=10002368 GT:GQ:MIN_DP:PL 0/0:50:19:0,69,689 |
|
|
358 |
20 10002369 . C <*> 0 . END=10002369 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
359 |
20 10002370 . T <*> 0 . END=10002373 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
360 |
20 10002374 . G <*> 0 . END=10002374 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
361 |
20 10002375 . C <*> 0 . END=10002386 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
362 |
20 10002387 . A <*> 0 . END=10002392 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
363 |
20 10002393 . G <*> 0 . END=10002393 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
364 |
20 10002394 . C <*> 0 . END=10002395 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
365 |
20 10002396 . G <*> 0 . END=10002396 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
366 |
20 10002397 . G <*> 0 . END=10002397 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
367 |
20 10002398 . T <*> 0 . END=10002398 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
368 |
20 10002399 . T <*> 0 . END=10002414 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
369 |
20 10002415 . A <*> 0 . END=10002429 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
370 |
20 10002430 . C <*> 0 . END=10002440 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
371 |
20 10002441 . C <*> 0 . END=10002444 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
372 |
20 10002445 . C <*> 0 . END=10002445 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
373 |
20 10002446 . T <*> 0 . END=10002446 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
374 |
20 10002447 . G <*> 0 . END=10002447 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
375 |
20 10002448 . A <*> 0 . END=10002448 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 |
|
|
376 |
20 10002449 . T <*> 0 . END=10002449 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
377 |
20 10002450 . G <*> 0 . END=10002453 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
378 |
20 10002454 . G <*> 0 . END=10002456 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
379 |
20 10002457 . A <*> 0 . END=10002457 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 |
|
|
380 |
20 10002458 . G GTT,GTTT,<*> 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:16:0,6,9,0:0.375,0.5625,0:26,0,18,0,2,25,990,990,990,990 |
|
|
381 |
20 10002459 . T <*> 0 . END=10002466 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
382 |
20 10002467 . T <*> 0 . END=10002469 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
383 |
20 10002470 . C T,<*> 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:14:0,14,0:1,0:20,0,2,990,990,990 |
|
|
384 |
20 10002471 . T <*> 0 . END=10002476 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
385 |
20 10002477 . T <*> 0 . END=10002477 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
386 |
20 10002478 . A <*> 0 . END=10002479 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
387 |
20 10002480 . G <*> 0 . END=10002480 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
388 |
20 10002481 . A <*> 0 . END=10002481 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
389 |
20 10002482 . G <*> 0 . END=10002482 GT:GQ:MIN_DP:PL ./.:0:17:8,0,398 |
|
|
390 |
20 10002483 . A <*> 0 . END=10002483 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
391 |
20 10002484 . T <*> 0 . END=10002484 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
392 |
20 10002485 . G <*> 0 . END=10002486 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
393 |
20 10002487 . G <*> 0 . END=10002487 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
394 |
20 10002488 . G <*> 0 . END=10002490 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
395 |
20 10002491 . T <*> 0 . END=10002491 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
396 |
20 10002492 . C <*> 0 . END=10002492 GT:GQ:MIN_DP:PL ./.:0:18:5,0,425 |
|
|
397 |
20 10002493 . A <*> 0 . END=10002493 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
398 |
20 10002494 . C <*> 0 . END=10002495 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
399 |
20 10002496 . A <*> 0 . END=10002496 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
400 |
20 10002497 . T <*> 0 . END=10002497 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
401 |
20 10002498 . G <*> 0 . END=10002498 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
402 |
20 10002499 . T <*> 0 . END=10002500 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
403 |
20 10002501 . G <*> 0 . END=10002501 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 |
|
|
404 |
20 10002502 . G <*> 0 . END=10002506 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
405 |
20 10002507 . G <*> 0 . END=10002507 GT:GQ:MIN_DP:PL ./.:0:19:32,0,422 |
|
|
406 |
20 10002508 . C <*> 0 . END=10002508 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
407 |
20 10002509 . T <*> 0 . END=10002510 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
408 |
20 10002511 . G <*> 0 . END=10002511 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
409 |
20 10002512 . T <*> 0 . END=10002512 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
410 |
20 10002513 . C <*> 0 . END=10002513 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
411 |
20 10002514 . G <*> 0 . END=10002514 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
412 |
20 10002515 . T <*> 0 . END=10002515 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
413 |
20 10002516 . G <*> 0 . END=10002516 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
414 |
20 10002517 . A <*> 0 . END=10002517 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
415 |
20 10002518 . A <*> 0 . END=10002518 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
416 |
20 10002519 . C <*> 0 . END=10002519 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
417 |
20 10002520 . T <*> 0 . END=10002520 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
418 |
20 10002521 . C <*> 0 . END=10002523 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
419 |
20 10002524 . G <*> 0 . END=10002525 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
420 |
20 10002526 . C <*> 0 . END=10002526 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
421 |
20 10002527 . C <*> 0 . END=10002527 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
422 |
20 10002528 . T <*> 0 . END=10002532 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
423 |
20 10002533 . G <*> 0 . END=10002533 GT:GQ:MIN_DP:PL 0/0:3:20:0,0,479 |
|
|
424 |
20 10002534 . G <*> 0 . END=10002538 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
425 |
20 10002539 . C <*> 0 . END=10002539 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
426 |
20 10002540 . C <*> 0 . END=10002540 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
427 |
20 10002541 . A <*> 0 . END=10002541 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
428 |
20 10002542 . A <*> 0 . END=10002544 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 |
|
|
429 |
20 10002545 . T <*> 0 . END=10002546 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
430 |
20 10002547 . T <*> 0 . END=10002551 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
431 |
20 10002552 . A <*> 0 . END=10002553 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
432 |
20 10002554 . T <*> 0 . END=10002554 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
433 |
20 10002555 . A <*> 0 . END=10002555 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
434 |
20 10002556 . C <*> 0 . END=10002558 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
435 |
20 10002559 . A <*> 0 . END=10002559 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
436 |
20 10002560 . C <*> 0 . END=10002572 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
437 |
20 10002573 . G <*> 0 . END=10002573 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
438 |
20 10002574 . C <*> 0 . END=10002579 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
439 |
20 10002580 . C <*> 0 . END=10002580 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
440 |
20 10002581 . A <*> 0 . END=10002585 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
441 |
20 10002586 . T <*> 0 . END=10002586 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
442 |
20 10002587 . T <*> 0 . END=10002592 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 |
|
|
443 |
20 10002593 . C <*> 0 . END=10002593 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
444 |
20 10002594 . C <*> 0 . END=10002594 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
445 |
20 10002595 . T <*> 0 . END=10002596 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 |
|
|
446 |
20 10002597 . A <*> 0 . END=10002597 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
447 |
20 10002598 . A <*> 0 . END=10002598 GT:GQ:MIN_DP:PL 0/0:7:22:0,6,539 |
|
|
448 |
20 10002599 . G <*> 0 . END=10002599 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
449 |
20 10002600 . A <*> 0 . END=10002600 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
450 |
20 10002601 . A <*> 0 . END=10002603 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
451 |
20 10002604 . G <*> 0 . END=10002604 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
452 |
20 10002605 . A <*> 0 . END=10002616 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 |
|
|
453 |
20 10002617 . A <*> 0 . END=10002618 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
454 |
20 10002619 . A <*> 0 . END=10002620 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
455 |
20 10002621 . T <*> 0 . END=10002621 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
456 |
20 10002622 . T <*> 0 . END=10002622 GT:GQ:MIN_DP:PL 0/0:9:23:0,9,569 |
|
|
457 |
20 10002623 . T <*> 0 . END=10002623 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
458 |
20 10002624 . A <*> 0 . END=10002624 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
459 |
20 10002625 . G T,<*> 25.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:22:0,22,0:1,0:23,3,0,990,990,990 |
|
|
460 |
20 10002626 . G <*> 0 . END=10002635 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
461 |
20 10002636 . C <*> 0 . END=10002636 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
462 |
20 10002637 . A <*> 0 . END=10002656 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
463 |
20 10002657 . C <*> 0 . END=10002657 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
464 |
20 10002658 . A <*> 0 . END=10002667 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 |
|
|
465 |
20 10002668 . G <*> 0 . END=10002668 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
466 |
20 10002669 . T <*> 0 . END=10002672 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
467 |
20 10002673 . A <*> 0 . END=10002673 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
468 |
20 10002674 . A <*> 0 . END=10002679 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
469 |
20 10002680 . T <*> 0 . END=10002680 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
470 |
20 10002681 . C <*> 0 . END=10002722 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
471 |
20 10002723 . T <*> 0 . END=10002724 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
472 |
20 10002725 . C <*> 0 . END=10002744 GT:GQ:MIN_DP:PL 0/0:50:17:0,60,599 |
|
|
473 |
20 10002745 . C <*> 0 . END=10002745 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
474 |
20 10002746 . C <*> 0 . END=10002749 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
475 |
20 10002750 . A <*> 0 . END=10002750 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
476 |
20 10002751 . T <*> 0 . END=10002764 GT:GQ:MIN_DP:PL 0/0:50:17:0,60,599 |
|
|
477 |
20 10002765 . T <*> 0 . END=10002766 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
478 |
20 10002767 . T <*> 0 . END=10002775 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
479 |
20 10002776 . C <*> 0 . END=10002778 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
480 |
20 10002779 . A <*> 0 . END=10002779 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
481 |
20 10002780 . G <*> 0 . END=10002780 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
482 |
20 10002781 . G <*> 0 . END=10002811 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
483 |
20 10002812 . C <*> 0 . END=10002812 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
484 |
20 10002813 . T <*> 0 . END=10002818 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
485 |
20 10002819 . A <*> 0 . END=10002819 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
486 |
20 10002820 . A <*> 0 . END=10002828 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
487 |
20 10002829 . A <*> 0 . END=10002829 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
488 |
20 10002830 . A <*> 0 . END=10002936 GT:GQ:MIN_DP:PL 0/0:50:18:0,66,659 |
|
|
489 |
20 10002937 . A <*> 0 . END=10002937 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
490 |
20 10002938 . A <*> 0 . END=10002944 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
491 |
20 10002945 . C <*> 0 . END=10002946 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
492 |
20 10002947 . A <*> 0 . END=10002956 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
493 |
20 10002957 . G <*> 0 . END=10002957 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
494 |
20 10002958 . T <*> 0 . END=10002965 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
495 |
20 10002966 . G <*> 0 . END=10002966 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
496 |
20 10002967 . T <*> 0 . END=10002985 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
497 |
20 10002986 . G <*> 0 . END=10002986 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
498 |
20 10002987 . C <*> 0 . END=10002987 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
499 |
20 10002988 . T <*> 0 . END=10002988 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
500 |
20 10002989 . G <*> 0 . END=10002989 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
501 |
20 10002990 . A <*> 0 . END=10002999 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
502 |
20 10003000 . A <*> 0 . END=10003001 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
503 |
20 10003002 . C <*> 0 . END=10003002 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
504 |
20 10003003 . T <*> 0 . END=10003005 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
505 |
20 10003006 . G <*> 0 . END=10003006 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
506 |
20 10003007 . C <*> 0 . END=10003010 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
507 |
20 10003011 . G <*> 0 . END=10003011 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
508 |
20 10003012 . C <*> 0 . END=10003012 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
509 |
20 10003013 . A <*> 0 . END=10003013 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
510 |
20 10003014 . G <*> 0 . END=10003014 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
511 |
20 10003015 . G <*> 0 . END=10003020 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
512 |
20 10003021 . C T,<*> 33.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:17:0,17,0:1,0:30,0,0,990,990,990 |
|
|
513 |
20 10003022 . G <*> 0 . END=10003026 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
514 |
20 10003027 . T <*> 0 . END=10003027 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
515 |
20 10003028 . G <*> 0 . END=10003029 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
516 |
20 10003030 . C <*> 0 . END=10003030 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
517 |
20 10003031 . T <*> 0 . END=10003033 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
518 |
20 10003034 . G <*> 0 . END=10003034 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
519 |
20 10003035 . G <*> 0 . END=10003049 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
520 |
20 10003050 . A <*> 0 . END=10003050 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
521 |
20 10003051 . G <*> 0 . END=10003059 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
522 |
20 10003060 . A <*> 0 . END=10003065 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
523 |
20 10003066 . C <*> 0 . END=10003066 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
524 |
20 10003067 . T <*> 0 . END=10003070 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
525 |
20 10003071 . C <*> 0 . END=10003078 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
526 |
20 10003079 . G <*> 0 . END=10003084 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
527 |
20 10003085 . G <*> 0 . END=10003088 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
528 |
20 10003089 . G <*> 0 . END=10003090 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
529 |
20 10003091 . A <*> 0 . END=10003102 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
530 |
20 10003103 . T <*> 0 . END=10003103 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
531 |
20 10003104 . T <*> 0 . END=10003107 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
532 |
20 10003108 . C <*> 0 . END=10003109 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
533 |
20 10003110 . C <*> 0 . END=10003116 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
534 |
20 10003117 . G <*> 0 . END=10003117 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 |
|
|
535 |
20 10003118 . C <*> 0 . END=10003119 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
536 |
20 10003120 . G <*> 0 . END=10003124 GT:GQ:MIN_DP:PL 0/0:27:9:0,27,269 |
|
|
537 |
20 10003125 . G <*> 0 . END=10003125 GT:GQ:MIN_DP:PL 0/0:24:8:0,24,239 |
|
|
538 |
20 10003126 . C <*> 0 . END=10003127 GT:GQ:MIN_DP:PL 0/0:27:9:0,27,269 |
|
|
539 |
20 10003128 . A <*> 0 . END=10003129 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
540 |
20 10003130 . T <*> 0 . END=10003140 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
541 |
20 10003141 . A <*> 0 . END=10003159 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
542 |
20 10003160 . G <*> 0 . END=10003185 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
543 |
20 10003186 . A <*> 0 . END=10003186 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
544 |
20 10003187 . C <*> 0 . END=10003200 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
545 |
20 10003201 . C <*> 0 . END=10003209 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
546 |
20 10003210 . C <*> 0 . END=10003229 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
547 |
20 10003230 . G <*> 0 . END=10003230 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
548 |
20 10003231 . A <*> 0 . END=10003265 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
549 |
20 10003266 . A <*> 0 . END=10003266 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
550 |
20 10003267 . C <*> 0 . END=10003310 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
551 |
20 10003311 . A <*> 0 . END=10003311 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
552 |
20 10003312 . A <*> 0 . END=10003322 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
553 |
20 10003323 . C <*> 0 . END=10003323 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
554 |
20 10003324 . C <*> 0 . END=10003335 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
555 |
20 10003336 . C <*> 0 . END=10003336 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
556 |
20 10003337 . T <*> 0 . END=10003338 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
557 |
20 10003339 . C <*> 0 . END=10003339 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
558 |
20 10003340 . C <*> 0 . END=10003340 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
559 |
20 10003341 . A <*> 0 . END=10003343 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
560 |
20 10003344 . C <*> 0 . END=10003344 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
561 |
20 10003345 . C <*> 0 . END=10003354 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
562 |
20 10003355 . A <*> 0 . END=10003355 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
563 |
20 10003356 . C <*> 0 . END=10003357 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
564 |
20 10003358 . A C,<*> 9.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:16:12,4,0:0.25,0:8,0,19,990,990,990 |
|
|
565 |
20 10003359 . C <*> 0 . END=10003360 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
566 |
20 10003361 . G <*> 0 . END=10003363 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
567 |
20 10003364 . G <*> 0 . END=10003364 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
568 |
20 10003365 . A <*> 0 . END=10003365 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
569 |
20 10003366 . G <*> 0 . END=10003366 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
570 |
20 10003367 . G <*> 0 . END=10003368 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
571 |
20 10003369 . G <*> 0 . END=10003369 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
572 |
20 10003370 . A <*> 0 . END=10003370 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
573 |
20 10003371 . T <*> 0 . END=10003371 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
574 |
20 10003372 . G <*> 0 . END=10003372 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
575 |
20 10003373 . C <*> 0 . END=10003374 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
576 |
20 10003375 . A <*> 0 . END=10003375 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
577 |
20 10003376 . C <*> 0 . END=10003376 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
578 |
20 10003377 . A <*> 0 . END=10003377 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
579 |
20 10003378 . G <*> 0 . END=10003378 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
580 |
20 10003379 . T <*> 0 . END=10003379 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
581 |
20 10003380 . C <*> 0 . END=10003382 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
582 |
20 10003383 . T <*> 0 . END=10003383 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
583 |
20 10003384 . A <*> 0 . END=10003386 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
584 |
20 10003387 . A <*> 0 . END=10003389 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
585 |
20 10003390 . G <*> 0 . END=10003390 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
586 |
20 10003391 . T <*> 0 . END=10003394 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
587 |
20 10003395 . C <*> 0 . END=10003397 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
588 |
20 10003398 . G <*> 0 . END=10003399 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
589 |
20 10003400 . C <*> 0 . END=10003418 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
590 |
20 10003419 . G <*> 0 . END=10003419 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
591 |
20 10003420 . T <*> 0 . END=10003421 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
592 |
20 10003422 . T <*> 0 . END=10003422 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
593 |
20 10003423 . T <*> 0 . END=10003424 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
594 |
20 10003425 . C <*> 0 . END=10003453 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
595 |
20 10003454 . A <*> 0 . END=10003456 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
596 |
20 10003457 . C <*> 0 . END=10003466 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
597 |
20 10003467 . T <*> 0 . END=10003477 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
598 |
20 10003478 . C <*> 0 . END=10003501 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
599 |
20 10003502 . G <*> 0 . END=10003502 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
600 |
20 10003503 . C <*> 0 . END=10003506 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
601 |
20 10003507 . G <*> 0 . END=10003508 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
602 |
20 10003509 . A <*> 0 . END=10003512 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
603 |
20 10003513 . G <*> 0 . END=10003513 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
604 |
20 10003514 . A <*> 0 . END=10003514 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
605 |
20 10003515 . A <*> 0 . END=10003515 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
606 |
20 10003516 . T <*> 0 . END=10003516 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
607 |
20 10003517 . G <*> 0 . END=10003518 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
608 |
20 10003519 . C <*> 0 . END=10003522 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
609 |
20 10003523 . G <*> 0 . END=10003523 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
610 |
20 10003524 . A <*> 0 . END=10003528 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
611 |
20 10003529 . C <*> 0 . END=10003529 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
612 |
20 10003530 . A <*> 0 . END=10003535 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
613 |
20 10003536 . A <*> 0 . END=10003536 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
614 |
20 10003537 . T <*> 0 . END=10003547 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
615 |
20 10003548 . G <*> 0 . END=10003548 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
616 |
20 10003549 . A <*> 0 . END=10003556 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
617 |
20 10003557 . G <*> 0 . END=10003557 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
618 |
20 10003558 . A <*> 0 . END=10003558 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
619 |
20 10003559 . G <*> 0 . END=10003559 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
620 |
20 10003560 . C <*> 0 . END=10003570 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
621 |
20 10003571 . T <*> 0 . END=10003571 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
622 |
20 10003572 . T <*> 0 . END=10003574 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
623 |
20 10003575 . T <*> 0 . END=10003575 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
624 |
20 10003576 . C <*> 0 . END=10003583 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
625 |
20 10003584 . G <*> 0 . END=10003584 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
626 |
20 10003585 . C <*> 0 . END=10003602 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
627 |
20 10003603 . T <*> 0 . END=10003603 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
628 |
20 10003604 . T <*> 0 . END=10003609 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 |
|
|
629 |
20 10003610 . G <*> 0 . END=10003610 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
630 |
20 10003611 . C <*> 0 . END=10003615 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
631 |
20 10003616 . G <*> 0 . END=10003616 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
632 |
20 10003617 . T <*> 0 . END=10003621 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
633 |
20 10003622 . G <*> 0 . END=10003623 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
634 |
20 10003624 . A <*> 0 . END=10003640 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
635 |
20 10003641 . G <*> 0 . END=10003641 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
636 |
20 10003642 . C <*> 0 . END=10003650 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
637 |
20 10003651 . T C,<*> 26.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:16:0,16,0:1,0:24,0,0,990,990,990 |
|
|
638 |
20 10003652 . C <*> 0 . END=10003654 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
639 |
20 10003655 . C <*> 0 . END=10003662 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
640 |
20 10003663 . T <*> 0 . END=10003663 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
641 |
20 10003664 . G <*> 0 . END=10003664 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
642 |
20 10003665 . G <*> 0 . END=10003665 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
643 |
20 10003666 . T <*> 0 . END=10003666 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
644 |
20 10003667 . T <*> 0 . END=10003672 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
645 |
20 10003673 . T <*> 0 . END=10003687 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
646 |
20 10003688 . A <*> 0 . END=10003688 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
647 |
20 10003689 . T <*> 0 . END=10003689 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
648 |
20 10003690 . C <*> 0 . END=10003691 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
649 |
20 10003692 . A G,<*> 31.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:13:0,13,0:1,0:29,2,0,990,990,990 |
|
|
650 |
20 10003693 . T <*> 0 . END=10003699 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
651 |
20 10003700 . A <*> 0 . END=10003703 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
652 |
20 10003704 . T <*> 0 . END=10003706 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
653 |
20 10003707 . A <*> 0 . END=10003712 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
654 |
20 10003713 . C <*> 0 . END=10003713 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
655 |
20 10003714 . A <*> 0 . END=10003731 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
656 |
20 10003732 . C <*> 0 . END=10003732 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
657 |
20 10003733 . T <*> 0 . END=10003765 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
658 |
20 10003766 . A <*> 0 . END=10003766 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
659 |
20 10003767 . C <*> 0 . END=10003772 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
660 |
20 10003773 . A <*> 0 . END=10003773 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
661 |
20 10003774 . G <*> 0 . END=10003804 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
662 |
20 10003805 . A <*> 0 . END=10003805 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
663 |
20 10003806 . G <*> 0 . END=10003816 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 |
|
|
664 |
20 10003817 . A <*> 0 . END=10003817 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
665 |
20 10003818 . G <*> 0 . END=10003824 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
666 |
20 10003825 . G <*> 0 . END=10003825 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
667 |
20 10003826 . C <*> 0 . END=10003831 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
668 |
20 10003832 . G A,<*> 31.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:27:0,27,0:1,0:31,10,0,990,990,990 |
|
|
669 |
20 10003833 . T <*> 0 . END=10003850 GT:GQ:MIN_DP:PL 0/0:50:25:0,78,779 |
|
|
670 |
20 10003851 . T <*> 0 . END=10003852 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
671 |
20 10003853 . G <*> 0 . END=10003853 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
672 |
20 10003854 . T <*> 0 . END=10003854 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
673 |
20 10003855 . T <*> 0 . END=10003860 GT:GQ:MIN_DP:PL 0/0:50:20:0,72,719 |
|
|
674 |
20 10003861 . A <*> 0 . END=10003861 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
675 |
20 10003862 . A <*> 0 . END=10003862 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
676 |
20 10003863 . G <*> 0 . END=10003863 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
677 |
20 10003864 . C <*> 0 . END=10003864 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
678 |
20 10003865 . C <*> 0 . END=10003865 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
679 |
20 10003866 . A <*> 0 . END=10003866 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
680 |
20 10003867 . A <*> 0 . END=10003867 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
681 |
20 10003868 . T <*> 0 . END=10003874 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
682 |
20 10003875 . A <*> 0 . END=10003875 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
683 |
20 10003876 . T <*> 0 . END=10003948 GT:GQ:MIN_DP:PL 0/0:50:22:0,72,719 |
|
|
684 |
20 10003949 . T <*> 0 . END=10003949 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
685 |
20 10003950 . G <*> 0 . END=10003967 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
686 |
20 10003968 . T <*> 0 . END=10003968 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
687 |
20 10003969 . G <*> 0 . END=10003981 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
688 |
20 10003982 . T <*> 0 . END=10003982 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
689 |
20 10003983 . G <*> 0 . END=10003999 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 |
|
|
690 |
20 10004000 . G <*> 0 . END=10004036 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
691 |
20 10004037 . T <*> 0 . END=10004037 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
692 |
20 10004038 . A <*> 0 . END=10004038 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
693 |
20 10004039 . T <*> 0 . END=10004039 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 |
|
|
694 |
20 10004040 . G <*> 0 . END=10004040 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
695 |
20 10004041 . G <*> 0 . END=10004044 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
696 |
20 10004045 . A <*> 0 . END=10004045 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
697 |
20 10004046 . A <*> 0 . END=10004046 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
698 |
20 10004047 . C <*> 0 . END=10004047 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
699 |
20 10004048 . C <*> 0 . END=10004049 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
700 |
20 10004050 . C <*> 0 . END=10004050 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
701 |
20 10004051 . G <*> 0 . END=10004054 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
702 |
20 10004055 . C <*> 0 . END=10004055 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 |
|
|
703 |
20 10004056 . T <*> 0 . END=10004056 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
704 |
20 10004057 . A <*> 0 . END=10004057 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 |
|
|
705 |
20 10004058 . C <*> 0 . END=10004058 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 |
|
|
706 |
20 10004059 . T <*> 0 . END=10004059 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
707 |
20 10004060 . A <*> 0 . END=10004061 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
708 |
20 10004062 . A <*> 0 . END=10004062 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
709 |
20 10004063 . A <*> 0 . END=10004063 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
710 |
20 10004064 . A <*> 0 . END=10004064 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
711 |
20 10004065 . T <*> 0 . END=10004071 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
712 |
20 10004072 . A <*> 0 . END=10004073 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 |
|
|
713 |
20 10004074 . T <*> 0 . END=10004074 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
714 |
20 10004075 . A <*> 0 . END=10004076 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
715 |
20 10004077 . C <*> 0 . END=10004077 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
716 |
20 10004078 . T <*> 0 . END=10004079 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
717 |
20 10004080 . G <*> 0 . END=10004081 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
718 |
20 10004082 . C <*> 0 . END=10004082 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
719 |
20 10004083 . A <*> 0 . END=10004083 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
720 |
20 10004084 . T <*> 0 . END=10004085 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
721 |
20 10004086 . G <*> 0 . END=10004092 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
722 |
20 10004093 . G <*> 0 . END=10004093 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
723 |
20 10004094 . A C,<*> 23.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:13:0,13,0:1,0:22,0,6,990,990,990 |
|
|
724 |
20 10004095 . C <*> 0 . END=10004102 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
725 |
20 10004103 . T <*> 0 . END=10004104 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
726 |
20 10004105 . C <*> 0 . END=10004105 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
727 |
20 10004106 . C <*> 0 . END=10004106 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
728 |
20 10004107 . A <*> 0 . END=10004108 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
729 |
20 10004109 . C <*> 0 . END=10004109 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
730 |
20 10004110 . T <*> 0 . END=10004110 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
731 |
20 10004111 . A <*> 0 . END=10004111 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
732 |
20 10004112 . C <*> 0 . END=10004112 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
733 |
20 10004113 . T <*> 0 . END=10004113 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 |
|
|
734 |
20 10004114 . C G,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:36:15:13,2,0:0.133333,0:0,36,41,990,990,990 |
|
|
735 |
20 10004115 . A <*> 0 . END=10004115 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
736 |
20 10004116 . G <*> 0 . END=10004116 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
737 |
20 10004117 . G <*> 0 . END=10004117 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
738 |
20 10004118 . A <*> 0 . END=10004119 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
739 |
20 10004120 . G <*> 0 . END=10004120 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
740 |
20 10004121 . C <*> 0 . END=10004121 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
741 |
20 10004122 . T <*> 0 . END=10004122 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
742 |
20 10004123 . G <*> 0 . END=10004125 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
743 |
20 10004126 . G <*> 0 . END=10004126 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
744 |
20 10004127 . C <*> 0 . END=10004127 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
745 |
20 10004128 . AG A,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:28:18:15,2,0:0.111111,0:0,29,33,990,990,990 |
|
|
746 |
20 10004130 . G <*> 0 . END=10004131 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
747 |
20 10004132 . G <*> 0 . END=10004132 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
748 |
20 10004133 . A <*> 0 . END=10004133 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
749 |
20 10004134 . A <*> 0 . END=10004134 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
750 |
20 10004135 . T <*> 0 . END=10004135 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
751 |
20 10004136 . C <*> 0 . END=10004137 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
752 |
20 10004138 . C <*> 0 . END=10004138 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
753 |
20 10004139 . T <*> 0 . END=10004140 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
754 |
20 10004141 . G <*> 0 . END=10004143 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
755 |
20 10004144 . C <*> 0 . END=10004144 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
756 |
20 10004145 . C <*> 0 . END=10004146 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
757 |
20 10004147 . A G,<*> 27.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:15:0,15,0:1,0:27,0,8,990,990,990 |
|
|
758 |
20 10004148 . G <*> 0 . END=10004148 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
759 |
20 10004149 . G <*> 0 . END=10004149 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
760 |
20 10004150 . A <*> 0 . END=10004150 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
761 |
20 10004151 . G <*> 0 . END=10004152 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
762 |
20 10004153 . C <*> 0 . END=10004153 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
763 |
20 10004154 . G <*> 0 . END=10004154 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
764 |
20 10004155 . G <*> 0 . END=10004155 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
765 |
20 10004156 . A <*> 0 . END=10004156 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
766 |
20 10004157 . G <*> 0 . END=10004157 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
767 |
20 10004158 . G <*> 0 . END=10004158 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
768 |
20 10004159 . T <*> 0 . END=10004159 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 |
|
|
769 |
20 10004160 . T <*> 0 . END=10004160 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
770 |
20 10004161 . G <*> 0 . END=10004161 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
771 |
20 10004162 . C <*> 0 . END=10004162 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
772 |
20 10004163 . A <*> 0 . END=10004163 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
773 |
20 10004164 . G <*> 0 . END=10004164 GT:GQ:MIN_DP:PL ./.:0:13:20,0,290 |
|
|
774 |
20 10004165 . T <*> 0 . END=10004166 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
775 |
20 10004167 . A <*> 0 . END=10004167 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 |
|
|
776 |
20 10004168 . G <*> 0 . END=10004168 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 |
|
|
777 |
20 10004169 . C <*> 0 . END=10004170 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
778 |
20 10004171 . G <*> 0 . END=10004171 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
779 |
20 10004172 . A <*> 0 . END=10004172 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
780 |
20 10004173 . G <*> 0 . END=10004173 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 |
|
|
781 |
20 10004174 . A <*> 0 . END=10004174 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
782 |
20 10004175 . T <*> 0 . END=10004175 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
783 |
20 10004176 . C <*> 0 . END=10004176 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
784 |
20 10004177 . A <*> 0 . END=10004177 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 |
|
|
785 |
20 10004178 . C <*> 0 . END=10004178 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
786 |
20 10004179 . G <*> 0 . END=10004180 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
787 |
20 10004181 . C <*> 0 . END=10004181 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
788 |
20 10004182 . A <*> 0 . END=10004182 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
789 |
20 10004183 . C <*> 0 . END=10004184 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
790 |
20 10004185 . G <*> 0 . END=10004185 GT:GQ:MIN_DP:PL ./.:0:13:20,0,290 |
|
|
791 |
20 10004186 . C <*> 0 . END=10004186 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
792 |
20 10004187 . A C,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:27:16:14,2,0:0.125,0:0,26,42,990,990,990 |
|
|
793 |
20 10004188 . C <*> 0 . END=10004188 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
794 |
20 10004189 . T <*> 0 . END=10004189 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
795 |
20 10004190 . C <*> 0 . END=10004190 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
796 |
20 10004191 . C <*> 0 . END=10004191 GT:GQ:MIN_DP:PL ./.:0:14:17,0,317 |
|
|
797 |
20 10004192 . AG A,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:26:16:14,2,0:0.125,0:0,25,38,990,990,990 |
|
|
798 |
20 10004193 . G T,<*> 29.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:14:5,8,0:0.571429,0:29,0,34,990,990,990 |
|
|
799 |
20 10004194 . C <*> 0 . END=10004194 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
800 |
20 10004195 . C <*> 0 . END=10004195 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
801 |
20 10004196 . T <*> 0 . END=10004196 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
802 |
20 10004197 . G <*> 0 . END=10004197 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
803 |
20 10004198 . G <*> 0 . END=10004198 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
804 |
20 10004199 . C <*> 0 . END=10004199 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
805 |
20 10004200 . C <*> 0 . END=10004200 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 |
|
|
806 |
20 10004201 . G <*> 0 . END=10004201 GT:GQ:MIN_DP:PL ./.:0:14:17,0,317 |
|
|
807 |
20 10004202 . A C,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:33:16:14,2,0:0.125,0:0,33,44,990,990,990 |
|
|
808 |
20 10004203 . C A,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:42:13:11,2,0:0.153846,0:0,43,46,990,990,990 |
|
|
809 |
20 10004204 . A <*> 0 . END=10004204 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
810 |
20 10004205 . G <*> 0 . END=10004205 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
811 |
20 10004206 . A <*> 0 . END=10004206 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
812 |
20 10004207 . G <*> 0 . END=10004207 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
813 |
20 10004208 . T <*> 0 . END=10004208 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 |
|
|
814 |
20 10004209 . G <*> 0 . END=10004209 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
815 |
20 10004210 . A <*> 0 . END=10004212 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 |
|
|
816 |
20 10004213 . T <*> 0 . END=10004214 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 |
|
|
817 |
20 10004215 . C <*> 0 . END=10004215 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 |
|
|
818 |
20 10004216 . T <*> 0 . END=10004216 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
819 |
20 10004217 . G <*> 0 . END=10004217 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 |
|
|
820 |
20 10004218 . T <*> 0 . END=10004218 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
821 |
20 10004219 . C <*> 0 . END=10004219 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 |
|
|
822 |
20 10004220 . T <*> 0 . END=10004220 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
823 |
20 10004221 . C CA,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:32:16:14,2,0:0.125,0:0,32,41,990,990,990 |
|
|
824 |
20 10004222 . C CA,<*> 1.5 RefCall . GT:GQ:DP:AD:VAF:PL ./.:5:17:11,1,0:0.0588235,0:0,3,16,990,990,990 |
|
|
825 |
20 10004223 . A AG,<*> 18.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:17:9,7,0:0.411765,0:18,0,22,990,990,990 |
|
|
826 |
20 10004224 . A <*> 0 . END=10004224 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
827 |
20 10004225 . A <*> 0 . END=10004228 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
828 |
20 10004229 . A <*> 0 . END=10004229 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
829 |
20 10004230 . A <*> 0 . END=10004235 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
830 |
20 10004236 . A <*> 0 . END=10004239 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
831 |
20 10004240 . A <*> 0 . END=10004241 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
832 |
20 10004242 . A <*> 0 . END=10004243 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
833 |
20 10004244 . G <*> 0 . END=10004244 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 |
|
|
834 |
20 10004245 . T <*> 0 . END=10004249 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
835 |
20 10004250 . A <*> 0 . END=10004251 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
836 |
20 10004252 . T <*> 0 . END=10004252 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
837 |
20 10004253 . A <*> 0 . END=10004253 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 |
|
|
838 |
20 10004254 . T <*> 0 . END=10004257 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
839 |
20 10004258 . T <*> 0 . END=10004270 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
840 |
20 10004271 . C <*> 0 . END=10004273 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
841 |
20 10004274 . T <*> 0 . END=10004276 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
842 |
20 10004277 . G <*> 0 . END=10004277 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
843 |
20 10004278 . T <*> 0 . END=10004282 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
844 |
20 10004283 . T <*> 0 . END=10004289 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
845 |
20 10004290 . T <*> 0 . END=10004321 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
846 |
20 10004322 . A <*> 0 . END=10004322 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
847 |
20 10004323 . T <*> 0 . END=10004333 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
848 |
20 10004334 . G <*> 0 . END=10004334 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
849 |
20 10004335 . C <*> 0 . END=10004350 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
850 |
20 10004351 . C G,<*> 21.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:20:0,20,0:1,0:19,2,0,990,990,990 |
|
|
851 |
20 10004352 . A <*> 0 . END=10004384 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
852 |
20 10004385 . T <*> 0 . END=10004385 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
853 |
20 10004386 . A <*> 0 . END=10004388 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
854 |
20 10004389 . T G,<*> 26 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:22:0,22,0:1,0:23,0,0,990,990,990 |
|
|
855 |
20 10004390 . G <*> 0 . END=10004393 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
856 |
20 10004394 . C <*> 0 . END=10004394 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
857 |
20 10004395 . A <*> 0 . END=10004439 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 |
|
|
858 |
20 10004440 . T <*> 0 . END=10004440 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
859 |
20 10004441 . C <*> 0 . END=10004464 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
860 |
20 10004465 . C <*> 0 . END=10004465 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
861 |
20 10004466 . T <*> 0 . END=10004575 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
862 |
20 10004576 . T <*> 0 . END=10004576 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
863 |
20 10004577 . T <*> 0 . END=10004580 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
864 |
20 10004581 . T <*> 0 . END=10004581 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
865 |
20 10004582 . T <*> 0 . END=10004608 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
866 |
20 10004609 . C <*> 0 . END=10004609 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
867 |
20 10004610 . A C,<*> 27.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:18:0,18,0:1,0:25,4,0,990,990,990 |
|
|
868 |
20 10004611 . C <*> 0 . END=10004639 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
869 |
20 10004640 . T <*> 0 . END=10004640 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
870 |
20 10004641 . T <*> 0 . END=10004680 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 |
|
|
871 |
20 10004681 . A <*> 0 . END=10004681 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
872 |
20 10004682 . G <*> 0 . END=10004724 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
873 |
20 10004725 . A G,<*> 9.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:21:7,14,0:0.666667,0:9,0,18,990,990,990 |
|
|
874 |
20 10004726 . T <*> 0 . END=10004767 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 |
|
|
875 |
20 10004768 . C <*> 0 . END=10004768 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
876 |
20 10004769 . TAAAACTATGC T,<*> 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:22:8,14,0:0.636364,0:34,0,37,990,990,990 |
|
|
877 |
20 10004780 . A <*> 0 . END=10004802 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 |
|
|
878 |
20 10004803 . T <*> 0 . END=10004803 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
879 |
20 10004804 . T <*> 0 . END=10004805 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
880 |
20 10004806 . T <*> 0 . END=10004806 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
881 |
20 10004807 . G <*> 0 . END=10004856 GT:GQ:MIN_DP:PL 0/0:48:22:0,48,719 |
|
|
882 |
20 10004857 . C <*> 0 . END=10004857 GT:GQ:MIN_DP:PL 0/0:36:32:0,36,839 |
|
|
883 |
20 10004858 . A <*> 0 . END=10004873 GT:GQ:MIN_DP:PL 0/0:50:29:0,96,959 |
|
|
884 |
20 10004874 . A C,<*> 32.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:32:0,32,0:1,0:32,15,0,990,990,990 |
|
|
885 |
20 10004875 . T <*> 0 . END=10004886 GT:GQ:MIN_DP:PL 0/0:50:30:0,96,959 |
|
|
886 |
20 10004887 . A G,<*> 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:30:16,14,0:0.466667,0:38,0,42,990,990,990 |
|
|
887 |
20 10004888 . A <*> 0 . END=10004942 GT:GQ:MIN_DP:PL 0/0:50:23:0,93,929 |
|
|
888 |
20 10004943 . C <*> 0 . END=10004943 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
889 |
20 10004944 . T <*> 0 . END=10004946 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 |
|
|
890 |
20 10004947 . G <*> 0 . END=10004947 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
891 |
20 10004948 . A <*> 0 . END=10004950 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
892 |
20 10004951 . G <*> 0 . END=10004951 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
893 |
20 10004952 . T <*> 0 . END=10004963 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
894 |
20 10004964 . T <*> 0 . END=10004964 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
895 |
20 10004965 . A <*> 0 . END=10004999 GT:GQ:MIN_DP:PL 0/0:50:23:0,78,779 |
|
|
896 |
20 10005000 . G <*> 0 . END=10005009 GT:GQ:MIN_DP:PL 0/0:50:25:0,81,809 |
|
|
897 |
20 10005010 . C T,<*> 30.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:25:0,25,0:1,0:30,17,0,990,990,990 |
|
|
898 |
20 10005011 . G <*> 0 . END=10005034 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 |
|
|
899 |
20 10005035 . C <*> 0 . END=10005035 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
900 |
20 10005036 . A <*> 0 . END=10005039 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
901 |
20 10005040 . G <*> 0 . END=10005040 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
902 |
20 10005041 . T <*> 0 . END=10005041 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 |
|
|
903 |
20 10005042 . C <*> 0 . END=10005042 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
904 |
20 10005043 . A <*> 0 . END=10005043 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
905 |
20 10005044 . T <*> 0 . END=10005044 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
906 |
20 10005045 . G <*> 0 . END=10005087 GT:GQ:MIN_DP:PL 0/0:48:25:0,48,719 |
|
|
907 |
20 10005088 . C <*> 0 . END=10005088 GT:GQ:MIN_DP:PL 0/0:36:32:0,36,839 |
|
|
908 |
20 10005089 . T <*> 0 . END=10005164 GT:GQ:MIN_DP:PL 0/0:50:24:0,93,929 |
|
|
909 |
20 10005165 . C <*> 0 . END=10005165 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
910 |
20 10005166 . A <*> 0 . END=10005208 GT:GQ:MIN_DP:PL 0/0:50:25:0,78,779 |
|
|
911 |
20 10005209 . T <*> 0 . END=10005209 GT:GQ:MIN_DP:PL 0/0:33:31:0,33,809 |
|
|
912 |
20 10005210 . A <*> 0 . END=10005346 GT:GQ:MIN_DP:PL 0/0:50:23:0,90,899 |
|
|
913 |
20 10005347 . T <*> 0 . END=10005347 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
914 |
20 10005348 . A <*> 0 . END=10005361 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 |
|
|
915 |
20 10005362 . G <*> 0 . END=10005362 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
916 |
20 10005363 . C <*> 0 . END=10005395 GT:GQ:MIN_DP:PL 0/0:50:17:0,75,749 |
|
|
917 |
20 10005396 . G <*> 0 . END=10005396 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
918 |
20 10005397 . T <*> 0 . END=10005421 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
919 |
20 10005422 . A <*> 0 . END=10005422 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
920 |
20 10005423 . A <*> 0 . END=10005426 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
921 |
20 10005427 . C T,<*> 26.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:20:0,20,0:1,0:26,13,0,990,990,990 |
|
|
922 |
20 10005428 . A <*> 0 . END=10005433 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
923 |
20 10005434 . A <*> 0 . END=10005435 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
924 |
20 10005436 . C <*> 0 . END=10005498 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 |
|
|
925 |
20 10005499 . A G,<*> 35 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:25:0,25,0:1,0:34,18,0,990,990,990 |
|
|
926 |
20 10005500 . T <*> 0 . END=10005501 GT:GQ:MIN_DP:PL 0/0:50:26:0,78,779 |
|
|
927 |
20 10005502 . T <*> 0 . END=10005502 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
928 |
20 10005503 . A <*> 0 . END=10005586 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
929 |
20 10005587 . A G,<*> 14.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:34:20,14,0:0.411765,0:14,0,21,990,990,990 |
|
|
930 |
20 10005588 . A <*> 0 . END=10005722 GT:GQ:MIN_DP:PL 0/0:50:26:0,102,1019 |
|
|
931 |
20 10005723 . A G,<*> 38.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:32:0,32,0:1,0:38,16,0,990,990,990 |
|
|
932 |
20 10005724 . A <*> 0 . END=10005999 GT:GQ:MIN_DP:PL 0/0:50:29:0,96,959 |
|
|
933 |
20 10006000 . G <*> 0 . END=10006047 GT:GQ:MIN_DP:PL 0/0:48:25:0,48,719 |
|
|
934 |
20 10006048 . C <*> 0 . END=10006048 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
935 |
20 10006049 . T <*> 0 . END=10006064 GT:GQ:MIN_DP:PL 0/0:50:22:0,72,719 |
|
|
936 |
20 10006065 . T <*> 0 . END=10006065 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
937 |
20 10006066 . A <*> 0 . END=10006094 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
938 |
20 10006095 . A <*> 0 . END=10006101 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 |
|
|
939 |
20 10006102 . T <*> 0 . END=10006117 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
940 |
20 10006118 . G <*> 0 . END=10006118 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
941 |
20 10006119 . T <*> 0 . END=10006149 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
942 |
20 10006150 . G <*> 0 . END=10006151 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
943 |
20 10006152 . C <*> 0 . END=10006163 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
944 |
20 10006164 . G <*> 0 . END=10006166 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
945 |
20 10006167 . A <*> 0 . END=10006263 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 |
|
|
946 |
20 10006264 . T <*> 0 . END=10006264 GT:GQ:MIN_DP:PL ./.:0:31:26,0,716 |
|
|
947 |
20 10006265 . A <*> 0 . END=10006274 GT:GQ:MIN_DP:PL 0/0:50:31:0,93,929 |
|
|
948 |
20 10006275 . G <*> 0 . END=10006275 GT:GQ:MIN_DP:PL 0/0:39:33:0,39,869 |
|
|
949 |
20 10006276 . G <*> 0 . END=10006277 GT:GQ:MIN_DP:PL 0/0:50:30:0,66,899 |
|
|
950 |
20 10006278 . A <*> 0 . END=10006278 GT:GQ:MIN_DP:PL 0/0:30:30:0,30,779 |
|
|
951 |
20 10006279 . A <*> 0 . END=10006290 GT:GQ:MIN_DP:PL 0/0:50:27:0,90,899 |
|
|
952 |
20 10006291 . G A,<*> 10 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:29:17,12,0:0.413793,0:9,0,22,990,990,990 |
|
|
953 |
20 10006292 . A <*> 0 . END=10006303 GT:GQ:MIN_DP:PL 0/0:50:27:0,87,869 |
|
|
954 |
20 10006304 . C <*> 0 . END=10006304 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
955 |
20 10006305 . C <*> 0 . END=10006308 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
956 |
20 10006309 . T <*> 0 . END=10006309 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
957 |
20 10006310 . A <*> 0 . END=10006357 GT:GQ:MIN_DP:PL 0/0:48:25:0,48,719 |
|
|
958 |
20 10006358 . A <*> 0 . END=10006358 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
959 |
20 10006359 . A <*> 0 . END=10006383 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
960 |
20 10006384 . T <*> 0 . END=10006384 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
961 |
20 10006385 . A <*> 0 . END=10006403 GT:GQ:MIN_DP:PL 0/0:50:22:0,75,749 |
|
|
962 |
20 10006404 . A C,<*> 30.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:24:1,23,0:0.958333,0:29,4,0,990,990,990 |
|
|
963 |
20 10006405 . C <*> 0 . END=10006405 GT:GQ:MIN_DP:PL 0/0:12:24:0,12,599 |
|
|
964 |
20 10006406 . A <*> 0 . END=10006410 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
965 |
20 10006411 . T <*> 0 . END=10006411 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 |
|
|
966 |
20 10006412 . T <*> 0 . END=10006412 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
967 |
20 10006413 . C <*> 0 . END=10006460 GT:GQ:MIN_DP:PL 0/0:50:19:0,72,719 |
|
|
968 |
20 10006461 . T <*> 0 . END=10006461 GT:GQ:MIN_DP:PL 0/0:30:30:0,30,779 |
|
|
969 |
20 10006462 . A <*> 0 . END=10006605 GT:GQ:MIN_DP:PL 0/0:50:25:0,90,899 |
|
|
970 |
20 10006606 . G <*> 0 . END=10006606 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
971 |
20 10006607 . A <*> 0 . END=10006615 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
972 |
20 10006616 . T <*> 0 . END=10006616 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
973 |
20 10006617 . A <*> 0 . END=10006621 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
974 |
20 10006622 . G <*> 0 . END=10006622 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
975 |
20 10006623 . A <*> 0 . END=10006650 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
976 |
20 10006651 . T <*> 0 . END=10006651 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
977 |
20 10006652 . A <*> 0 . END=10006681 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
978 |
20 10006682 . T A,<*> 32.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:23:0,23,0:1,0:32,11,0,990,990,990 |
|
|
979 |
20 10006683 . A <*> 0 . END=10006683 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
980 |
20 10006684 . G <*> 0 . END=10006684 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
981 |
20 10006685 . C <*> 0 . END=10006689 GT:GQ:MIN_DP:PL 0/0:50:22:0,72,719 |
|
|
982 |
20 10006690 . C <*> 0 . END=10006690 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
983 |
20 10006691 . A <*> 0 . END=10006710 GT:GQ:MIN_DP:PL 0/0:50:20:0,69,689 |
|
|
984 |
20 10006711 . G <*> 0 . END=10006711 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
985 |
20 10006712 . G <*> 0 . END=10006716 GT:GQ:MIN_DP:PL 0/0:50:20:0,69,689 |
|
|
986 |
20 10006717 . A <*> 0 . END=10006717 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
987 |
20 10006718 . A <*> 0 . END=10006726 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
988 |
20 10006727 . G <*> 0 . END=10006727 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
989 |
20 10006728 . G <*> 0 . END=10006789 GT:GQ:MIN_DP:PL 0/0:48:23:0,48,719 |
|
|
990 |
20 10006790 . T <*> 0 . END=10006790 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
991 |
20 10006791 . G <*> 0 . END=10006816 GT:GQ:MIN_DP:PL 0/0:48:21:0,48,719 |
|
|
992 |
20 10006817 . A <*> 0 . END=10006817 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
993 |
20 10006818 . A <*> 0 . END=10006818 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
994 |
20 10006819 . AAAAC A,<*> 33.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:25:0,25,0:1,0:33,14,0,990,990,990 |
|
|
995 |
20 10006824 . A <*> 0 . END=10006824 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
996 |
20 10006825 . A <*> 0 . END=10006839 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
997 |
20 10006840 . A <*> 0 . END=10006840 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
998 |
20 10006841 . A <*> 0 . END=10006847 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
999 |
20 10006848 . A <*> 0 . END=10006848 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1000 |
20 10006849 . A <*> 0 . END=10006999 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
1001 |
20 10007000 . T <*> 0 . END=10007149 GT:GQ:MIN_DP:PL 0/0:50:27:0,105,1049 |
|
|
1002 |
20 10007150 . G C,<*> 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:32:13,19,0:0.59375,0:38,0,43,990,990,990 |
|
|
1003 |
20 10007151 . G <*> 0 . END=10007174 GT:GQ:MIN_DP:PL 0/0:50:29:0,93,929 |
|
|
1004 |
20 10007175 . C T,<*> 13.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:33:17,16,0:0.484848,0:13,0,24,990,990,990 |
|
|
1005 |
20 10007176 . T <*> 0 . END=10007246 GT:GQ:MIN_DP:PL 0/0:50:21:0,99,989 |
|
|
1006 |
20 10007247 . G <*> 0 . END=10007247 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1007 |
20 10007248 . C <*> 0 . END=10007265 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
1008 |
20 10007266 . G <*> 0 . END=10007266 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1009 |
20 10007267 . T <*> 0 . END=10007302 GT:GQ:MIN_DP:PL 0/0:50:22:0,75,749 |
|
|
1010 |
20 10007303 . G <*> 0 . END=10007303 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1011 |
20 10007304 . A <*> 0 . END=10007351 GT:GQ:MIN_DP:PL 0/0:50:18:0,69,689 |
|
|
1012 |
20 10007352 . C T,<*> 32.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:26:0,26,0:1,0:32,15,0,990,990,990 |
|
|
1013 |
20 10007353 . A <*> 0 . END=10007497 GT:GQ:MIN_DP:PL 0/0:50:23:0,78,779 |
|
|
1014 |
20 10007498 . T <*> 0 . END=10007498 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1015 |
20 10007499 . T <*> 0 . END=10007514 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 |
|
|
1016 |
20 10007515 . G <*> 0 . END=10007515 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1017 |
20 10007516 . T <*> 0 . END=10007530 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1018 |
20 10007531 . A G,<*> 30.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:21:0,21,0:1,0:29,6,0,990,990,990 |
|
|
1019 |
20 10007532 . G <*> 0 . END=10007544 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1020 |
20 10007545 . G <*> 0 . END=10007545 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1021 |
20 10007546 . A <*> 0 . END=10007548 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 |
|
|
1022 |
20 10007549 . A <*> 0 . END=10007549 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1023 |
20 10007550 . A <*> 0 . END=10007589 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 |
|
|
1024 |
20 10007590 . A <*> 0 . END=10007590 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1025 |
20 10007591 . C <*> 0 . END=10007650 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1026 |
20 10007651 . A <*> 0 . END=10007651 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1027 |
20 10007652 . T <*> 0 . END=10007652 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1028 |
20 10007653 . A <*> 0 . END=10007653 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1029 |
20 10007654 . T <*> 0 . END=10007654 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1030 |
20 10007655 . G <*> 0 . END=10007655 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
1031 |
20 10007656 . C <*> 0 . END=10007660 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1032 |
20 10007661 . A <*> 0 . END=10007661 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
1033 |
20 10007662 . C <*> 0 . END=10007666 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1034 |
20 10007667 . A <*> 0 . END=10007667 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1035 |
20 10007668 . G <*> 0 . END=10007668 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1036 |
20 10007669 . C <*> 0 . END=10007669 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1037 |
20 10007670 . A <*> 0 . END=10007678 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1038 |
20 10007679 . G <*> 0 . END=10007679 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1039 |
20 10007680 . C <*> 0 . END=10007691 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
1040 |
20 10007692 . C <*> 0 . END=10007692 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1041 |
20 10007693 . C <*> 0 . END=10007707 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1042 |
20 10007708 . T <*> 0 . END=10007708 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1043 |
20 10007709 . T <*> 0 . END=10007710 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1044 |
20 10007711 . G <*> 0 . END=10007711 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1045 |
20 10007712 . A <*> 0 . END=10007731 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1046 |
20 10007732 . C <*> 0 . END=10007732 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1047 |
20 10007733 . A <*> 0 . END=10007743 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1048 |
20 10007744 . T <*> 0 . END=10007744 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1049 |
20 10007745 . T <*> 0 . END=10007749 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1050 |
20 10007750 . C <*> 0 . END=10007750 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1051 |
20 10007751 . T <*> 0 . END=10007792 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 |
|
|
1052 |
20 10007793 . C <*> 0 . END=10007793 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1053 |
20 10007794 . A <*> 0 . END=10007795 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
1054 |
20 10007796 . C <*> 0 . END=10007796 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1055 |
20 10007797 . T <*> 0 . END=10007800 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 |
|
|
1056 |
20 10007801 . A <*> 0 . END=10007801 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1057 |
20 10007802 . G <*> 0 . END=10007807 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
1058 |
20 10007808 . A <*> 0 . END=10007808 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1059 |
20 10007809 . A <*> 0 . END=10007839 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 |
|
|
1060 |
20 10007840 . T <*> 0 . END=10007840 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1061 |
20 10007841 . T <*> 0 . END=10007940 GT:GQ:MIN_DP:PL 0/0:50:17:0,75,749 |
|
|
1062 |
20 10007941 . C <*> 0 . END=10007941 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 |
|
|
1063 |
20 10007942 . T <*> 0 . END=10007949 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 |
|
|
1064 |
20 10007950 . G <*> 0 . END=10007950 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1065 |
20 10007951 . A <*> 0 . END=10007953 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
1066 |
20 10007954 . G <*> 0 . END=10007954 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1067 |
20 10007955 . T <*> 0 . END=10007979 GT:GQ:MIN_DP:PL 0/0:48:22:0,48,719 |
|
|
1068 |
20 10007980 . A C,<*> 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:21:1,20,0:0.952381,0:21,0,7,990,990,990 |
|
|
1069 |
20 10007981 . A <*> 0 . END=10007988 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1070 |
20 10007989 . C <*> 0 . END=10007989 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1071 |
20 10007990 . T <*> 0 . END=10007999 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 |
|
|
1072 |
20 10008000 . G <*> 0 . END=10008002 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
1073 |
20 10008003 . G <*> 0 . END=10008003 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1074 |
20 10008004 . G <*> 0 . END=10008010 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
1075 |
20 10008011 . A <*> 0 . END=10008011 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1076 |
20 10008012 . G <*> 0 . END=10008013 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
1077 |
20 10008014 . C <*> 0 . END=10008014 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1078 |
20 10008015 . C <*> 0 . END=10008015 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 |
|
|
1079 |
20 10008016 . A <*> 0 . END=10008028 GT:GQ:MIN_DP:PL 0/0:48:26:0,48,719 |
|
|
1080 |
20 10008029 . T TA,<*> 31.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:28:1,23,0:0.821429,0:30,5,0,990,990,990 |
|
|
1081 |
20 10008030 . A <*> 0 . END=10008058 GT:GQ:MIN_DP:PL 0/0:50:25:0,84,839 |
|
|
1082 |
20 10008059 . T <*> 0 . END=10008059 GT:GQ:MIN_DP:PL 0/0:27:29:0,27,749 |
|
|
1083 |
20 10008060 . A <*> 0 . END=10008065 GT:GQ:MIN_DP:PL 0/0:50:28:0,87,869 |
|
|
1084 |
20 10008066 . T <*> 0 . END=10008066 GT:GQ:MIN_DP:PL 0/0:21:27:0,21,689 |
|
|
1085 |
20 10008067 . A <*> 0 . END=10008073 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
1086 |
20 10008074 . C <*> 0 . END=10008074 GT:GQ:MIN_DP:PL 0/0:24:28:0,24,719 |
|
|
1087 |
20 10008075 . A <*> 0 . END=10008094 GT:GQ:MIN_DP:PL 0/0:48:25:0,48,719 |
|
|
1088 |
20 10008095 . A <*> 0 . END=10008095 GT:GQ:MIN_DP:PL 0/0:24:28:0,24,719 |
|
|
1089 |
20 10008096 . T <*> 0 . END=10008096 GT:GQ:MIN_DP:PL 0/0:48:26:0,48,719 |
|
|
1090 |
20 10008097 . C <*> 0 . END=10008097 GT:GQ:MIN_DP:PL 0/0:21:27:0,21,689 |
|
|
1091 |
20 10008098 . A <*> 0 . END=10008145 GT:GQ:MIN_DP:PL 0/0:48:23:0,48,719 |
|
|
1092 |
20 10008146 . TA T,<*> 37.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:29:1,27,0:0.931035,0:37,20,0,990,990,990 |
|
|
1093 |
20 10008148 . A <*> 0 . END=10008220 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
1094 |
20 10008221 . T C,<*> 31.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:24:1,23,0:0.958333,0:30,4,0,990,990,990 |
|
|
1095 |
20 10008222 . T <*> 0 . END=10008283 GT:GQ:MIN_DP:PL 0/0:50:19:0,75,749 |
|
|
1096 |
20 10008284 . A <*> 0 . END=10008284 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1097 |
20 10008285 . A <*> 0 . END=10008292 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1098 |
20 10008293 . T <*> 0 . END=10008293 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1099 |
20 10008294 . A <*> 0 . END=10008310 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 |
|
|
1100 |
20 10008311 . A <*> 0 . END=10008311 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1101 |
20 10008312 . G <*> 0 . END=10008331 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1102 |
20 10008332 . G <*> 0 . END=10008332 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1103 |
20 10008333 . A <*> 0 . END=10008365 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
1104 |
20 10008366 . T <*> 0 . END=10008366 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 |
|
|
1105 |
20 10008367 . A <*> 0 . END=10008372 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
1106 |
20 10008373 . C <*> 0 . END=10008373 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1107 |
20 10008374 . A <*> 0 . END=10008377 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 |
|
|
1108 |
20 10008378 . G <*> 0 . END=10008378 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1109 |
20 10008379 . A <*> 0 . END=10008382 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 |
|
|
1110 |
20 10008383 . A <*> 0 . END=10008383 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1111 |
20 10008384 . A <*> 0 . END=10008457 GT:GQ:MIN_DP:PL 0/0:48:23:0,48,719 |
|
|
1112 |
20 10008458 . T G,<*> 27.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:26:0,26,0:1,0:27,11,0,990,990,990 |
|
|
1113 |
20 10008459 . A <*> 0 . END=10008473 GT:GQ:MIN_DP:PL 0/0:50:25:0,78,779 |
|
|
1114 |
20 10008474 . C <*> 0 . END=10008474 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1115 |
20 10008475 . A <*> 0 . END=10008558 GT:GQ:MIN_DP:PL 0/0:50:21:0,75,749 |
|
|
1116 |
20 10008559 . G <*> 0 . END=10008559 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1117 |
20 10008560 . T <*> 0 . END=10008583 GT:GQ:MIN_DP:PL 0/0:50:17:0,69,689 |
|
|
1118 |
20 10008584 . G <*> 0 . END=10008584 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1119 |
20 10008585 . A <*> 0 . END=10008592 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
1120 |
20 10008593 . C <*> 0 . END=10008593 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1121 |
20 10008594 . T <*> 0 . END=10008598 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1122 |
20 10008599 . G <*> 0 . END=10008599 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1123 |
20 10008600 . C <*> 0 . END=10008608 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1124 |
20 10008609 . T <*> 0 . END=10008609 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1125 |
20 10008610 . A <*> 0 . END=10008613 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 |
|
|
1126 |
20 10008614 . C <*> 0 . END=10008614 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1127 |
20 10008615 . T <*> 0 . END=10008616 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1128 |
20 10008617 . A <*> 0 . END=10008627 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
1129 |
20 10008628 . T <*> 0 . END=10008628 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1130 |
20 10008629 . A <*> 0 . END=10008632 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
1131 |
20 10008633 . G <*> 0 . END=10008633 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1132 |
20 10008634 . G <*> 0 . END=10008634 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1133 |
20 10008635 . C <*> 0 . END=10008638 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1134 |
20 10008639 . G <*> 0 . END=10008639 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1135 |
20 10008640 . T <*> 0 . END=10008646 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 |
|
|
1136 |
20 10008647 . G <*> 0 . END=10008647 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1137 |
20 10008648 . C <*> 0 . END=10008682 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
1138 |
20 10008683 . G <*> 0 . END=10008683 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1139 |
20 10008684 . G <*> 0 . END=10008688 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1140 |
20 10008689 . T <*> 0 . END=10008689 GT:GQ:MIN_DP:PL ./.:0:23:20,0,530 |
|
|
1141 |
20 10008690 . G <*> 0 . END=10008691 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1142 |
20 10008692 . A <*> 0 . END=10008692 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1143 |
20 10008693 . T <*> 0 . END=10008697 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 |
|
|
1144 |
20 10008698 . A <*> 0 . END=10008698 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1145 |
20 10008699 . G <*> 0 . END=10008700 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 |
|
|
1146 |
20 10008701 . T <*> 0 . END=10008702 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1147 |
20 10008703 . A <*> 0 . END=10008705 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 |
|
|
1148 |
20 10008706 . A <*> 0 . END=10008706 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1149 |
20 10008707 . G <*> 0 . END=10008708 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
1150 |
20 10008709 . T <*> 0 . END=10008709 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1151 |
20 10008710 . C <*> 0 . END=10008712 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1152 |
20 10008713 . G <*> 0 . END=10008713 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1153 |
20 10008714 . A <*> 0 . END=10008714 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1154 |
20 10008715 . C <*> 0 . END=10008715 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1155 |
20 10008716 . C <*> 0 . END=10008717 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
1156 |
20 10008718 . T <*> 0 . END=10008718 GT:GQ:MIN_DP:PL 0/0:9:23:0,9,569 |
|
|
1157 |
20 10008719 . C <*> 0 . END=10008724 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1158 |
20 10008725 . T <*> 0 . END=10008725 GT:GQ:MIN_DP:PL 0/0:9:23:0,9,569 |
|
|
1159 |
20 10008726 . A <*> 0 . END=10008727 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1160 |
20 10008728 . C <*> 0 . END=10008728 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1161 |
20 10008729 . A <*> 0 . END=10008729 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1162 |
20 10008730 . C <*> 0 . END=10008730 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1163 |
20 10008731 . A <*> 0 . END=10008734 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1164 |
20 10008735 . A <*> 0 . END=10008735 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1165 |
20 10008736 . A <*> 0 . END=10008736 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1166 |
20 10008737 . A <*> 0 . END=10008737 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1167 |
20 10008738 . C <*> 0 . END=10008741 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1168 |
20 10008742 . G T,<*> 32.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:21:6,15,0:0.714286,0:32,0,34,990,990,990 |
|
|
1169 |
20 10008743 . T <*> 0 . END=10008749 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 |
|
|
1170 |
20 10008750 . T <*> 0 . END=10008750 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1171 |
20 10008751 . A <*> 0 . END=10008755 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1172 |
20 10008756 . T <*> 0 . END=10008756 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1173 |
20 10008757 . A <*> 0 . END=10008757 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1174 |
20 10008758 . C CA,<*> 25.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:20:1,19,0:0.95,0:24,6,0,990,990,990 |
|
|
1175 |
20 10008759 . A <*> 0 . END=10008779 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1176 |
20 10008780 . G <*> 0 . END=10008780 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1177 |
20 10008781 . G <*> 0 . END=10008785 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1178 |
20 10008786 . G <*> 0 . END=10008786 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
1179 |
20 10008787 . T <*> 0 . END=10008799 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
1180 |
20 10008800 . T <*> 0 . END=10008800 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1181 |
20 10008801 . A <*> 0 . END=10008801 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1182 |
20 10008802 . G <*> 0 . END=10008803 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1183 |
20 10008804 . C <*> 0 . END=10008804 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1184 |
20 10008805 . C <*> 0 . END=10008805 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
1185 |
20 10008806 . C <*> 0 . END=10008806 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1186 |
20 10008807 . A <*> 0 . END=10008812 GT:GQ:MIN_DP:PL 0/0:50:18:0,69,689 |
|
|
1187 |
20 10008813 . T <*> 0 . END=10008813 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1188 |
20 10008814 . C <*> 0 . END=10008820 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1189 |
20 10008821 . C <*> 0 . END=10008821 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1190 |
20 10008822 . T <*> 0 . END=10008889 GT:GQ:MIN_DP:PL 0/0:50:17:0,66,659 |
|
|
1191 |
20 10008890 . C <*> 0 . END=10008890 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1192 |
20 10008891 . C <*> 0 . END=10008902 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1193 |
20 10008903 . C <*> 0 . END=10008903 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1194 |
20 10008904 . A <*> 0 . END=10008919 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
1195 |
20 10008920 . T <*> 0 . END=10008920 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 |
|
|
1196 |
20 10008921 . C CA,<*> 7.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:23:15,4,0:0.173913,0:6,0,21,990,990,990 |
|
|
1197 |
20 10008922 . A <*> 0 . END=10008930 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
1198 |
20 10008931 . A <*> 0 . END=10008932 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1199 |
20 10008933 . A <*> 0 . END=10008946 GT:GQ:MIN_DP:PL 0/0:48:24:0,48,719 |
|
|
1200 |
20 10008947 . T <*> 0 . END=10008947 GT:GQ:MIN_DP:PL 0/0:27:29:0,27,749 |
|
|
1201 |
20 10008948 . TA T,<*> 20.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:30:0,30,0:1,0:18,0,1,990,990,990 |
|
|
1202 |
20 10008950 . A <*> 0 . END=10008951 GT:GQ:MIN_DP:PL 0/0:50:28:0,90,899 |
|
|
1203 |
20 10008952 . CACACACACACA C,CCACACACACA,<*> 31.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:28:0,16,12,0:0.571429,0.428571,0:27,0,18,0,5,31,990,990,990,990 |
|
|
1204 |
20 10008964 . C <*> 0 . END=10008999 GT:GQ:MIN_DP:PL 0/0:50:29:0,87,869 |
|
|
1205 |
20 10009000 . T <*> 0 . END=10009060 GT:GQ:MIN_DP:PL 0/0:50:30:0,96,959 |
|
|
1206 |
20 10009061 . T <*> 0 . END=10009061 GT:GQ:MIN_DP:PL 0/0:42:34:0,42,899 |
|
|
1207 |
20 10009062 . T <*> 0 . END=10009226 GT:GQ:MIN_DP:PL 0/0:50:30:0,105,1049 |
|
|
1208 |
20 10009227 . A G,<*> 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:31:14,17,0:0.548387,0:42,0,42,990,990,990 |
|
|
1209 |
20 10009228 . G <*> 0 . END=10009245 GT:GQ:MIN_DP:PL 0/0:50:29:0,87,869 |
|
|
1210 |
20 10009246 . A G,<*> 40 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:35:0,35,0:1,0:40,25,0,990,990,990 |
|
|
1211 |
20 10009247 . A <*> 0 . END=10009399 GT:GQ:MIN_DP:PL 0/0:50:32:0,108,1079 |
|
|
1212 |
20 10009400 . T A,<*> 30.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:33:0,32,0:0.969697,0:30,10,0,990,990,990 |
|
|
1213 |
20 10009401 . A <*> 0 . END=10009425 GT:GQ:MIN_DP:PL 0/0:50:25:0,99,989 |
|
|
1214 |
20 10009426 . G <*> 0 . END=10009426 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 |
|
|
1215 |
20 10009427 . T <*> 0 . END=10009453 GT:GQ:MIN_DP:PL 0/0:50:20:0,75,749 |
|
|
1216 |
20 10009454 . T <*> 0 . END=10009454 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1217 |
20 10009455 . A <*> 0 . END=10009476 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 |
|
|
1218 |
20 10009477 . T <*> 0 . END=10009477 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1219 |
20 10009478 . G <*> 0 . END=10009511 GT:GQ:MIN_DP:PL 0/0:48:22:0,48,719 |
|
|
1220 |
20 10009512 . C G,<*> 26.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:26:0,26,0:1,0:25,4,0,990,990,990 |
|
|
1221 |
20 10009513 . A <*> 0 . END=10009557 GT:GQ:MIN_DP:PL 0/0:50:20:0,78,779 |
|
|
1222 |
20 10009558 . T <*> 0 . END=10009558 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1223 |
20 10009559 . T <*> 0 . END=10009640 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1224 |
20 10009641 . T <*> 0 . END=10009641 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
1225 |
20 10009642 . A <*> 0 . END=10009648 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1226 |
20 10009649 . G <*> 0 . END=10009649 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
1227 |
20 10009650 . T <*> 0 . END=10009650 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
1228 |
20 10009651 . T <*> 0 . END=10009651 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1229 |
20 10009652 . T <*> 0 . END=10009652 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1230 |
20 10009653 . C <*> 0 . END=10009653 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
1231 |
20 10009654 . A <*> 0 . END=10009655 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1232 |
20 10009656 . G <*> 0 . END=10009656 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
1233 |
20 10009657 . C <*> 0 . END=10009663 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1234 |
20 10009664 . T <*> 0 . END=10009664 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 |
|
|
1235 |
20 10009665 . T <*> 0 . END=10009673 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1236 |
20 10009674 . G <*> 0 . END=10009674 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1237 |
20 10009675 . A <*> 0 . END=10009691 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 |
|
|
1238 |
20 10009692 . T <*> 0 . END=10009692 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1239 |
20 10009693 . A <*> 0 . END=10009707 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1240 |
20 10009708 . C <*> 0 . END=10009708 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
1241 |
20 10009709 . A <*> 0 . END=10009718 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
1242 |
20 10009719 . A G,<*> 26.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:19:0,18,0:0.947368,0:24,0,3,990,990,990 |
|
|
1243 |
20 10009720 . T <*> 0 . END=10009730 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
1244 |
20 10009731 . C <*> 0 . END=10009731 GT:GQ:MIN_DP:PL 0/0:3:20:0,0,479 |
|
|
1245 |
20 10009732 . T <*> 0 . END=10009733 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1246 |
20 10009734 . G <*> 0 . END=10009734 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
1247 |
20 10009735 . C <*> 0 . END=10009753 GT:GQ:MIN_DP:PL 0/0:50:17:0,60,599 |
|
|
1248 |
20 10009754 . A <*> 0 . END=10009754 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1249 |
20 10009755 . G <*> 0 . END=10009778 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 |
|
|
1250 |
20 10009779 . C <*> 0 . END=10009780 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
1251 |
20 10009781 . A <*> 0 . END=10009786 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
1252 |
20 10009787 . T <*> 0 . END=10009787 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
1253 |
20 10009788 . C <*> 0 . END=10009788 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
1254 |
20 10009789 . A <*> 0 . END=10009789 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1255 |
20 10009790 . A <*> 0 . END=10009793 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1256 |
20 10009794 . T <*> 0 . END=10009794 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1257 |
20 10009795 . A G,<*> 18.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:22:0,21,0:0.954545,0:17,0,5,990,990,990 |
|
|
1258 |
20 10009796 . C <*> 0 . END=10009796 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
1259 |
20 10009797 . A <*> 0 . END=10009797 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 |
|
|
1260 |
20 10009798 . G <*> 0 . END=10009800 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1261 |
20 10009801 . A <*> 0 . END=10009801 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1262 |
20 10009802 . G <*> 0 . END=10009803 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 |
|
|
1263 |
20 10009804 . T <*> 0 . END=10009804 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 |
|
|
1264 |
20 10009805 . A <*> 0 . END=10009812 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 |
|
|
1265 |
20 10009813 . G <*> 0 . END=10009813 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1266 |
20 10009814 . C <*> 0 . END=10009815 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
1267 |
20 10009816 . A <*> 0 . END=10009816 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1268 |
20 10009817 . G <*> 0 . END=10009817 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1269 |
20 10009818 . T <*> 0 . END=10009818 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 |
|
|
1270 |
20 10009819 . G <*> 0 . END=10009821 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
1271 |
20 10009822 . C <*> 0 . END=10009822 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1272 |
20 10009823 . T <*> 0 . END=10009823 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 |
|
|
1273 |
20 10009824 . C <*> 0 . END=10009824 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 |
|
|
1274 |
20 10009825 . C <*> 0 . END=10009825 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1275 |
20 10009826 . A <*> 0 . END=10009830 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
1276 |
20 10009831 . A <*> 0 . END=10009831 GT:GQ:MIN_DP:PL 0/0:3:20:0,0,479 |
|
|
1277 |
20 10009832 . G <*> 0 . END=10009833 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 |
|
|
1278 |
20 10009834 . G <*> 0 . END=10009834 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 |
|
|
1279 |
20 10009835 . A <*> 0 . END=10009836 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
1280 |
20 10009837 . A <*> 0 . END=10009837 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1281 |
20 10009838 . G <*> 0 . END=10009838 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
1282 |
20 10009839 . A <*> 0 . END=10009840 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1283 |
20 10009841 . A <*> 0 . END=10009841 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1284 |
20 10009842 . G <*> 0 . END=10009843 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1285 |
20 10009844 . G A,<*> 21.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:21:1,20,0:0.952381,0:21,0,16,990,990,990 |
|
|
1286 |
20 10009845 . A <*> 0 . END=10009845 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 |
|
|
1287 |
20 10009846 . G <*> 0 . END=10009848 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 |
|
|
1288 |
20 10009849 . A <*> 0 . END=10009849 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 |
|
|
1289 |
20 10009850 . G <*> 0 . END=10009855 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1290 |
20 10009856 . G <*> 0 . END=10009856 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1291 |
20 10009857 . A <*> 0 . END=10009857 GT:GQ:MIN_DP:PL 0/0:7:22:0,6,539 |
|
|
1292 |
20 10009858 . G <*> 0 . END=10009860 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1293 |
20 10009861 . A <*> 0 . END=10009861 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 |
|
|
1294 |
20 10009862 . G <*> 0 . END=10009864 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 |
|
|
1295 |
20 10009865 . A <*> 0 . END=10009865 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 |
|
|
1296 |
20 10009866 . G <*> 0 . END=10009870 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1297 |
20 10009871 . A G,<*> 16 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:22:5,17,0:0.772727,0:15,0,18,990,990,990 |
|
|
1298 |
20 10009872 . G <*> 0 . END=10009874 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 |
|
|
1299 |
20 10009875 . A G,<*> 8.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:19:3,16,0:0.842105,0:8,0,16,990,990,990 |
|
|
1300 |
20 10009876 . G <*> 0 . END=10009878 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 |
|
|
1301 |
20 10009879 . A G,<*> 8.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:20:0,20,0:1,0:7,0,5,990,990,990 |
|
|
1302 |
20 10009880 . G <*> 0 . END=10009880 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 |
|
|
1303 |
20 10009881 . A <*> 0 . END=10009881 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1304 |
20 10009882 . G <*> 0 . END=10009882 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1305 |
20 10009883 . A G,<*> 8.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:19:0,19,0:1,0:5,0,0,990,990,990 |
|
|
1306 |
20 10009884 . G <*> 0 . END=10009884 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1307 |
20 10009885 . A <*> 0 . END=10009885 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1308 |
20 10009886 . A <*> 0 . END=10009886 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1309 |
20 10009887 . G <*> 0 . END=10009887 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1310 |
20 10009888 . A <*> 0 . END=10009888 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1311 |
20 10009889 . A <*> 0 . END=10009889 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 |
|
|
1312 |
20 10009890 . G <*> 0 . END=10009890 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1313 |
20 10009891 . G <*> 0 . END=10009891 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1314 |
20 10009892 . A <*> 0 . END=10009892 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1315 |
20 10009893 . A <*> 0 . END=10009893 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1316 |
20 10009894 . G <*> 0 . END=10009894 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 |
|
|
1317 |
20 10009895 . G <*> 0 . END=10009895 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 |
|
|
1318 |
20 10009896 . A <*> 0 . END=10009896 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1319 |
20 10009897 . A <*> 0 . END=10009897 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 |
|
|
1320 |
20 10009898 . G <*> 0 . END=10009898 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1321 |
20 10009899 . G <*> 0 . END=10009927 GT:GQ:MIN_DP:PL 0/0:50:20:0,69,689 |
|
|
1322 |
20 10009928 . G <*> 0 . END=10009928 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1323 |
20 10009929 . A <*> 0 . END=10009933 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 |
|
|
1324 |
20 10009934 . A <*> 0 . END=10009934 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1325 |
20 10009935 . T <*> 0 . END=10009952 GT:GQ:MIN_DP:PL 0/0:50:19:0,69,689 |
|
|
1326 |
20 10009953 . C <*> 0 . END=10009953 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 |
|
|
1327 |
20 10009954 . C <*> 0 . END=10009959 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 |
|
|
1328 |
20 10009960 . G <*> 0 . END=10009960 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 |
|
|
1329 |
20 10009961 . A <*> 0 . END=10009969 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 |
|
|
1330 |
20 10009970 . T <*> 0 . END=10009970 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 |
|
|
1331 |
20 10009971 . T <*> 0 . END=10009988 GT:GQ:MIN_DP:PL 0/0:48:23:0,48,719 |
|
|
1332 |
20 10009989 . A <*> 0 . END=10009989 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 |
|
|
1333 |
20 10009990 . T <*> 0 . END=10009999 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |
|
|
1334 |
20 10010000 . C <*> 0 . END=10010000 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 |